1DE1 - Header Asymmetric Unit

HEADER ELECTRON TRANSPORT 12-NOV-99 1DE1

TITLE NMR STRUCTURES OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: OXIDIZED

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN SOURCE 5 BACTERIOPHAGE T4

KEYWDS GLUTAREDOXIN, ELECTRON TRANSPORT

EXPDTA SOLUTION NMR

NUMMDL 30

AUTHOR Y.WANG,G.AMEGBEY,D.S.WISHART

REVDAT 4 24-FEB-09 1DE1 1 VERSN REVDAT 3 30-MAR-04 1DE1 1 JRNL REVDAT 2 30-JUN-00 1DE1 1 SOURCE EXPDTA REVDAT 1 24-NOV-99 1DE1 0

JRNL AUTH Y.WANG,G.AMEGBEY,D.S.WISHART JRNL TITL SOLUTION STRUCTURES OF REDUCED AND OXIDIZED JRNL TITL 2 BACTERIOPHAGE T4 GLUTAREDOXIN. JRNL REF J.BIOMOL.NMR V. 29 85 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 15017142 JRNL DOI 10.1023/B:JNMR.0000019506.30351.CA

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER, A. T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1050 REMARK 3 DISTANCE, 188 DIHEDRAL ANGLE AND 201 H CHEMICAL SHIFT REMARK 3 CONSTRAINTS.

