10 20 30 40 50 60 70 80 1D1I - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 17-SEP-99 1D1I
TITLE MUTATED SHIGA-LIKE TOXIN B SUBUNIT (W34A) COMPLEXED WITH TITLE 2 RECEPTOR GB3 ANALOGUE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIGA TOXIN B-CHAIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: SHIGA TOXIN I BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS TOXIN, RECEPTOR BINDING, PROTEIN-CARBOHYDRATE RECOGNITION, KEYWDS 2 OB-FOLD
EXPDTA X-RAY DIFFRACTION
AUTHOR H.LING,A.BOODHOO,J.L.BRUNTON,R.J.READ
REVDAT 3 01-SEP-09 1D1I 1 HET REVDAT 2 24-FEB-09 1D1I 1 VERSN REVDAT 1 20-SEP-00 1D1I 0
JRNL AUTH H.LING,A.BOODHOO,J.L.BRUNTON,R.J.READ JRNL TITL MUTATED SHIGA-LIKE TOXIN B SUBUNIT (W34A) COMPLEXED JRNL TITL 2 WITH RECEPTOR GB3 ANALOGUE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 36339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS THROUGH WHOLE REMARK 3 RESOLUTION RANGE REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 193 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MAXIMUM LIKELIHOOD F TARGET, WITH NCS RESTRAINTS, REMARK 3 BULK SOLVENT CORRECTION
REMARK 4 REMARK 4 1D1I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-99. REMARK 100 THE RCSB ID CODE IS RCSB009707.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-97 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200HB REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36339 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.36 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (NH4)2SO4, 5% PROPANOL, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMOPENTAMER, ACTIVE AS A PENTAMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 109 CB VAL A 109 CG2 -0.144 REMARK 500 HIS A 158 NE2 HIS A 158 CD2 -0.085 REMARK 500 HIS B 258 NE2 HIS B 258 CD2 -0.074 REMARK 500 HIS C 358 NE2 HIS C 358 CD2 -0.087 REMARK 500 HIS D 458 NE2 HIS D 458 CD2 -0.067 REMARK 500 HIS E 558 NE2 HIS E 558 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 111 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU A 129 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 169 CD - NE - CZ ANGL. DEV. = 31.4 DEGREES REMARK 500 ARG A 169 NE - CZ - NH1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR B 211 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 269 CD - NE - CZ ANGL. DEV. = 31.2 DEGREES REMARK 500 ARG B 269 NE - CZ - NH1 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = -13.1 DEGREES REMARK 500 TYR C 311 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU C 329 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG C 333 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 369 CD - NE - CZ ANGL. DEV. = 23.2 DEGREES REMARK 500 ARG C 369 NE - CZ - NH1 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG C 369 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TYR D 411 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU D 429 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG D 469 CD - NE - CZ ANGL. DEV. = 23.6 DEGREES REMARK 500 ARG D 469 NE - CZ - NH1 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG D 469 NE - CZ - NH2 ANGL. DEV. = 8.4 DEGREES REMARK 500 TYR E 511 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG E 569 CD - NE - CZ ANGL. DEV. = 23.5 DEGREES REMARK 500 ARG E 569 NE - CZ - NH1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG E 569 NE - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 256 64.52 -100.61 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA A 170 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 171 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA A 190 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 191 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC A 192 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA B 290 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL B 291 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC B 292 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA C 390 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL C 391 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC C 392 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA D 490 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL D 491 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC D 492 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLA E 590 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL E 591 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC E 592
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BOS RELATED DB: PDB REMARK 900 1BOS CONAINS THE WILD TYPE PROTEIN IN COMPLEXED WITH THE REMARK 900 SAME TRISACCHARIDE.
