10 20 30 40 50 60 70 80 1DKC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIFUNGAL PROTEIN 07-DEC-99 1DKC
TITLE SOLUTION STRUCTURE OF PAFP-S, AN ANTIFUNGAL PEPTIDE FROM TITLE 2 THE SEEDS OF PHYTOLACCA AMERICANA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFUNGAL PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAFP-S
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYTOLACCA AMERICANA; SOURCE 3 ORGANISM_COMMON: AMERICAN POKEWEED; SOURCE 4 ORGANISM_TAXID: 3527; SOURCE 5 OTHER_DETAILS: SEED
KEYWDS THREE-STRANDS BETA SHEET, ANTIFUNGAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR D.C.WANG,G.H.GAO,F.SHAO,J.X.DAI,J.F.WANG
REVDAT 3 24-FEB-09 1DKC 1 VERSN REVDAT 2 15-MAR-05 1DKC 1 JRNL REVDAT 1 13-DEC-00 1DKC 0
JRNL AUTH G.H.GAO,W.LIU,J.X.DAI,J.F.WANG,Z.HU,Y.ZHANG, JRNL AUTH 2 D.C.WANG JRNL TITL SOLUTION STRUCTURE OF PAFP-S: A NEW KNOTTIN-TYPE JRNL TITL 2 ANTIFUNGAL PEPTIDE FROM THE SEEDS OF PHYTOLACCA JRNL TITL 3 AMERICANA JRNL REF BIOCHEMISTRY V. 40 10973 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11551192 JRNL DOI 10.1021/BI010167K
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DKC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-99. REMARK 100 THE RCSB ID CODE IS RCSB010155.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4MM PROTEIN, 0.2 MM DSS; 4MM REMARK 210 PROTEIN, 0.2 MM DSS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D COSY, REMARK 210 2D TOCSY, E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 1.0, FELIX 97 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 ARG A 38 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 17 -78.51 -75.91 REMARK 500 1 SER A 22 -4.14 71.13 REMARK 500 1 ASN A 37 -167.30 -76.66 REMARK 500 2 LYS A 5 -72.94 -76.71 REMARK 500 2 SER A 21 -73.49 -98.93 REMARK 500 2 SER A 22 23.74 -174.33 REMARK 500 3 SER A 21 -75.46 -112.90 REMARK 500 3 SER A 22 14.12 -172.38 REMARK 500 3 GLN A 30 -80.26 -151.79 REMARK 500 3 SER A 31 71.66 174.33 REMARK 500 3 ASN A 37 -76.81 -60.60 REMARK 500 4 ASN A 6 51.37 -97.42 REMARK 500 4 ALA A 14 -71.38 -121.16 REMARK 500 4 SER A 21 -73.36 -101.10 REMARK 500 4 SER A 22 18.65 -168.90 REMARK 500 4 ASN A 37 -83.57 -69.34 REMARK 500 5 PRO A 17 -164.52 -74.16 REMARK 500 5 SER A 21 -75.00 -101.11 REMARK 500 5 SER A 22 18.48 -175.64 REMARK 500 6 SER A 13 44.57 -101.78 REMARK 500 6 SER A 22 -3.17 83.68 REMARK 500 6 ASN A 37 -80.79 -55.23 REMARK 500 7 ASN A 11 -169.91 -166.41 REMARK 500 7 SER A 22 -5.04 84.27 REMARK 500 7 ASN A 37 -89.57 -68.40 REMARK 500 8 ALA A 14 -70.92 -129.79 REMARK 500 8 SER A 21 -75.39 -109.90 REMARK 500 8 SER A 22 25.34 -170.46 REMARK 500 8 SER A 31 60.46 70.61 REMARK 500 9 ASN A 11 -169.91 -160.21 REMARK 500 9 SER A 21 -73.23 -107.46 REMARK 500 9 SER A 22 15.84 -171.17 REMARK 500 9 ASN A 37 -76.01 -75.51 REMARK 500 10 ASN A 11 -141.88 -161.19 REMARK 500 10 SER A 13 -166.52 -126.83 REMARK 500 10 PRO A 17 40.62 -96.49 REMARK 500 10 SER A 21 -72.27 -99.28 REMARK 500 10 SER A 22 13.17 -173.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 9 0.31 SIDE_CHAIN REMARK 500 1 ARG A 38 0.31 SIDE_CHAIN REMARK 500 2 ARG A 9 0.32 SIDE_CHAIN REMARK 500 2 ARG A 38 0.29 SIDE_CHAIN REMARK 500 3 ARG A 9 0.32 SIDE_CHAIN REMARK 500 3 ARG A 38 0.28 SIDE_CHAIN REMARK 500 4 ARG A 9 0.31 SIDE_CHAIN REMARK 500 4 ARG A 38 0.29 SIDE_CHAIN REMARK 500 5 ARG A 9 0.31 SIDE_CHAIN REMARK 500 5 ARG A 38 0.29 SIDE_CHAIN REMARK 500 6 ARG A 9 0.29 SIDE_CHAIN REMARK 500 6 ARG A 38 0.29 SIDE_CHAIN REMARK 500 7 ARG A 9 0.31 SIDE_CHAIN REMARK 500 7 ARG A 38 0.31 SIDE_CHAIN REMARK 500 8 ARG A 9 0.29 SIDE_CHAIN REMARK 500 8 ARG A 38 0.26 SIDE_CHAIN REMARK 500 9 ARG A 9 0.30 SIDE_CHAIN REMARK 500 9 ARG A 38 0.27 SIDE_CHAIN REMARK 500 10 ARG A 9 0.26 SIDE_CHAIN REMARK 500 10 ARG A 38 0.26 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1DKC A 1 38 UNP P81418 PAFP_PHYAM 28 65
SEQRES 1 A 38 ALA GLY CYS ILE LYS ASN GLY GLY ARG CYS ASN ALA SER SEQRES 2 A 38 ALA GLY PRO PRO TYR CYS CYS SER SER TYR CYS PHE GLN SEQRES 3 A 38 ILE ALA GLY GLN SER TYR GLY VAL CYS LYS ASN ARG
SHEET 1 A 3 GLY A 8 CYS A 10 0 SHEET 2 A 3 TYR A 32 LYS A 36 -1 O GLY A 33 N CYS A 10 SHEET 3 A 3 TYR A 23 ILE A 27 -1 N TYR A 23 O LYS A 36
SSBOND 1 CYS A 3 CYS A 20 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 24 1555 1555 2.02 SSBOND 3 CYS A 19 CYS A 35 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000