10 20 30 40 50 60 70 80 1DCL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNOGLOBULIN 16-OCT-95 1DCL
TITLE MCG, A LAMBDA V TYPE LIGHT-CHAIN DIMER (BENCE-JONES TITLE 2 PROTEIN), CRYSTALLIZED FROM AMMONIUM SULFATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MCG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BENCE-JONES PROTEIN; COMPND 5 OTHER_DETAILS: A LAMBDA V TYPE LIGHT-CHAIN DIMER
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS IMMUNOGLOBULIN, BENCE JONES, ANTIBODY, MULTIPLE QUATERNARY KEYWDS 2 STRUCTURES
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SCHIFFER,Z.B.XU
REVDAT 2 24-FEB-09 1DCL 1 VERSN REVDAT 1 15-MAY-97 1DCL 0
JRNL AUTH K.R.ELY,J.N.HERRON,M.HARKER,A.B.EDMUNDSON JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A LIGHT CHAIN DIMER JRNL TITL 2 CRYSTALLIZED IN WATER. CONFORMATIONAL FLEXIBILITY JRNL TITL 3 OF A MOLECULE IN TWO CRYSTAL FORMS. JRNL REF J.MOL.BIOL. V. 210 601 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2515285 JRNL DOI 10.1016/0022-2836(89)90135-6
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.B.XU,M.SCHIFFER REMARK 1 TITL THE REFINEMENT AND STRUCTURE OF MCG BENCE-JONES REMARK 1 TITL 2 DIMER AT 2.3 ANGSTROMS RESOLUTION REMARK 1 REF AM.CRYST.ASSOC.,ABSTR. V. 16 74 1988 REMARK 1 REF 2 PAPERS (ANNUAL MEETING) REMARK 1 REFN ISSN 0569-4221 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.SCHIFFER,R.L.GIRLING,K.R.ELY,A.B.EDMUNDSON REMARK 1 TITL STRUCTURE OF A LAMBDA-TYPE BENCE-JONES PROTEIN AT REMARK 1 TITL 2 3.5-A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 12 4620 1973 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.600 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DCL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED FROM AMMONIUM SULFATE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.96667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 666 O HOH A 787 1.89 REMARK 500 O HOH B 727 O HOH B 820 1.91 REMARK 500 NZ LYS A 160 O HOH A 775 1.91 REMARK 500 O HOH B 671 O HOH B 901 1.95 REMARK 500 O HOH A 613 O HOH B 545 2.01 REMARK 500 O HOH B 664 O HOH B 665 2.05 REMARK 500 OG SER A 9 O HOH A 709 2.09 REMARK 500 O HOH A 907 O HOH A 908 2.09 REMARK 500 O HOH B 617 O HOH B 920 2.10 REMARK 500 O LEU A 121 O HOH A 610 2.11 REMARK 500 N VAL B 48 O HOH B 719 2.11 REMARK 500 O HOH B 617 O HOH B 899 2.11 REMARK 500 O GLY A 15 O HOH A 712 2.13 REMARK 500 O HOH A 703 O HOH A 885 2.14 REMARK 500 OH TYR B 89 O HOH B 641 2.15 REMARK 500 O HOH A 839 O HOH A 929 2.16 REMARK 500 ND2 ASN B 174 O HOH B 541 2.19 REMARK 500 NZ LYS B 44 O HOH B 861 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 769 O HOH B 820 6656 0.99 REMARK 500 O HOH A 597 O HOH A 903 6656 1.69 REMARK 500 O HOH A 647 O HOH B 901 6656 1.76 REMARK 500 O HOH A 526 O SER B 216 3654 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 38 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ALA A 42 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 LEU A 75 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 LEU A 80 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 TYR A 93 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 VAL A 159 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 SER A 180 N - CA - CB ANGL. DEV. = 15.3 DEGREES REMARK 500 TYR A 181 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 181 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 193 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 CYS A 197 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 GLU A 202 OE1 - CD - OE2 ANGL. DEV. = -11.2 DEGREES REMARK 500 SER B 2 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 SER B 2 C - N - CA ANGL. DEV. = 26.9 DEGREES REMARK 500 SER B 27 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 63 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 LEU B 75 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 THR B 76 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 ASP B 87 