DBREF 1D1I A 101 169 UNP P08027 SLTB_BPH30 21 89 DBREF 1D1I B 201 269 UNP P08027 SLTB_BPH30 21 89 DBREF 1D1I C 301 369 UNP P08027 SLTB_BPH30 21 89 DBREF 1D1I D 401 469 UNP P08027 SLTB_BPH30 21 89 DBREF 1D1I E 501 569 UNP P08027 SLTB_BPH30 21 89
SEQADV 1D1I ALA A 134 UNP P08027 TRP 54 ENGINEERED SEQADV 1D1I ALA B 234 UNP P08027 TRP 54 ENGINEERED SEQADV 1D1I ALA C 334 UNP P08027 TRP 54 ENGINEERED SEQADV 1D1I ALA D 434 UNP P08027 TRP 54 ENGINEERED SEQADV 1D1I ALA E 534 UNP P08027 TRP 54 ENGINEERED
SEQRES 1 A 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 A 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 A 69 LYS GLU LEU PHE THR ASN ARG ALA ASN LEU GLN SER LEU SEQRES 4 A 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 A 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 A 69 VAL ILE PHE ARG SEQRES 1 B 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 B 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 B 69 LYS GLU LEU PHE THR ASN ARG ALA ASN LEU GLN SER LEU SEQRES 4 B 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 B 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 B 69 VAL ILE PHE ARG SEQRES 1 C 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 C 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 C 69 LYS GLU LEU PHE THR ASN ARG ALA ASN LEU GLN SER LEU SEQRES 4 C 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 C 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 C 69 VAL ILE PHE ARG SEQRES 1 D 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 D 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 D 69 LYS GLU LEU PHE THR ASN ARG ALA ASN LEU GLN SER LEU SEQRES 4 D 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 D 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 D 69 VAL ILE PHE ARG SEQRES 1 E 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 E 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 E 69 LYS GLU LEU PHE THR ASN ARG ALA ASN LEU GLN SER LEU SEQRES 4 E 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 E 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 E 69 VAL ILE PHE ARG
HET GLA A 170 11 HET GAL A 171 12 HET GLA A 190 11 HET GAL A 191 11 HET BGC A 192 12 HET GLA B 290 11 HET GAL B 291 11 HET BGC B 292 12 HET GLA C 390 11 HET GAL C 391 11 HET BGC C 392 12 HET GLA D 490 11 HET GAL D 491 11 HET BGC D 492 12 HET GLA E 590 11 HET GAL E 591 11 HET BGC E 592 12
HETNAM GLA ALPHA D-GALACTOSE HETNAM GAL BETA-D-GALACTOSE HETNAM BGC BETA-D-GLUCOSE
FORMUL 6 GLA 6(C6 H12 O6) FORMUL 6 GAL 6(C6 H12 O6) FORMUL 7 BGC 5(C6 H12 O6) FORMUL 12 HOH *196(H2 O)
HELIX 1 1 ALA A 134 THR A 146 1 13 HELIX 2 2 ALA B 234 THR B 246 5 13 HELIX 3 3 ALA C 334 THR C 346 5 13 HELIX 4 4 ALA D 434 THR D 446 5 13 HELIX 5 5 ALA E 534 THR E 546 1 13
SHEET 1 A 3 LYS A 127 THR A 131 0 SHEET 2 A 3 PHE A 120 VAL A 124 -1 N VAL A 124 O LYS A 127 SHEET 3 A 3 VAL A 109 TYR A 114 -1 N LYS A 113 O THR A 121 SHEET 1 B 3 GLU A 165 ARG A 169 0 SHEET 2 B 3 THR A 149 LYS A 153 -1 N LYS A 153 O GLU A 165 SHEET 3 B 3 ASP A 103 LYS A 108 -1 N GLY A 107 O VAL A 150 SHEET 1 C 3 LYS B 227 THR B 231 0 SHEET 2 C 3 PHE B 220 VAL B 224 -1 N VAL B 224 O LYS B 227 SHEET 3 C 3 VAL B 209 TYR B 214 -1 N LYS B 213 O THR B 221 SHEET 1 D 3 GLU B 265 ARG B 269 0 SHEET 2 D 3 THR B 249 LYS B 253 -1 N LYS B 253 O GLU B 265 SHEET 3 D 3 ASP B 203 LYS B 208 -1 N GLY B 207 O VAL B 250 SHEET 1 E 3 TYR C 311 TYR C 314 0 SHEET 2 E 3 PHE C 320 VAL C 324 -1 N LYS C 323 O TYR C 311 SHEET 3 E 3 LYS C 327 THR C 331 -1 N THR C 331 O PHE C 320 SHEET 1 F 3 GLU C 365 ARG C 369 0 SHEET 2 F 3 THR C 349 LYS C 353 -1 N LYS C 353 O GLU C 365 SHEET 3 F 3 ASP