10 20 30 40 50 60 70 80 1DEC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER BLOOD COAGULATION 17-MAY-94 1DEC
TITLE STRUCTURE OF THE RGD PROTEIN DECORSIN: CONSERVED MOTIF AND TITLE 2 DISTINCT FUNCTION IN LEECH PROTEINS THAT AFFECT BLOOD TITLE 3 CLOTTING
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECORSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACROBDELLA DECORA; SOURCE 3 ORGANISM_COMMON: NORTH AMERICAN LEECH; SOURCE 4 ORGANISM_TAXID: 6405; SOURCE 5 ORGAN: BLOOD
KEYWDS BLOOD COAGULATION
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR A.M.KREZEL,G.WAGNER,J.SEYMOUR-ULMER,R.A.LAZARUS
REVDAT 2 24-FEB-09 1DEC 1 VERSN REVDAT 1 31-AUG-94 1DEC 0
JRNL AUTH A.M.KREZEL,G.WAGNER,J.SEYMOUR-ULMER,R.A.LAZARUS JRNL TITL STRUCTURE OF THE RGD PROTEIN DECORSIN: CONSERVED JRNL TITL 2 MOTIF AND DISTINCT FUNCTION IN LEECH PROTEINS THAT JRNL TITL 3 AFFECT BLOOD CLOTTING. JRNL REF SCIENCE V. 264 1944 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8009227
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DEC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 7 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 8 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 9 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 10 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 11 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 12 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 12 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 12 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 13 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 13 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 13 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 15 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 15 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 15 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 16 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 16 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 16 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 17 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 17 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 75 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 171.32 -53.81 REMARK 500 1 ASP A 10 83.17 63.50 REMARK 500 1 ASN A 18 -84.55 69.80 REMARK 500 1 LYS A 19 59.20 -146.79 REMARK 500 1 ASP A 33 65.29 -113.25 REMARK 500 2 PRO A 5 176.20 -56.12 REMARK 500 2 ASP A 10 83.56 53.15 REMARK 500 2 ASN A 18 -88.33 74.36 REMARK 500 2 LYS A 19 43.26 -145.15 REMARK 500 2 ASP A 33 66.02 -106.92 REMARK 500 3 PRO A 5 176.90 -55.55 REMARK 500 3 ASP A 10 82.05 59.92 REMARK 500 3 ASN A 18 -83.74 72.23 REMARK 500 3 LYS A 19 50.86 -143.88 REMARK 500 4 PRO A 5 173.15 -55.84 REMARK 500 4 ASP A 10 89.76 65.43 REMARK 500 4 ASN A 18 -89.07 70.27 REMARK 500 4 LYS A 19 57.51 -153.71 REMARK 500 4 ASP A 33 64.06 -110.56 REMARK 500 5 ASP A 10 84.31 62.29 REMARK 500 5 ASN A 18 -89.07 74.58 REMARK 500 5 LYS A 19 43.60 -144.35 REMARK 500 6 PRO A 5 173.25 -54.62 REMARK 500 6 ASP A 10 86.93 59.63 REMARK 500 6 ASN A 18 -91.69 71.76 REMARK 500 6 LYS A 19 51.07 -144.29 REMARK 500 7 ASP A 10 89.32 67.08 REMARK 500 7 ASN A 18 -84.59 70.89 REMARK 500 7 LYS A 19 56.60 -148.00 REMARK 500 7 ASP A 33 64.48 -106.56 REMARK 