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU B 110 CA - CB - CG ANGL. DEV. = 20.9 DEGREES REMARK 500 GLU B 127 CG - CD - OE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 LEU B 129 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP B 142 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR B 144 CA - CB - CG ANGL. DEV. = -11.7 DEGREES REMARK 500 SER B 169 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 SER B 169 N - CA - CB ANGL. DEV. = -10.1 DEGREES REMARK 500 ASN B 174 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU B 187 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU B 187 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU B 187 CG - CD - OE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 63.49 -101.51 REMARK 500 ALA A 3 140.47 8.15 REMARK 500 SER A 26 -131.84 -73.24 REMARK 500 ASN A 28 -30.53 101.31 REMARK 500 VAL A 29 -100.99 164.76 REMARK 500 TYR A 32 151.07 125.71 REMARK 500 ASN A 33 -15.85 -0.46 REMARK 500 TYR A 34 55.80 -96.14 REMARK 500 HIS A 41 174.56 -56.38 REMARK 500 VAL A 53 -45.21 63.38 REMARK 500 ASN A 54 25.43 -143.44 REMARK 500 SER A 58 105.91 90.83 REMARK 500 PRO A 61 -179.94 -56.02 REMARK 500 SER A 69 -81.30 -76.28 REMARK 500 ALA A 86 178.24 172.29 REMARK 500 TYR A 93 131.38 71.82 REMARK 500 SER A 96 -145.13 133.48 REMARK 500 LEU A 110 106.51 -38.40 REMARK 500 LYS A 160 -74.26 -73.77 REMARK 500 HIS A 201 89.75 -156.94 REMARK 500 THR A 213 -88.36 -120.29 REMARK 500 GLU A 214 -105.56 138.56 REMARK 500 CYS A 215 -55.97 120.46 REMARK 500 SER B 2 83.51 83.32 REMARK 500 ALA B 10 107.54 -160.89 REMARK 500 GLN B 16 -154.30 -79.55 REMARK 500 ASN B 28 -93.88 -128.15 REMARK 500 ASN B 33 53.80 -112.52 REMARK 500 VAL B 53 -69.76 68.03 REMARK 500 SER B 58 109.79 -59.20 REMARK 500 PRO B 61 -174.08 -61.28 REMARK 500 SER B 69 -88.27 -111.98 REMARK 500 GLU B 94 26.65 -145.85 REMARK 500 ASP B 97 -2.26 79.59 REMARK 500 THR B 103 177.72 -59.92 REMARK 500 ASN B 132 33.98 89.70 REMARK 500 ALA B 134 108.94 -161.80 REMARK 500 PRO B 145 -176.53 -57.91 REMARK 500 ASN B 174 58.02 37.84 REMARK 500 PRO B 212 35.66 -68.49 REMARK 500 GLU B 214 -52.87 -162.14 REMARK 500 CYS B 215 -18.43 104.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 580 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 605 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 9.59 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 10.41 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH B 590 DISTANCE = 72.69 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 9.26 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 640 DISTANCE = 11.44 ANGSTROMS REMARK 525 HOH B 598 DISTANCE = 77.62 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 645 DISTANCE = 10.52 ANGSTROMS REMARK 525 HOH B 612 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 9.92 ANGSTROMS REMARK 525 HOH B 624 DISTANCE = 77.28 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH B 634 DISTANCE = 73.98 ANGSTROMS REMARK 525 HOH B 635 DISTANCE = 10.94 ANGSTROMS REMARK 525 HOH B 639 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 644 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 659 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A 699 DISTANCE = 12.42 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 13.65 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH A 710 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A 711 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 9.78 ANGSTROMS REMARK 525 HOH B 693 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 723 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH B 697 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 698 DISTANCE = 11.38 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH B 720 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH B 729 DISTANCE = 66.35 ANGSTROMS REMARK 525 HOH B 731 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 736 DISTANCE = 9.14 ANGSTROMS REMARK 525 HOH B 737 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 