C 303 LYS C 308 -1 N GLY C 307 O VAL C 350 SHEET 1 G 3 LYS D 427 THR D 431 0 SHEET 2 G 3 PHE D 420 VAL D 424 -1 N VAL D 424 O LYS D 427 SHEET 3 G 3 VAL D 409 TYR D 414 -1 N LYS D 413 O THR D 421 SHEET 1 H 3 GLU D 465 ARG D 469 0 SHEET 2 H 3 THR D 449 LYS D 453 -1 N LYS D 453 O GLU D 465 SHEET 3 H 3 ASP D 403 LYS D 408 -1 N GLY D 407 O VAL D 450 SHEET 1 I 3 LYS E 527 THR E 531 0 SHEET 2 I 3 PHE E 520 VAL E 524 -1 N VAL E 524 O LYS E 527 SHEET 3 I 3 VAL E 509 TYR E 514 -1 N LYS E 513 O THR E 521 SHEET 1 J 3 GLU E 565 ARG E 569 0 SHEET 2 J 3 THR E 549 LYS E 553 -1 N LYS E 553 O GLU E 565 SHEET 3 J 3 ASP E 503 LYS E 508 -1 N GLY E 507 O VAL E 550
SSBOND 1 CYS A 104 CYS A 157 1555 1555 2.06 SSBOND 2 CYS B 204 CYS B 257 1555 1555 2.04 SSBOND 3 CYS C 304 CYS C 357 1555 1555 2.06 SSBOND 4 CYS D 404 CYS D 457 1555 1555 2.04 SSBOND 5 CYS E 504 CYS E 557 1555 1555 2.07
LINK C1 GLA A 170 O4 GAL A 171 1555 1555 1.41 LINK C1 GLA A 190 O4 GAL A 191 1555 1555 1.41 LINK C1 GAL A 191 O4 BGC A 192 1555 1555 1.39 LINK C1 GLA B 290 O4 GAL B 291 1555 1555 1.41 LINK C1 GAL B 291 O4 BGC B 292 1555 1555 1.39 LINK C1 GLA C 390 O4 GAL C 391 1555 1555 1.41 LINK C1 GAL C 391 O4 BGC C 392 1555 1555 1.40 LINK C1 GLA D 490 O4 GAL D 491 1555 1555 1.41 LINK C1 GAL D 491 O4 BGC D 492 1555 1555 1.39 LINK C1 GLA E 590 O4 GAL E 591 1555 1555 1.41 LINK C1 GAL E 591 O4 BGC E 592 1555 1555 1.40
SITE 1 AC1 5 ASN A 115 THR A 121 GLU A 128 GLY A 160 SITE 2 AC1 5 GAL A 171 SITE 1 AC2 5 ASP A 117 THR A 119 PHE A 130 GLY A 160 SITE 2 AC2 5 GLA A 170 SITE 1 AC3 10 THR A 131 ASN A 132 ARG A 133 PHE A 163 SITE 2 AC3 10 SER A 164 GAL A 191 HOH A 685 HOH A 733 SITE 3 AC3 10 HOH A 789 ASP B 216 SITE 1 AC4 7 THR A 154 ASN A 155 GLY A 162 GLA A 190 SITE 2 AC4 7 BGC A 192 HOH A 685 HOH A 716 SITE 1 AC5 6 ASN A 155 GAL A 191 HOH A 673 HOH A 685 SITE 2 AC5 6 HOH A 716 GLU D 428 SITE 1 AC6 12 THR B 231 ASN B 232 ARG B 233 GLY B 262 SITE 2 AC6 12 PHE B 263 SER B 264 GAL B 291 HOH B 627 SITE 3 AC6 12 HOH B 644 ASP C 316 HOH C 788 ARG D 469 SITE 1 AC7 11 THR B 254 ASN B 255 GLY B 262 GLA B 290 SITE 2 AC7 11 BGC B 292 HOH B 629 HOH B 637 HOH B 641 SITE 3 AC7 11 HOH B 644 HOH B 645 ILE E 545 SITE 1 AC8 6 ASN B 255 GAL B 291 HOH B 809 THR D 446 SITE 2 AC8 6 HOH D 831 ILE E 545 SITE 1 AC9 9 THR C 331 ASN C 332 ARG C 333 PHE C 363 SITE 2 AC9 9 SER C 364 GAL C 391 HOH C 620 HOH C 773 SITE 3 AC9 9 ASP D 416 SITE 1 BC1 9 THR C 354 ASN C 355 GLY C 362 GLA C 390 SITE 2 BC1 9 BGC C 392 HOH C 618 HOH C 620 HOH C 640 SITE 3 BC1 9 HOH C 811 SITE 1 BC2 8 GLU A 128 ASN C 355 GAL C 391 HOH C 618 SITE 2 BC2 8 HOH C 620 HOH C 631 HOH C 700 HOH E 696 SITE 1 BC3 11 ARG A 169 THR D 431 ASN D 432 ARG D 433 SITE 2 BC3 11 GLY D 462 PHE D 463 SER D 464 GAL D 491 SITE 3 BC3 11 HOH D 662 HOH D 708 ASP E 516 SITE 1 BC4 11 ILE B 245 HOH B 672 THR D 454 ASN D 455 SITE 2 BC4 11 GLY D 462 GLA D 490 BGC D 492 HOH D 658 SITE 3 BC4 11 HOH D 662 HOH D 674 HOH D 709 SITE 1 BC5 7 THR A 146 HOH A 807 ILE B 245 ASN D 455 SITE 2 BC5 7 GAL D 491 HOH D 660 HOH D 848 SITE 1 BC6 10 ASP A 116 THR E 531 ASN E 532 ARG E 533 SITE 2 BC6 10 GLY E 562 PHE E 563 SER E 564 GAL E 591 SITE 3 BC6 10 HOH E 648 HOH E 761 SITE 1 BC7 10 THR E 554 ASN E 555 GLY E 562 GLA E 590 SITE 2 BC7 10 BGC E 592 HOH E 635 HOH E 638 HOH E 648 SITE 3 BC7 10 HOH E 704 HOH E 739 SITE 1 BC8 7 GLU C 328 ASN E 555 ALA E 556 GAL E 591 SITE 2 BC8 7 HOH E 648 HOH E 739 HOH E 745
CRYST1 44.232 44.136 53.881 106.04 106.37 99.22 P 1 5
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022608 0.003672 0.008386 0.00000
SCALE2 0.000000 0.022954 0.008284 0.00000
SCALE3 0.000000 0.000000 0.020565 0.00000