10 20 30 40 50 60 70 80 1CXV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 30-AUG-99 1CXV
TITLE STRUCTURE OF RECOMBINANT MOUSE COLLAGENASE-3 (MMP-13)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (COLLAGENASE-3); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE, MMP-13; COMPND 6 EC: 3.4.24.-
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090
KEYWDS METALLOPROTEASE, GLYCOPROTEIN, COLLAGEN DEGRADATION, KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR I.BOTOS,E.MEYER,S.M.SWANSON,V.LEMAITRE,Y.EECKHOUT,E.F.MEYER
REVDAT 2 24-FEB-09 1CXV 1 VERSN REVDAT 1 30-AUG-00 1CXV 0
JRNL AUTH I.BOTOS,E.MEYER,S.M.SWANSON,V.LEMAITRE,Y.EECKHOUT, JRNL AUTH 2 E.F.MEYER JRNL TITL STRUCTURE OF RECOMBINANT MOUSE COLLAGENASE-3 JRNL TITL 2 (MMP-13). JRNL REF J.MOL.BIOL. V. 292 837 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10525409 JRNL DOI 10.1006/JMBI.1999.3068
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.LOVEJOY,A.R.WELCH,S.CARR,C.LUONG,C.BROKA, REMARK 1 AUTH 2 T.HENDRIKS,J.A.CAMPBELL,K.A.M.WALKER,R.MARTIN, REMARK 1 AUTH 3 W.H.VAN,M.F.BROWNER REMARK 1 TITL CRYSTAL STRUCTURES OF MMP-1 AND-13 REVEAL THE REMARK 1 TITL 2 STRUCTURAL BASIS FOR SELECTIVITY OF COLLAGENASE REMARK 1 TITL 3 INHIBITORS REMARK 1 REF NAT.STRUCT.BIOL. V. 6 217 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/6657 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.LEMAITRE,A.JUNGBLUTH,Y.EECKHOUT REMARK 1 TITL THE RECOMBINANT CATALYTIC DOMAIN OF MOUSE REMARK 1 TITL 2 COLLAGENASE-3 DEPOLYMERIZES TYPE I COLLAGEN BY REMARK 1 TITL 3 CLEAVING ITS AMINOTELOPEPTIDES REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 230 202 1997 REMARK 1 REFN ISSN 0006-291X REMARK 1 DOI 10.1006/BBRC.1996.5924
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 490456.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 22560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2233 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2779 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 333 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 2.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 35.88 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : RS.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARA REMARK 3 PARAMETER FILE 4 : ZN.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : RS.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ZN.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1CXV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-99. REMARK 100 THE RCSB ID CODE IS RCSB009613.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.23000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 GLY B 527 REMARK 465 LYS B 528 REMARK 465 SER B 529 REMARK 465 HIS B 530
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 418 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 149 -125.86 38.65 REMARK 500 PHE A 154 31.85 -98.90 REMARK 500 PRO A 160 133.65 -39.89 REMARK 500 SER A 161 -172.70 66.38 REMARK 500 ASN A 173 -128.87 54.78 REMARK 500 SER A 189 -148.56 -103.76 REMARK 500 PRO A 221 22.68 -69.84 REMARK 500 LYS B 449 -126.70 40.08 REMARK 500 SER B 461 -170.23 66.25 REMARK 500 ASN B 473 -110.35 51.72 REMARK 500 SER B 489 -148.84 -101.73 REMARK 500 PRO B 521 20.32 -68.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 631 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH B 634 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 636 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A 650 DISTANCE = 10.78 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 672 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH B 668 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 694 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A 707 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B 691 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 698 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B 704 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH B 720 