10 20 30 40 50 60 70 80 1DDI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 10-NOV-99 1DDI
TITLE CRYSTAL STRUCTURE OF SIR-FP60
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFITE REDUCTASE [NADPH] FLAVOPROTEIN ALPHA- COMPND 3 COMPONENT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SIR-FP60; COMPND 6 EC: 1.8.1.2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS CYTOCHROME P450 REDUCTASE, FNR, FLAVOPROTEIN, MODULAR KEYWDS 2 PROTEIN, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.GRUEZ,D.PIGNOL,M.ZEGHOUF,J.COVES,M.FONTECAVE,J.L.FERRER, AUTHOR 2 J.C.FONTECILLA-CAMPS
REVDAT 2 24-FEB-09 1DDI 1 VERSN REVDAT 1 13-NOV-00 1DDI 0
JRNL AUTH A.GRUEZ,D.PIGNOL,M.ZEGHOUF,J.COVES,M.FONTECAVE, JRNL AUTH 2 J.L.FERRER,J.C.FONTECILLA-CAMPS JRNL TITL FOUR CRYSTAL STRUCTURES OF THE 60 KDA FLAVOPROTEIN JRNL TITL 2 MONOMER OF THE SULFITE REDUCTASE INDICATE A JRNL TITL 3 DISORDERED FLAVODOXIN-LIKE MODULE. JRNL REF J.MOL.BIOL. V. 299 199 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10860732 JRNL DOI 10.1006/JMBI.2000.3748
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 0.1 REMARK 3 NUMBER OF REFLECTIONS : 23679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DDI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-99. REMARK 100 THE RCSB ID CODE IS RCSB009994.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 4K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.62667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.62667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.31333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ASP A 372 CG OD1 OD2 REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 VAL A 429 CG1 CG2 REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 GLU A 431 CG CD OE1 OE2 REMARK 470 ASN A 450 CG OD1 ND2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 GLU A 538 CG CD OE1 OE2 REMARK 470 ARG A 557 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 560 CG CD CE NZ REMARK 470 GLN A 564 CG CD OE1 NE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 MET A 576 CG SD CE REMARK 470 ASP A 577 CG OD1 OD2 REMARK 470 THR A 578 OG1 CG2 REMARK 470 GLU A 579 CG CD OE1 OE2 REMARK 470 GLU A 591 CG CD OE1 OE2 REMARK 470 ARG A 592 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 297 OE1 GLU A 300 2.07 REMARK 500 O ARG A 428 N GLU A 430 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N SER A 229 O HOH A 974 4565 1.87 REMARK 500 O HOH A 957 O HOH A 973 3564 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 265 CA ASP A 265 CB 0.151 REMARK 500 ARG A 269 CD ARG A 269 NE 0.134 REMARK 500 ARG A 269 CZ ARG A 269 NH1 0.086 REMARK 500 VAL A 397 C VAL A 397 O 0.183 REMARK 500 GLU A 398 N GLU A 398 CA 0.227 REMARK 500 GLY A 433 N GLY A 433 CA 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 231 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 TYR A 231 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 TYR A 231 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 PRO A 230 CA - C - N ANGL. DEV. = 22.9 DEGREES REMARK 500 PRO A 230 O - C - N ANGL. DEV. = -28.9 DEGREES REMARK 500 TYR A 231 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP A 234 CA - C - N ANGL. DEV. = 30.8 DEGREES REMARK 500 ASP A 234 O - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 ILE A 247 CA - CB - CG1 ANGL. DEV. = -14.7 DEGREES REMARK 500 ILE A 247 CA - CB - CG2 ANGL. DEV. = 29.0 DEGREES REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 262 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 265 CB - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 ASP A 265 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP A 265 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 265 CB - CG - OD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 269 NH1 - CZ - NH2 ANGL. DEV. = -23.7 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = -24.4 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = 48.1 DEGREES REMARK 500 TRP A 295 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 LYS A 297 N - CA - CB ANGL. DEV. = 23.9 DEGREES REMARK 500 LEU A 296 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 GLY A 298 CA - C - O ANGL. DEV. = -15.5 DEGREES REMARK 500 LYS A 297 CA - C - N ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 298 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 GLY A 298 CA - C - N ANGL. DEV. = 24.8 DEGREES REMARK 500 GLY A 298 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 VAL A 302 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 TYR A 332 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 332 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 THR A 340 N - CA - CB ANGL. DEV. = -19.5 DEGREES REMARK 500 ASP A 347 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 357 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 VAL A 364 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ILE A 377 CA - CB - CG1 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU A 383 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 LEU A 383 CB - CG - CD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 THR A 384 N - CA - CB ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 386 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 TYR A 388 CB - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 388 CB - CG - CD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 VAL A 397 N - CA - CB ANGL. DEV. = -19.5 DEGREES REMARK 500 VAL A 397 CG1 - CB - CG2 ANGL. DEV. = 13.7 DEGREES REMARK 500 VAL A 397 CA - C - O ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 108 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 229 124.36 69.51 REMARK 500 TYR A 231 112.15 74.48 REMARK 500 LEU A 296 -168.27 -105.12 REMARK 500 LYS A 297 -163.08 -123.29 REMARK 500 ASP A 299 -67.17 57.28 REMARK 500 GLU A 398 -77.14 -118.85 REMARK 500 ASN A 399 54.74 -90.43 REMARK 500 ARG A 428 -154.64 -117.91 REMARK 500 VAL A 429 63.46 -24.33 REMARK 500 GLU A 432 74.37 -42.29 REMARK 500 ASN A 450 88.12 105.18 REMARK 500 ASN A 489 173.47 174.30 REMARK 500 GLN A 522 68.27 -159.04 REMARK 500 LYS A 523 -72.48 72.42 REMARK 500 MET A 576 -37.08 -162.18 REMARK 500 ASP A 577 171.30 53.06 REMARK 500 GLU A 591 -29.40 96.96 REMARK 500 ARG A 592 36.12 72.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 296 LYS A 297 130.25 REMARK 500 VAL A 429 GLU A 430 66.68 REMARK 500 GLU A 430 GLU A 431 144.21 REMARK 500 GLU A 432 GLY A 433 -77.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 226 -11.91 REMARK 500 ASN A 251 16.05 REMARK 500 ILE A 259 -10.76 REMARK 500 ASP A 265 21.05 REMARK 500 GLU A 289 -10.88 REMARK 500 SER A 338 -10.23 REMARK 500 ALA A 356 -18.52 REMARK 500 VAL A 364 -10.36 REMARK 500 ASP A 372 -10.04 REMARK 500 ILE A 377 -10.76 REMARK 500 LEU A 387 12.05 REMARK 500 VAL A 407 12.37 REMARK 500 VAL A 429 18.19 REMARK 500 GLU A 432 42.46 REMARK 500 ALA A 449 12.38 REMARK 500 PRO A 454 10.04 REMARK 500 GLY A 575 20.14 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 601
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DDG RELATED DB: PDB REMARK 900 SECOND CRYSTAL FORM
DBREF 1DDI A 226 599 UNP P38038 CYSJ_ECOLI 226 599
