10 20 30 40 50 60 70 80 1D3Z - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 01-OCT-99 1D3Z
TITLE UBIQUITIN NMR STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (UBIQUITIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS UBIQUITIN NMR LIQUID CRYSTAL DIPOLAR COUPLING, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR G.CORNILESCU,J.L.MARQUARDT,M.OTTIGER,A.BAX
REVDAT 2 24-FEB-09 1D3Z 1 VERSN REVDAT 1 14-OCT-99 1D3Z 0
JRNL AUTH G.CORNILESCU,J.L.MARQUARDT,M.OTTIGER,A.BAX JRNL TITL VALIDATION OF PROTEIN STRUCTURE FROM ANISOTROPIC JRNL TITL 2 CARBONYL CHEMICAL SHIFTS IN A DILUTE LIQUID JRNL TITL 3 CRYSTALLINE PHASE JRNL REF J.AM.CHEM.SOC. V. 120 6836 1998 JRNL REFN ISSN 0002-7863 JRNL DOI 10.1021/JA9812610
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.840 REMARK 3 AUTHORS : BRUNGER ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1D3Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-99. REMARK 100 THE RCSB ID CODE IS RCSB009773.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UBIQUITIN HUMAN SEQUENCE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 4D_ REMARK 210 13C-SEPARATED_NOESY, 4D_13C/ REMARK 210 15N-SEPARATED_NOESY, MORE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.840, NMRPIPE 1.70 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 54 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DIPOLAR COUPLINGS MEASURED IN 2 LIQUID CRYSTAL MEDIA. REMARK 210 OTTIGER ET AL., JACS 120, 12334-12341 (1998).
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 7 ARG A 74 82.37 60.02 REMARK 500 8 ARG A 72 74.50 -105.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 54 0.15 SIDE_CHAIN REMARK 500 1 ARG A 72 0.25 SIDE_CHAIN REMARK 500 1 ARG A 74 0.30 SIDE_CHAIN REMARK 500 2 ARG A 42 0.31 SIDE_CHAIN REMARK 500 2 ARG A 54 0.16 SIDE_CHAIN REMARK 500 2 ARG A 72 0.28 SIDE_CHAIN REMARK 500 2 ARG A 74 0.29 SIDE_CHAIN REMARK 500 3 ARG A 42 0.23 SIDE_CHAIN REMARK 500 3 ARG A 54 0.18 SIDE_CHAIN REMARK 500 3 ARG A 72 0.30 SIDE_CHAIN REMARK 500 3 ARG A 74 0.29 SIDE_CHAIN REMARK 500 4 ARG A 42 0.30 SIDE_CHAIN REMARK 500 4 ARG A 72 0.31 SIDE_CHAIN REMARK 500 5 ARG A 42 0.30 SIDE_CHAIN REMARK 500 5 ARG A 54 0.28 SIDE_CHAIN REMARK 500 5 ARG A 72 0.21 SIDE_CHAIN REMARK 500 5 ARG A 74 0.19 SIDE_CHAIN REMARK 500 6 ARG A 42 0.17 SIDE_CHAIN REMARK 500 6 ARG A 54 0.24 SIDE_CHAIN REMARK 500 6 ARG A 72 0.13 SIDE_CHAIN REMARK 500 6 ARG A 74 0.30 SIDE_CHAIN REMARK 500 7 ARG A 42 0.10 SIDE_CHAIN REMARK 500 7 ARG A 54 0.16 SIDE_CHAIN REMARK 500 7 ARG A 72 0.24 SIDE_CHAIN REMARK 500 7 ARG A 74 0.29 SIDE_CHAIN REMARK 500 8 ARG A 42 0.08 SIDE_CHAIN REMARK 500 8 ARG A 54 0.19 SIDE_CHAIN REMARK 500 8 ARG A 72 0.19 SIDE_CHAIN REMARK 500 8 ARG A 74 0.30 SIDE_CHAIN REMARK 500 9 ARG A 42 0.11 SIDE_CHAIN REMARK 500 9 ARG A 54 0.17 SIDE_CHAIN REMARK 500 9 ARG A 72 0.26 SIDE_CHAIN REMARK 500 9 ARG A 74 0.30 SIDE_CHAIN REMARK 500 10 ARG A 42 0.12 SIDE_CHAIN REMARK 500 10 ARG A 54 0.19 SIDE_CHAIN REMARK 500 10 ARG A 72 0.27 SIDE_CHAIN REMARK 500 10 ARG A 74 0.29 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB
DBREF 1D3Z A 1 76 UNP P62988 UBIQ_HUMAN 136 211
SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY
HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5
SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 O ILE A 3 N LEU A 15 SHEET 3 A 5 THR A 66 LEU A 71 1 N LEU A 67 O PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000