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH A 748 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 722 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH B 723 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 728 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B 733 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH B 744 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 749 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 795 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 9.84 ANGSTROMS REMARK 525 HOH A 831 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A 839 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 840 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH B 782 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 846 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH A 847 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 800 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH B 804 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 11.20 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 10.93 ANGSTROMS REMARK 525 HOH B 808 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 813 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH B 818 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A 887 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 888 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH B 837 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH B 850 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 918 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B 898 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH B 921 DISTANCE = 5.27 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBP A 10 O4 REMARK 620 2 HIS A 205 NE2 135.4 REMARK 620 3 CBP A 10 O1 73.3 99.7 REMARK 620 4 CBP A 10 N2 48.1 105.9 30.3 REMARK 620 5 HIS A 201 NE2 125.4 99.2 105.2 131.2 REMARK 620 6 HIS A 211 NE2 75.3 90.8 144.2 113.9 106.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 100.2 REMARK 620 3 HIS A 179 ND1 112.4 92.2 REMARK 620 4 HIS A 166 NE2 112.1 123.6 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 5 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 665 O REMARK 620 2 ASP A 141 O 58.1 REMARK 620 3 GLY A 171 O 136.8 159.3 REMARK 620 4 GLY A 175 O 63.5 75.2 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 7 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE2 REMARK 620 2 ASP A 181 OD2 86.7 REMARK 620 3 GLY A 159 O 82.6 96.1 REMARK 620 4 ASP A 158 OD1 173.7 93.5 91.2 REMARK 620 5 LEU A 163 O 100.7 88.1 174.8 85.6 REMARK 620 6 SER A 161 O 91.9 173.5 77.4 87.2 98.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 501 NE2 REMARK 620 2 HIS B 505 NE2 98.2 REMARK 620 3 HIS B 511 NE2 106.3 91.7 REMARK 620 4 CBP B 11 O4 123.9 137.8 76.0 REMARK 620 5 CBP B 11 O1 104.8 99.6 145.0 73.4 REMARK 620 6 CBP B 11 N2 130.5 106.9 114.7 48.4 30.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 479 ND1 REMARK 620 2 HIS B 451 NE2 110.1 REMARK 620 3 HIS B 466 NE2 110.8 111.8 REMARK 620 4 ASP B 453 OD2 92.8 105.1 124.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 6 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 475 O REMARK 620 2 HOH B 664 O 81.3 REMARK 620 3 ASP B 477 OD1 96.8 174.9 REMARK 620 4 ASN B 473 O 102.9 81.2 103.9 REMARK 620 5 ASP B 441 O 88.7 85.5 89.7 160.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 8 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 461 O REMARK 620 2 GLY B 459 O 74.7 REMARK 620 3 LEU B 463 O 102.3 171.7 REMARK 620 4 ASP B 481 OD2 163.1 89.2 93.0 REMARK 620 5 GLU B 484 OE2 92.9 80.0 108.0 89.3 REMARK 620 6 ASP B 458 OD1 83.6 84.2 87.8 89.7 164.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 5 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 6 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 7 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 8 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBP A 10 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBP B 11
