10 20 30 40 50 60 70 80 1D6X - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 15-OCT-99 1D6X
TITLE THE STRUCTURE OF THE ANTIMICROBIAL PEPTIDE TRITRPTICIN TITLE 2 BOUND TO MICELLES-A DISTINCT MEMBRANE-BOUND PEPTIDE FOLD
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIMICROBIAL PEPTIDE, TRITRPTICIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SYNTHETIC CATHELICIDIN FRAGMENT; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE, SEQUENCE FROM A FRAGMENT SOURCE 4 OF A PORCINE NEUTROPHIL CATHELICIDIN
KEYWDS TYPE IV TURN-TYPE III TURN, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 19
MDLTYP MINIMIZED AVERAGE
AUTHOR D.J.SCHIBLI,P.M.HWANG,H.J.VOGEL
REVDAT 2 24-FEB-09 1D6X 1 VERSN REVDAT 1 03-JAN-00 1D6X 0
JRNL AUTH D.J.SCHIBLI,P.M.HWANG,H.J.VOGEL JRNL TITL STRUCTURE OF THE ANTIMICROBIAL PEPTIDE TRITRPTICIN JRNL TITL 2 BOUND TO MICELLES: A DISTINCT MEMBRANE-BOUND JRNL TITL 3 PEPTIDE FOLD. JRNL REF BIOCHEMISTRY V. 38 16749 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10606506 JRNL DOI 10.1021/BI990701C
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LAWYER,S.PAI,M.WATABE,P.BORGIA,T.MASHIMO, REMARK 1 AUTH 2 L.EAGLETON,K.WATABE REMARK 1 TITL ANTIMICROBIAL ACTIVITY OF A 13 AMINO ACID REMARK 1 TITL 2 TRYPTOPHAN-RICH PEPTIDE DERIVED FROM A PUTATIVE REMARK 1 TITL 3 PORCINE PRECURSOR PROTEIN OF A NOVEL FAMILY OF REMARK 1 TITL 4 ANTIBACTERIAL PEPTIDES REMARK 1 REF FEBS LETT. V. 390 95 1996 REMARK 1 REFN ISSN 0014-5793 REMARK 1 DOI 10.1016/0014-5793(96)00637-0
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE- REMARK 3 KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, REMARK 3 READ, RICE, SIMONSON, WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 163 REMARK 3 INTERPROTON RESTRAINTS. OF THESE 47 WERE INTRARESIDUE, 50 REMARK 3 SEQUENTIAL, AND 66 SHORT-RANGE
REMARK 4 REMARK 4 1D6X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-99. REMARK 100 THE RCSB ID CODE IS RCSB009849.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 400 MM SDS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM TRITRPTICIN, 400 MM REMARK 210 PERDEUTERATED SDS; 3 MM REMARK 210 TRITRPTICIN, 400 MM REMARK 210 PERDEUTERATED SDS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 5.0 REMARK 210 METHOD USED : RESTRAINED SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 97 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 -38.18 -175.07 REMARK 500 1 PHE A 4 96.81 -34.73 REMARK 500 1 PRO A 5 -148.31 -66.58 REMARK 500 1 PRO A 9 -33.50 -34.83 REMARK 500 1 ARG A 12 -69.61 -175.16 REMARK 500 2 PHE A 4 92.66 -34.50 REMARK 500 2 TRP A 6 -29.24 -34.85 REMARK 500 2 PRO A 9 -38.49 -39.91 REMARK 500 2 LEU A 11 -179.32 -52.52 REMARK 500 3 PHE A 4 96.89 -35.53 