742 DISTANCE = 9.11 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 10.82 ANGSTROMS REMARK 525 HOH B 747 DISTANCE = 71.28 ANGSTROMS REMARK 525 HOH B 749 DISTANCE = 10.73 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 74.98 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B 759 DISTANCE = 11.09 ANGSTROMS REMARK 525 HOH B 760 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 761 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH B 770 DISTANCE = 71.42 ANGSTROMS REMARK 525 HOH A 853 DISTANCE = 9.92 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 10.77 ANGSTROMS REMARK 525 HOH B 858 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A 893 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH B 873 DISTANCE = 9.39 ANGSTROMS REMARK 525 HOH A 903 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 874 DISTANCE = 74.56 ANGSTROMS REMARK 525 HOH B 876 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH B 880 DISTANCE = 66.00 ANGSTROMS REMARK 525 HOH B 881 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 10.24 ANGSTROMS REMARK 525 HOH B 901 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH B 921 DISTANCE = 13.28 ANGSTROMS REMARK 525 HOH B 924 DISTANCE = 15.23 ANGSTROMS REMARK 525 HOH B 927 DISTANCE = 8.81 ANGSTROMS REMARK 525 HOH B 928 DISTANCE = 75.85 ANGSTROMS REMARK 525 HOH B 930 DISTANCE = 9.63 ANGSTROMS
DBREF 1DCL A 2 216 UNP P01709 LV2F_HUMAN 21 235 DBREF 1DCL B 2 216 UNP P01709 LV2F_HUMAN 21 235
SEQADV 1DCL ILE A 20 UNP P01709 PHE 39 CONFLICT SEQADV 1DCL THR A 23 UNP P01709 SER 42 CONFLICT SEQADV 1DCL ASN A 28 UNP P01709 ASP 47 CONFLICT SEQADV 1DCL VAL A 29 UNP P01709 ILE 48 CONFLICT SEQADV 1DCL GLY A 31 UNP P01709 ASN 50 CONFLICT SEQADV 1DCL GLN A 39 UNP P01709 ARG 58 CONFLICT SEQADV 1DCL ALA A 42 UNP P01709 PRO 61 CONFLICT SEQADV 1DCL VAL A 48 UNP P01709 LEU 67 CONFLICT SEQADV 1DCL ILE A 49 UNP P01709 MET 68 CONFLICT SEQADV 1DCL ASN A 54 UNP P01709 THR 73 CONFLICT SEQADV 1DCL ASP A 62 UNP P01709 ASN 81 CONFLICT SEQADV 1DCL GLU A 94 UNP P01709 ALA 113 CONFLICT SEQADV 1DCL ASP A 97 UNP P01709 ASN 116 CONFLICT SEQADV 1DCL ASN A 98 UNP P01709 SER 117 CONFLICT SEQADV 1DCL PHE A 99 UNP P01709 LEU 118 CONFLICT SEQADV 1DCL VAL A 100 UNP P01709 ILE 119 CONFLICT SEQADV 1DCL THR A 103 UNP P01709 GLY 122 CONFLICT SEQADV 1DCL LYS A 106 UNP P01709 ARG 125 CONFLICT SEQADV 1DCL VAL A 107 UNP P01709 LEU 126 CONFLICT SEQADV 1DCL ASN A 116 UNP P01709 ALA 135 CONFLICT SEQADV 1DCL THR A 118 UNP P01709 SER 137 CONFLICT SEQADV 1DCL GLY A 156 UNP P01709 SER 175 CONFLICT SEQADV 1DCL LYS A 167 UNP P01709 THR 186 CONFLICT SEQADV 1DCL ILE B 20 UNP P01709 PHE 39 CONFLICT SEQADV 1DCL THR B 23 UNP P01709 SER 42 CONFLICT SEQADV 1DCL ASN B 28 UNP P01709 ASP 47 CONFLICT SEQADV 1DCL VAL B 29 UNP P01709 ILE 48 CONFLICT SEQADV 1DCL GLY B 31 UNP P01709 ASN 50 CONFLICT SEQADV 1DCL GLN B 39 UNP P01709 ARG 58 CONFLICT SEQADV 1DCL ALA B 42 UNP P01709 PRO 61 CONFLICT SEQADV 1DCL VAL B 48 UNP P01709 LEU 67 CONFLICT SEQADV 1DCL ILE B 49 UNP P01709 MET 68 CONFLICT SEQADV 1DCL ASN B 54 UNP P01709 THR 73 CONFLICT SEQADV 1DCL ASP B 62 UNP P01709 ASN 81 CONFLICT SEQADV 1DCL GLU B 94 UNP P01709 ALA 113 CONFLICT SEQADV 1DCL ASP B 97 UNP P01709 ASN 116 CONFLICT SEQADV 1DCL ASN B 98 UNP P01709 SER 117 CONFLICT SEQADV 1DCL PHE B 99 UNP P01709 LEU 118 CONFLICT SEQADV 1DCL VAL B 100 UNP P01709 ILE 119 CONFLICT SEQADV 1DCL THR B 103 UNP P01709 GLY 122 CONFLICT SEQADV 1DCL LYS B 106 UNP P01709 ARG 125 CONFLICT SEQADV 1DCL VAL B 107 UNP P01709 LEU 126 CONFLICT SEQADV 1DCL ASN B 116 UNP P01709 ALA 135 CONFLICT SEQADV 1DCL THR B 118 UNP P01709 SER 137 CONFLICT SEQADV 1DCL GLY B 156 UNP P01709 SER 175 CONFLICT SEQADV 1DCL LYS B 167 UNP P01709 THR 186 CONFLICT