REMARK 4 REMARK 4 1DE1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-99. REMARK 100 THE RCSB ID CODE IS RCSB010006.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM T4 GLUTAREDOXIN; 50MM REMARK 210 PH7.0 PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, TOCSY, DQF_COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, X-PLOR 3.85 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 24 REMARK 210 REMARK 210 REMARK: THE STRUCTURES WERE DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 8 -65.76 -107.80 REMARK 500 1 SER A 9 -32.53 168.79 REMARK 500 1 CYS A 14 115.36 -179.37 REMARK 500 1 LYS A 28 65.05 71.67 REMARK 500 1 ARG A 57 28.07 -150.64 REMARK 500 1 ASP A 58 -156.63 -121.70 REMARK 500 1 PHE A 79 -70.08 -79.66 REMARK 500 2 SER A 9 -13.76 83.81 REMARK 500 2 CYS A 14 88.93 -179.26 REMARK 500 2 LYS A 28 54.07 70.34 REMARK 500 2 PRO A 71 58.85 -63.74 REMARK 500 2 ASP A 72 29.74 90.49 REMARK 500 2 PHE A 79 -70.55 -70.79 REMARK 500 2 PHE A 86 -70.18 -87.87 REMARK 500 3 CYS A 14 108.09 -178.68 REMARK 500 3 PHE A 86 -70.74 -96.17 REMARK 500 4 ASP A 8 -76.21 -94.41 REMARK 500 4 SER A 9 -34.50 174.53 REMARK 500 4 LYS A 28 42.48 74.16 REMARK 500 4 ARG A 57 35.33 -95.51 REMARK 500 4 ASP A 58 -147.21 -120.88 REMARK 500 4 GLN A 60 98.21 -69.19 REMARK 500 4 SER A 74 152.76 179.92 REMARK 500 4 PHE A 79 -70.66 -71.56 REMARK 500 5 ASP A 8 -81.08 -72.15 REMARK 500 5 SER A 9 -41.91 174.12 REMARK 500 5 CYS A 14 73.82 -174.66 REMARK 500 5 LYS A 28 62.28 69.40 REMARK 500 5 ARG A 57 30.87 -150.53 REMARK 500 5 ASP A 58 -151.34 -121.00 REMARK 500 5 PHE A 86 -69.80 -90.65 REMARK 500 6 SER A 9 -33.15 166.73 REMARK 500 6 CYS A 14 108.32 -172.14 REMARK 500 6 PHE A 43 170.29 -59.40 REMARK 500 6 SER A 74 113.08 -167.64 REMARK 500 6 PHE A 86 -70.38 -87.64 REMARK 500 7 CYS A 14 123.78 -175.61 REMARK 500 7 LYS A 28 61.14 67.08 REMARK 500 7 ARG A 57 31.35 -93.90 REMARK 500 7 ASP A 58 -153.46 -121.15 REMARK 500 7 PHE A 86 -70.34 -87.97 REMARK 500 8 CYS A 14 113.70 -167.92 REMARK 500 8 LYS A 28 60.99 68.39 REMARK 500 8 PHE A 79 -70.03 -71.28 REMARK 500 8 PHE A 86 -70.37 -95.62 REMARK 500 9 CYS A 14 119.00 -175.04 REMARK 500 9 LYS A 40 -8.00 -58.79 REMARK 500 9 ARG A 57 -167.60 -125.25 REMARK 500 9 PHE A 79 -70.20 -74.36 REMARK 500 10 CYS A 14 111.65 -175.95 REMARK 500 10 MET A 37 73.40 -160.73 REMARK 500 10 PHE A 43 170.45 -59.74 REMARK 500 10 ARG A 57 31.03 -150.33 REMARK 500 10 ASP A 58 -143.72 -121.07 REMARK 500 10 ASP A 72 39.79 -163.23 REMARK 500 11 ASP A 8 -74.38 -70.58 REMARK 500 11 SER A 9 -36.69 173.62 REMARK 500 11 CYS A 14 113.15 177.43 REMARK 500 11 LYS A 28 63.52 71.65 REMARK 500 11 ARG A 57 33.64 -150.34 REMARK 500 11 ASP A 58 -146.88 -120.92 REMARK 500 11 GLN A 60 98.61 -67.28 REMARK 500 11 PHE A 79 -70.76 -72.05 REMARK 500 12 ASP A 8 -73.00 -83.47 REMARK 500 12 SER A 9 -38.75 171.79 REMARK 500 12 CYS A 14 87.35 -165.97 REMARK 500 12 LYS A 28 63.75 73.81 REMARK 500 12 ASP A 72 29.35 -140.38 REMARK 500 12 HIS A 75 109.18 -49.95 REMARK 500 13 SER A 9 -39.35 166.36 REMARK 500 13 CYS A 14 65.59 -175.15 REMARK 500 13 LYS A 28 45.52 76.37 REMARK 500 13 ARG A 57 28.65 -149.68 REMARK 500 13 ASP A 58 -147.14 -121.30 REMARK 500 13 SER A 74 155.67 176.67 REMARK 500 13 PHE A 79 -70.87 -67.71 REMARK 500 13 PHE A 86 -70.46 -87.98 REMARK 500 14 ASP A 8 -79.56 -84.07 REMARK 500 14 SER A 9 -34.55 175.42 REMARK 500 14 CYS A 14 113.60 175.11 REMARK 500 14 LYS A 28 38.43 72.59 REMARK 500 14 MET A 37 89.49 -173.21 REMARK 500 14 LYS A 40 -9.07 -57.08 REMARK 500 14 PHE A 43 170.97 -58.77 REMARK 500 14 ASP A 72 38.97 -161.30 REMARK 500 14 PHE A 79 -70.11 -75.49 REMARK 500 14 PHE A 86 -70.32 -87.32 REMARK 500 15 ASP A 8 -71.74 -98.94 REMARK 500 15 SER A 9 -32.14 169.59 REMARK 500 15 CYS A 14 93.53 -172.32 REMARK 500 15 ARG A 57 33.10 -150.48 REMARK 500 15 ASP A 58 -148.05 -120.85 REMARK 500 15 PHE A 79 -70.19 -76.29 REMARK 500 16 PHE A 2 120.90 -39.71 REMARK 500 16 ASP A 8 -77.24 -74.88 REMARK 500 16 SER A 9 -32.63 170.07 REMARK 500 16 CYS A 14 87.56 -164.99 REMARK 500 16 LYS A 28 52.65 72.31 REMARK 500 16 PRO A 30 178.27 -49.53 REMARK 500 16 PRO A 71 -37.78 -31.90 REMARK 500 16 ASP A 72 34.03 -170.29 REMARK 500 17 SER A 9 -10.94 81.09 REMARK 