SEQRES 1 A 374 ILE HIS THR SER PRO TYR SER LYS ASP ALA PRO LEU VAL SEQRES 2 A 374 ALA SER LEU SER VAL ASN GLN LYS ILE THR GLY ARG ASN SEQRES 3 A 374 SER GLU LYS ASP VAL ARG HIS ILE GLU ILE ASP LEU GLY SEQRES 4 A 374 ASP SER GLY LEU ARG TYR GLN PRO GLY ASP ALA LEU GLY SEQRES 5 A 374 VAL TRP TYR GLN ASN ASP PRO ALA LEU VAL LYS GLU LEU SEQRES 6 A 374 VAL GLU LEU LEU TRP LEU LYS GLY ASP GLU PRO VAL THR SEQRES 7 A 374 VAL GLU GLY LYS THR LEU PRO LEU ASN GLU ALA LEU GLN SEQRES 8 A 374 TRP HIS PHE GLU LEU THR VAL ASN THR ALA ASN ILE VAL SEQRES 9 A 374 GLU ASN TYR ALA THR LEU THR ARG SER GLU THR LEU LEU SEQRES 10 A 374 PRO LEU VAL GLY ASP LYS ALA LYS LEU GLN HIS TYR ALA SEQRES 11 A 374 ALA THR THR PRO ILE VAL ASP MET VAL ARG PHE SER PRO SEQRES 12 A 374 ALA GLN LEU ASP ALA GLU ALA LEU ILE ASN LEU LEU ARG SEQRES 13 A 374 PRO LEU THR PRO ARG LEU TYR SER ILE ALA SER SER GLN SEQRES 14 A 374 ALA GLU VAL GLU ASN GLU VAL HIS VAL THR VAL GLY VAL SEQRES 15 A 374 VAL ARG TYR ASP VAL GLU GLY ARG ALA ARG ALA GLY GLY SEQRES 16 A 374 ALA SER SER PHE LEU ALA ASP ARG VAL GLU GLU GLU GLY SEQRES 17 A 374 GLU VAL ARG VAL PHE ILE GLU HIS ASN ASP ASN PHE ARG SEQRES 18 A 374 LEU PRO ALA ASN PRO GLU THR PRO VAL ILE MET ILE GLY SEQRES 19 A 374 PRO GLY THR GLY ILE ALA PRO PHE ARG ALA PHE MET GLN SEQRES 20 A 374 GLN ARG ALA ALA ASP GLU ALA PRO GLY LYS ASN TRP LEU SEQRES 21 A 374 PHE PHE GLY ASN PRO HIS PHE THR GLU ASP PHE LEU TYR SEQRES 22 A 374 GLN VAL GLU TRP GLN ARG TYR VAL LYS GLU GLY VAL LEU SEQRES 23 A 374 THR ARG ILE ASP LEU ALA TRP SER ARG ASP GLN LYS GLU SEQRES 24 A 374 LYS VAL TYR VAL GLN ASP LYS LEU ARG GLU GLN GLY ALA SEQRES 25 A 374 GLU LEU TRP ARG TRP ILE ASN ASP GLY ALA HIS ILE TYR SEQRES 26 A 374 VAL CYS GLY ASP ALA ASN ARG MET ALA LYS ASP VAL GLU SEQRES 27 A 374 GLN ALA LEU LEU GLU VAL ILE ALA GLU PHE GLY GLY MET SEQRES 28 A 374 ASP THR GLU ALA ALA ASP GLU PHE LEU SER GLU LEU ARG SEQRES 29 A 374 VAL GLU ARG ARG TYR GLN ARG ASP VAL TYR
HET FAD A 600 53 HET NAP A 601 27
HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *271(H2 O)
HELIX 1 1 ASP A 283 LEU A 294 1 12 HELIX 2 2 LEU A 311 HIS A 318 1 8 HELIX 3 3 THR A 325 ARG A 337 1 13 HELIX 4 4 LEU A 341 VAL A 345 5 5 HELIX 5 5 ASP A 347 THR A 358 1 12 HELIX 6 6 PRO A 359 SER A 367 1 9 HELIX 7 8 GLY A 419 ARG A 428 1 10 HELIX 8 9 PRO A 460 GLY A 463 5 4 HELIX 9 10 ILE A 464 ASP A 477 1 14 HELIX 10 11 HIS A 491 PHE A 496 1 6 HELIX 11 12 TYR A 498 GLU A 508 1 11 HELIX 12 13 TYR A 527 GLN A 535 1 9 HELIX 13 14 GLN A 535 ASP A 545 1 11 HELIX 14 16 GLU A 583 VAL A 590 1 8
SHEET 1 A 6 ARG A 386 SER A 389 0 SHEET 2 A 6 ALA A 275 VAL A 278 -1 N LEU A 276 O TYR A 388 SHEET 3 A 6 GLU A 434 GLU A 440 -1 N PHE A 438 O GLY A 277 SHEET 4 A 6 LEU A 237 LYS A 246 -1 O LEU A 237 N VAL A 437 SHEET 5 A 6 VAL A 256 ASP A 262 -1 N HIS A 258 O GLN A 245 SHEET 6 A 6 GLU A 400 GLY A 406 -1 N VAL A 401 O ILE A 261 SHEET 1 B 2 PRO A 301 VAL A 304 0 SHEET 1 C 2 ARG A 409 VAL A 412 0 SHEET 2 C 2 ARG A 415 ALA A 418 -1 N ARG A 415 O VAL A 412 SHEET 1 D 5 ARG A 513 TRP A 518 0 SHEET 2 D 5 ASN A 483 ASN A 489 1 O ASN A 483 N ARG A 513 SHEET 3 D 5 VAL A 455 ILE A 458 1 O VAL A 455 N TRP A 484 SHEET 4 D 5 HIS A 548 ASP A 554 1 O HIS A 548 N ILE A 456 SHEET 5 D 5 TYR A 594 TYR A 599 1 N GLN A 595 O ILE A 549
SITE 1 AC1 28 THR A 322 VAL A 323 ALA A 356 ARG A 386 SITE 2 AC1 28 LEU A 387 TYR A 388 SER A 389 THR A 404 SITE 3 AC1 28 VAL A 405 GLY A 406 TYR A 410 GLY A 419 SITE 4 AC1 28 GLY A 420 ALA A 421 SER A 422 THR A 462 SITE 5 AC1 28 ASP A 597 TYR A 599 HOH A 606 HOH A 609 SITE 6 AC1 28 HOH A 640 HOH A 651 HOH A 664 HOH A 698 SITE 7 AC1 28 HOH A 713 HOH A 810 HOH A 822 HOH A 896 SITE 1 AC2 12 LYS A 254 ASN A 489 SER A 519 ARG A 520 SITE 2 AC2 12 LYS A 525 TYR A 527 GLN A 529 MET A 558 SITE 3 AC2 12 ASP A 561 HOH A 621 HOH A 781 HOH A 786
CRYST1 98.610 98.610 123.940 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010141 0.005855 0.000000 0.00000
SCALE2 0.000000 0.011710 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008068 0.00000