SEQRES 1 A 216 PRO SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 A 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 A 216 SER ASN VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 A 216 GLN HIS ALA GLY LYS ALA PRO LYS VAL ILE ILE TYR GLU SEQRES 5 A 216 VAL ASN LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 A 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 A 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 A 216 SER TYR GLU GLY SER ASP ASN PHE VAL PHE GLY THR GLY SEQRES 9 A 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 A 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 A 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 A 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 A 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 A 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 A 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 A 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 A 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 216 PRO SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 B 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 B 216 SER ASN VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 B 216 GLN HIS ALA GLY LYS ALA PRO LYS VAL ILE ILE TYR GLU SEQRES 5 B 216 VAL ASN LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 B 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 B 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 B 216 SER TYR GLU GLY SER ASP ASN PHE VAL PHE GLY THR GLY SEQRES 9 B 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 B 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 B 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 B 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 B 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 B 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 B 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 B 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 B 216 THR VAL ALA PRO THR GLU CYS SER
FORMUL 3 HOH *413(H2 O)
HELIX 1 1 ALA A 82 ASP A 84 5 3 HELIX 2 2 SER A 126 LEU A 129 1 4 HELIX 3 3 PRO A 186 SER A 191 1 6 HELIX 4 4 SER B 126 ALA B 131 1 6 HELIX 5 5 PRO B 186 SER B 191 1 6
SHEET 1 A 5 SER A 9 GLY A 12 0 SHEET 2 A 5 THR A 105 VAL A 109 1 N LYS A 106 O ALA A 10 SHEET 3 A 5 ALA A 86 SER A 92 -1 N TYR A 88 O THR A 105 SHEET 4 A 5 VAL A 35 GLN A 40 -1 N GLN A 40 O ASP A 87 SHEET 5 A 5 LYS A 47 ILE A 50 -1 N ILE A 50 O TRP A 37 SHEET 1 B 3 VAL A 18 THR A 23 0 SHEET 2 B 3 THR A 72 VAL A 77 -1 N VAL A 77 O VAL A 18 SHEET 3 B 3 PHE A 64 LYS A 68 -1 N SER A 67 O SER A 74 SHEET 1 C 4 THR A 118 PHE A 122 0 SHEET 2 C 4 ALA A 134 PHE A 143 -1 N SER A 141 O THR A 118 SHEET 3 C 4 TYR A 176 LEU A 184 -1 N LEU A 184 O ALA A 134 SHEET 4 C 4 VAL A 163 THR A 165 -1 N GLU A 164 O TYR A 181 SHEET 1 D 3 THR A 149 ALA A 154 0 SHEET 2 D 3 SER A 194 THR A 200 -1 N THR A 200 O THR A 149 SHEET 3 D 3 THR A 205 ALA A 211 -1 N VAL A 210 O TYR A 195 SHEET 1 E 3 SER B 17 THR B 23 0 SHEET 2 E 3 THR B 72 SER B 78 -1 N VAL B 77 O VAL B 18 SHEET 3 E 3 PHE B 64 LYS B 68 -1 N SER B 67 O SER B 74 SHEET 1 F 4 PHE B 99 PHE B 101 0 SHEET 2 F 4 ASP B 87 TYR B 93 -1 N SER B 92 O VAL B 100 SHEET 3 F 4 VAL B 35 GLN B 40 -1 N GLN B 40 O ASP B 87 SHEET 4 F 4 PRO B 46 ILE B 50 -1 N ILE B 50 O TRP B 37 SHEET 1 G 4 THR B 118 PHE B 122 0 SHEET 2 G 4 ALA B 134 PHE B 143 -1 N SER B 141 O THR B 118 SHEET 3 G 4 TYR B 176 LEU B 184 -1 N LEU B 184 O ALA B 134 SHEET 4 G 4 VAL B 163 THR B 165 -1 N GLU B 164 O TYR B 181 SHEET 1 H 4 SER B 157 VAL B 159 0 SHEET 2 H 4 VAL B 148 ALA B 154 -1 N ALA B 154 O SER B 157 SHEET 3 H 4 TYR B 195 HIS B 201 -1 N THR B 200 O THR B 149 SHEET 4 H 4 SER B 204 VAL B 210 -1 N VAL B 210 O TYR B 195
SSBOND 1 CYS A 22 CYS A 90 1555 1555 1.95 SSBOND 2 CYS A 138 CYS A 197 1555 1555 2.11 SSBOND 3 CYS A 215 CYS B 215 1555 1555 2.26 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.31 SSBOND 5 CYS B 138 CYS B 197 1555 1555 2.07
CISPEP 1 TYR A 144 PRO A 145 0 -1.51 CISPEP 2 TYR B 144 PRO B 145 0 -3.14
CRYST1 72.300 72.300 185.900 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013831 0.007985 0.000000 0.00000
SCALE2 0.000000 0.015971 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005379 0.00000