500 17 CYS A 14 122.12 -174.29 REMARK 500 17 LYS A 28 57.91 71.24 REMARK 500 17 LEU A 55 -70.05 -67.66 REMARK 500 17 ILE A 61 81.45 -62.88 REMARK 500 17 ASP A 72 37.05 -164.79 REMARK 500 17 PHE A 79 -70.67 -71.80 REMARK 500 18 SER A 9 -179.01 177.88 REMARK 500 18 CYS A 14 73.03 176.67 REMARK 500 18 LYS A 28 43.93 72.86 REMARK 500 18 PHE A 43 170.32 -59.85 REMARK 500 18 ARG A 57 27.11 -150.38 REMARK 500 18 ASP A 58 -144.85 -121.77 REMARK 500 18 LEU A 63 166.79 -48.27 REMARK 500 18 PRO A 71 59.44 -68.09 REMARK 500 18 ASP A 72 25.06 100.37 REMARK 500 18 PHE A 79 -70.57 -72.33 REMARK 500 19 ASP A 8 -75.27 -64.55 REMARK 500 19 SER A 9 -32.87 167.07 REMARK 500 19 CYS A 14 82.23 -176.60 REMARK 500 19 LYS A 28 50.80 72.65 REMARK 500 19 PRO A 38 31.08 -88.44 REMARK 500 19 LYS A 40 -8.57 -53.65 REMARK 500 19 ARG A 57 27.60 -150.62 REMARK 500 19 ASP A 58 -156.71 -121.59 REMARK 500 19 PHE A 79 -70.66 -70.89 REMARK 500 19 PHE A 86 -70.24 -88.96 REMARK 500 20 ASP A 8 55.95 -108.87 REMARK 500 20 HIS A 12 118.09 -175.72 REMARK 500 20 CYS A 14 107.79 -176.58 REMARK 500 20 LYS A 28 49.85 76.11 REMARK 500 20 LYS A 40 -9.06 -59.33 REMARK 500 20 ARG A 57 31.24 -150.23 REMARK 500 20 ASP A 58 -142.27 -121.00 REMARK 500 20 GLN A 60 98.35 -69.57 REMARK 500 20 SER A 74 117.71 -179.75 REMARK 500 21 SER A 9 -14.11 84.80 REMARK 500 21 CYS A 14 71.36 -176.91 REMARK 500 21 LYS A 28 52.33 70.59 REMARK 500 21 PRO A 38 34.20 -87.82 REMARK 500 21 ARG A 57 26.56 -150.45 REMARK 500 21 ASP A 58 -150.78 -121.62 REMARK 500 21 ASP A 72 39.77 -160.95 REMARK 500 22 ASP A 8 69.32 -117.52 REMARK 500 22 SER A 9 -172.00 177.87 REMARK 500 22 PHE A 43 170.09 -57.94 REMARK 500 22 ARG A 57 30.92 -150.64 REMARK 500 22 ASP A 58 -145.75 -121.04 REMARK 500 22 ALA A 70 150.15 -49.67 REMARK 500 22 PHE A 86 -70.48 -89.91 REMARK 500 23 PHE A 2 116.99 -39.56 REMARK 500 23 SER A 9 -31.41 164.09 REMARK 500 23 LYS A 13 156.58 -48.55 REMARK 500 23 CYS A 14 62.66 -174.27 REMARK 500 23 PRO A 30 171.42 -44.91 REMARK 500 23 ARG A 57 27.90 -141.35 REMARK 500 23 ASP A 58 -147.23 -121.50 REMARK 500 23 GLN A 60 98.01 -69.95 REMARK 500 23 ALA A 70 164.04 -48.16 REMARK 500 23 PRO A 71 58.93 -62.88 REMARK 500 23 ASP A 72 29.96 86.61 REMARK 500 23 PHE A 79 -70.57 -72.53 REMARK 500 23 PHE A 86 -66.89 -90.52 REMARK 500 24 CYS A 14 96.11 -175.78 REMARK 500 24 LYS A 28 56.36 73.54 REMARK 500 24 ARG A 57 31.54 -150.72 REMARK 500 24 ASP A 58 -149.96 -120.98 REMARK 500 24 ALA A 70 152.28 -48.38 REMARK 500 24 SER A 74 143.50 -179.61 REMARK 500 24 PHE A 86 -70.15 -90.02 REMARK 500 25 SER A 9 -1.81 73.18 REMARK 500 25 CYS A 14 125.65 177.73 REMARK 500 25 LYS A 28 36.99 70.87 REMARK 500 25 ASP A 72 40.08 -160.24 REMARK 500 25 PHE A 79 -70.76 -70.39 REMARK 500 25 PHE A 86 -70.34 -86.11 REMARK 500 26 ASP A 8 -65.47 -93.66 REMARK 500 26 SER A 9 -37.71 162.28 REMARK 500 26 CYS A 14 119.11 -162.50 REMARK 500 26 PHE A 86 -70.85 -99.66 REMARK 500 27 ASP A 8 -74.74 -66.95 REMARK 500 27 SER A 9 -34.34 175.29 REMARK 500 27 CYS A 14 75.67 -167.49 REMARK 500 27 ARG A 57 30.56 -150.53 REMARK 500 27 ASP A 58 -148.33 -121.04 REMARK 500 27 GLN A 60 98.82 -69.69 REMARK 500 27 ASP A 72 35.16 -164.26 REMARK 500 27 HIS A 75 101.78 -50.04 REMARK 500 27 PHE A 79 -70.81 -70.12 REMARK 500 27 PHE A 86 -70.16 -88.00 REMARK 500 28 ASP A 8 -77.90 -78.49 REMARK 500 28 SER A 9 -37.88 170.78 REMARK 500 28 CYS A 14 103.85 -174.63 REMARK 500 28 ILE A 61 80.05 -68.17 REMARK 500 28 PRO A 71 -36.88 -34.94 REMARK 500 28 ASP A 72 31.02 -166.60 REMARK 500 28 SER A 74 179.93 73.36 REMARK 500 28 PHE A 79 -70.60 -70.65 REMARK 500 28 PHE A 86 -70.19 -95.13 REMARK 500 29 CYS A 14 116.90 179.19 REMARK 500 29 LYS A 28 57.71 70.27 REMARK 500 29 ARG A 57 -164.24 -108.58 REMARK 500 29 SER A 74 119.13 -164.50 REMARK 500 29 PHE A 86 -70.36 -86.34 REMARK 500 30 PHE A 2 123.75 -39.53 REMARK 500 30 LYS A 13 156.94 -46.55 REMARK 500 30 CYS A 14 69.28 -153.64 REMARK 500 30 PRO A 30 179.54 -49.96 REMARK 500 30 ARG A 57 30.27 -146.99 REMARK 500 30 ASP A 58 -146.29 -121.18 REMARK 500 30 PHE A 79 -70.67 -70.63 REMARK 500 30 PHE A 86 -70.24 -86.76 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DE2 RELATED DB: PDB REMARK 900 REDUCED BACTERIOPHAGE T4 GLUTAREDOXIN