500 8 ASP A 10 84.88 62.94 REMARK 500 8 ASN A 18 -86.19 72.33 REMARK 500 8 LYS A 19 51.62 -144.95 REMARK 500 9 PRO A 5 175.22 -56.01 REMARK 500 9 ASP A 10 87.65 65.24 REMARK 500 9 ASN A 18 -89.64 74.08 REMARK 500 9 LYS A 19 45.45 -142.98 REMARK 500 9 ASP A 33 64.67 -107.84 REMARK 500 10 PRO A 5 175.36 -55.52 REMARK 500 10 ASP A 10 83.43 58.24 REMARK 500 10 ASN A 18 -81.16 74.03 REMARK 500 11 PRO A 5 174.13 -56.80 REMARK 500 11 ASP A 10 83.34 61.47 REMARK 500 11 ASN A 18 -84.77 71.44 REMARK 500 12 ASP A 10 84.45 62.72 REMARK 500 12 ASN A 18 -83.42 72.25 REMARK 500 12 LYS A 19 49.80 -143.17 REMARK 500 13 PRO A 5 176.75 -55.17 REMARK 500 13 ASP A 10 84.60 58.97 REMARK 500 13 ASN A 18 -84.19 71.53 REMARK 500 13 ASP A 33 66.33 -108.98 REMARK 500 14 PRO A 5 174.38 -56.09 REMARK 500 14 ASP A 10 84.04 61.88 REMARK 500 14 ASN A 18 -83.55 72.56 REMARK 500 15 PRO A 5 178.62 -57.48 REMARK 500 15 ASP A 10 82.42 51.76 REMARK 500 15 ASN A 18 -87.85 74.72 REMARK 500 15 LYS A 19 44.14 -146.20 REMARK 500 16 PRO A 5 173.87 -55.63 REMARK 500 16 ASP A 10 84.52 59.66 REMARK 500 16 ASN A 18 -85.76 69.91 REMARK 500 16 LYS A 19 56.06 -146.64 REMARK 500 16 ASP A 33 65.35 -108.02 REMARK 500 17 PRO A 5 172.85 -56.21 REMARK 500 17 ASP A 10 84.56 63.11 REMARK 500 17 ASN A 18 -90.84 73.64 REMARK 500 17 LYS A 19 45.79 -146.35 REMARK 500 18 PRO A 5 171.99 -54.47 REMARK 500 18 ASP A 10 82.78 60.33 REMARK 500 18 ASN A 18 -84.85 73.04 REMARK 500 18 LYS A 19 50.45 -143.64 REMARK 500 19 ASP A 10 84.93 61.54 REMARK 500 19 ASN A 18 -88.54 73.76 REMARK 500 19 LYS A 19 47.64 -144.71 REMARK 500 19 ASP A 33 66.10 -108.80 REMARK 500 20 ASP A 10 88.57 66.52 REMARK 500 20 ASN A 18 -82.95 70.82 REMARK 500 20 LYS A 19 57.20 -150.33 REMARK 500 20 ASP A 33 64.64 -107.59 REMARK 500 21 PRO A 5 174.38 -55.74 REMARK 500 21 ASP A 10 86.74 62.67 REMARK 500 21 ASN A 18 -85.93 72.75 REMARK 500 21 ASP A 33 65.92 -109.41 REMARK 500 22 PRO A 5 172.80 -55.75 REMARK 500 22 ASP A 10 83.55 62.42 REMARK 500 22 ASN A 18 -82.59 73.45 REMARK 500 23 ASP A 10 88.97 62.35 REMARK 500 23 ASN A 18 -92.22 73.54 REMARK 500 23 LYS A 19 50.67 -144.48 REMARK 500 24 PRO A 5 171.85 -54.57 REMARK 500 24 ASP A 10 90.14 65.37 REMARK 500 24 ASN A 18 -89.76 74.17 REMARK 500 24 LYS A 19 46.59 -143.57 REMARK 500 25 PRO A 5 172.18 -54.69 REMARK 500 25 ASP A 10 87.33 62.32 REMARK 500 25 ASN A 18 -85.38 69.90 REMARK 500 25 LYS A 19 57.67 -145.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: RGD REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ARG-GLY-ASP RECOGNITION SITE COMPRISES REMARK 800 RESIDUES 31 - 33
DBREF 1DEC A 1 39 UNP P17350 DECO_MACDE 1 39
SEQRES 1 A 39 ALA PRO ARG LEU PRO GLN CYS GLN GLY ASP ASP GLN GLU SEQRES 2 A 39 LYS CYS LEU CYS ASN LYS ASP GLU CYS PRO PRO GLY GLN SEQRES 3 A 39 CYS ARG PHE PRO ARG GLY ASP ALA ASP PRO TYR CYS GLU
SHEET 1 MIX 3 PRO A 5 CYS A 7 0 SHEET 2 MIX 3 CYS A 15 CYS A 17 1 O LEU A 16 N CYS A 7 SHEET 3 MIX 3 ASP A 20 CYS A 22 -1 N CYS A 22 O CYS A 15 SHEET 1 HRP 2 GLN A 26 PHE A 29 0 SHEET 2 HRP 2 PRO A 36 GLU A 39 -1 O TYR A 37 N ARG A 28
SSBOND 1 CYS A 7 CYS A 15 1555 1555 2.00 SSBOND 2 CYS A 17 CYS A 27 1555 1555 2.00 SSBOND 3 CYS A 22 CYS A 38 1555 1555 1.99
SITE 1 RGD 3 ARG A 31 GLY A 32 ASP A 33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000