REMARK 500 3 PRO A 5 -149.44 -67.51 REMARK 500 3 PRO A 9 -31.93 -35.00 REMARK 500 4 PHE A 4 95.87 -34.83 REMARK 500 4 PRO A 5 -147.83 -68.69 REMARK 500 4 PRO A 9 -31.73 -36.59 REMARK 500 5 ARG A 3 -46.09 -175.15 REMARK 500 5 PRO A 5 -143.18 -70.54 REMARK 500 5 PRO A 9 -33.37 -34.13 REMARK 500 5 ARG A 12 -67.49 -140.97 REMARK 500 6 PHE A 4 95.14 -34.93 REMARK 500 6 PRO A 5 -147.33 -69.80 REMARK 500 6 LEU A 11 -178.68 -52.75 REMARK 500 7 ARG A 3 39.07 -96.35 REMARK 500 7 PHE A 4 95.62 -35.03 REMARK 500 7 PRO A 5 -150.83 -67.88 REMARK 500 7 PRO A 9 -32.28 -34.85 REMARK 500 7 ARG A 12 35.06 -161.16 REMARK 500 8 PHE A 4 95.90 -34.90 REMARK 500 8 PRO A 5 -149.19 -68.72 REMARK 500 8 PRO A 9 -32.64 -33.86 REMARK 500 8 ARG A 12 -61.54 -129.54 REMARK 500 9 PHE A 4 96.33 -35.71 REMARK 500 9 PRO A 5 -147.71 -68.92 REMARK 500 9 PRO A 9 -31.07 -34.05 REMARK 500 10 ARG A 3 59.65 -108.41 REMARK 500 10 PHE A 4 95.14 -34.76 REMARK 500 10 PRO A 5 -147.77 -69.58 REMARK 500 10 LEU A 11 -78.64 -48.45 REMARK 500 10 ARG A 12 -76.66 -59.22 REMARK 500 11 ARG A 3 42.46 -96.98 REMARK 500 11 PHE A 4 95.82 -34.94 REMARK 500 11 PRO A 5 -150.06 -67.50 REMARK 500 11 PRO A 9 -32.22 -34.79 REMARK 500 12 PHE A 4 95.22 -34.73 REMARK 500 12 PRO A 5 -149.83 -69.06 REMARK 500 12 PRO A 9 -32.47 -34.73 REMARK 500 12 ARG A 12 124.16 -175.05 REMARK 500 13 ARG A 2 -176.30 -60.00 REMARK 500 13 ARG A 3 30.51 -153.20 REMARK 500 13 PHE A 4 95.73 -34.93 REMARK 500 13 PRO A 5 -148.20 -69.15 REMARK 500 13 PRO A 9 -33.13 -34.80 REMARK 500 13 ARG A 12 145.29 -175.14 REMARK 500 14 PHE A 4 95.65 -34.81 REMARK 500 14 PRO A 5 -149.50 -68.05 REMARK 500 14 PRO A 9 -33.88 -35.00 REMARK 500 14 ARG A 12 -47.00 -152.90 REMARK 500 15 ARG A 3 70.41 -68.98 REMARK 500 15 PHE A 4 95.62 -34.87 REMARK 500 15 PRO A 5 -146.22 -69.62 REMARK 500 15 PRO A 9 -32.38 -34.41 REMARK 500 16 ARG A 2 170.19 -59.06 REMARK 500 16 PHE A 4 96.19 -34.88 REMARK 500 16 PRO A 5 -147.51 -69.70 REMARK 500 16 PRO A 9 -33.61 -34.54 REMARK 500 17 ARG A 3 -37.02 -175.06 REMARK 500 17 PHE A 4 96.61 -34.91 REMARK 500 17 PRO A 5 -149.91 -66.76 REMARK 500 17 PRO A 9 -31.59 -35.84 REMARK 500 17 LEU A 11 38.31 -87.94 REMARK 500 18 PHE A 4 96.15 -35.44 REMARK 500 18 PRO A 5 -147.28 -69.31 REMARK 500 18 PRO A 9 -32.21 -34.54 REMARK 500 19 ARG A 2 -168.82 -59.69 REMARK 500 19 ARG A 3 29.84 -154.52 REMARK 500 19 PHE A 4 98.70 -38.65 REMARK 500 19 PRO A 5 -87.34 -63.64 REMARK 500 19 TRP A 6 -35.55 -175.33 REMARK 500 19 PRO A 9 -33.63 -35.05 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1D6X A 1 13 PDB 1D6X 1D6X 1 13
SEQRES 1 A 13 VAL ARG ARG PHE PRO TRP TRP TRP PRO PHE LEU ARG ARG
HELIX 1 1 TRP A 7 LEU A 11 5 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000