DBREF 1DE1 A 1 87 UNP P00276 GLRX_BPT4 1 87

SEQRES 1 A 87 MET PHE LYS VAL TYR GLY TYR ASP SER ASN ILE HIS LYS SEQRES 2 A 87 CYS VAL TYR CYS ASP ASN ALA LYS ARG LEU LEU THR VAL SEQRES 3 A 87 LYS LYS GLN PRO PHE GLU PHE ILE ASN ILE MET PRO GLU SEQRES 4 A 87 LYS GLY VAL PHE ASP ASP GLU LYS ILE ALA GLU LEU LEU SEQRES 5 A 87 THR LYS LEU GLY ARG ASP THR GLN ILE GLY LEU THR MET SEQRES 6 A 87 PRO GLN VAL PHE ALA PRO ASP GLY SER HIS ILE GLY GLY SEQRES 7 A 87 PHE ASP GLN LEU ARG GLU TYR PHE LYS

HELIX 1 1 VAL A 15 LYS A 28 1 14 HELIX 2 2 ASP A 44 GLY A 56 1 13 HELIX 3 3 GLY A 78 LYS A 87 1 10

SHEET 1 A 4 PHE A 31 ASN A 35 0 SHEET 2 A 4 PHE A 2 GLY A 6 1 O PHE A 2 N GLU A 32 SHEET 3 A 4 GLN A 67 ALA A 70 -1 N GLN A 67 O TYR A 5 SHEET 4 A 4 SER A 74 GLY A 77 -1 O SER A 74 N ALA A 70

SSBOND 1 CYS A 14 CYS A 17 1555 1555 2.03

CISPEP 1 MET A 65 PRO A 66 1 0.53 CISPEP 2 MET A 65 PRO A 66 2 0.39 CISPEP 3 MET A 65 PRO A 66 3 0.60 CISPEP 4 MET A 65 PRO A 66 4 0.31 CISPEP 5 MET A 65 PRO A 66 5 0.25 CISPEP 6 MET A 65 PRO A 66 6 0.31 CISPEP 7 MET A 65 PRO A 66 7 0.39 CISPEP 8 MET A 65 PRO A 66 8 0.37 CISPEP 9 MET A 65 PRO A 66 9 0.26 CISPEP 10 MET A 65 PRO A 66 10 0.51 CISPEP 11 MET A 65 PRO A 66 11 0.56 CISPEP 12 MET A 65 PRO A 66 12 0.31 CISPEP 13 MET A 65 PRO A 66 13 0.56 CISPEP 14 MET A 65 PRO A 66 14 0.41 CISPEP 15 MET A 65 PRO A 66 15 0.67 CISPEP 16 MET A 65 PRO A 66 16 0.42 CISPEP 17 MET A 65 PRO A 66 17 0.46 CISPEP 18 MET A 65 PRO A 66 18 0.29 CISPEP 19 MET A 65 PRO A 66 19 0.50 CISPEP 20 MET A 65 PRO A 66 20 0.34 CISPEP 21 MET A 65 PRO A 66 21 0.29 CISPEP 22 MET A 65 PRO A 66 22 0.18 CISPEP 23 MET A 65 PRO A 66 23 0.20 CISPEP 24 MET A 65 PRO A 66 24 0.56 CISPEP 25 MET A 65 PRO A 66 25 0.32 CISPEP 26 MET A 65 PRO A 66 26 0.51 CISPEP 27 MET A 65 PRO A 66 27 0.61 CISPEP 28 MET A 65 PRO A 66 28 0.40 CISPEP 29 MET A 65 PRO A 66 29 0.26 CISPEP 30 MET A 65 PRO A 66 30 0.52

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000