DBREF 1CXV A 83 246 UNP P33435 MMP13_MOUSE 105 268 DBREF 1CXV B 383 546 UNP P33435 MMP13_MOUSE 105 268
SEQRES 1 A 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER GLN THR SEQRES 2 A 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 A 164 SER HIS SER GLU VAL GLU LYS ALA PHE ARG LYS ALA PHE SEQRES 4 A 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 A 164 ILE TYR ASP GLY THR ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 A 164 THR LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 A 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 A 164 THR SER SER SER LYS GLY TYR ASN LEU PHE ILE VAL ALA SEQRES 10 A 164 ALA HIS GLU LEU GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 A 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 A 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 A 164 GLN GLY ILE GLN PHE LEU TYR GLY SEQRES 1 B 164 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER GLN THR SEQRES 2 B 164 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 B 164 SER HIS SER GLU VAL GLU LYS ALA PHE ARG LYS ALA PHE SEQRES 4 B 164 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 B 164 ILE TYR ASP GLY THR ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 B 164 THR LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 164 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 B 164 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 B 164 THR SER SER SER LYS GLY TYR ASN LEU PHE ILE VAL ALA SEQRES 10 B 164 ALA HIS GLU LEU GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 B 164 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 B 164 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 B 164 GLN GLY ILE GLN PHE LEU TYR GLY
HET ZN A 1 1 HET ZN B 2 1 HET ZN A 3 1 HET ZN B 4 1 HET CA A 5 1 HET CA B 6 1 HET CA A 7 1 HET CA B 8 1 HET CBP A 10 28 HET CBP B 11 28
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CBP 2-{4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYL]- HETNAM 2 CBP TETRAHYDRO-PYRAN-4-YL}-N-HYDROXY-ACETAMIDE
FORMUL 3 ZN 4(ZN 2+) FORMUL 7 CA 4(CA 2+) FORMUL 11 CBP 2(C19 H20 CL N O6 S) FORMUL 13 HOH *321(H2 O)
HELIX 1 1 SER A 109 ASP A 126 1 18 HELIX 2 2 LEU A 195 GLY A 208 1 14 HELIX 3 3 PRO A 234 GLY A 246 1 13 HELIX 4 4 SER B 409 ASP B 426 1 18 HELIX 5 5 LEU B 495 GLY B 508 1 14 HELIX 6 6 PRO B 534 GLY B 546 1 13
SHEET 1 A 2 ASN A 84 VAL A 85 0 SHEET 2 A 2 LEU A 209 ASP A 210 -1 N ASP A 210 O ASN A 84 SHEET 1 B 5 ASN A 131 ARG A 134 0 SHEET 2 B 5 ASN A 96 ILE A 101 1 N LEU A 97 O ASN A 131 SHEET 3 B 5 ILE A 142 GLY A 147 1 O ILE A 142 N ARG A 100 SHEET 4 B 5 ALA A 178 ASP A 181 1 N ALA A 178 O MET A 143 SHEET 5 B 5 ALA A 165 ALA A 167 -1 O HIS A 166 N HIS A 179 SHEET 1 C 2 TRP A 186 THR A 187 0 SHEET 2 C 2 TYR A 193 ASN A 194 1 O TYR A 193 N THR A 187 SHEET 1 D 5 ASN B 431 ARG B 434 0 SHEET 2 D 5 ASN B 396 ILE B 401 1 N LEU B 397 O ASN B 431 SHEET 3 D 5 ILE B 442 GLY B 447 1 N ILE B 442 O THR B 398 SHEET 4 D 5 ALA B 478 ASP B 481 1 N ALA B 478 O MET B 443 SHEET 5 D 5 ALA B 465 ALA B 467 -1 O HIS B 466 N HIS B 479 SHEET 1 E 2 TRP B 486 THR B 487 0 SHEET 2 E 2 TYR B 493 ASN B 494 1 O TYR B 493 N THR B 487
LINK ZN ZN A 1 O4 CBP A 10 1555 1555 2.58 LINK ZN ZN A 1 NE2 HIS A 205 1555 1555 2.05 LINK ZN ZN A 1 O1 CBP A 10 1555 1555 2.10 LINK ZN ZN A 1 N2 CBP A 10 1555 1555 2.75 LINK ZN ZN A 1 NE2 HIS A 201 1555 1555 2.01 LINK ZN ZN A 1 NE2 HIS A 211 1555 1555 2.06 LINK ZN ZN A 3 NE2 HIS A 151 1555 1555 2.00 LINK ZN ZN A 3 OD2 ASP A 153 1555 1555 2.00 LINK ZN ZN A 3 ND1 HIS A 179 1555 1555 1.99 LINK ZN ZN A 3 NE2 HIS A 166 1555 1555 2.01 LINK CA CA A 5 O HOH A 665 1555 1555 2.88 LINK CA CA A 5 O ASP A 141 1555 1555 3.00 LINK CA CA A 5 O GLY A 171 1555 1555 2.61 LINK CA CA A 5 O GLY A 175 1555 1555 2.24 LINK CA CA A 7 OE2 GLU A 184 1555 1555 2.33 LINK CA CA A 7 OD2 ASP A 181 1555 1555 2.33 LINK CA CA A 7 O GLY A 159 1555 1555 2.25 LINK CA CA A 7 OD1 ASP A 158 1555 1555 2.54 LINK CA CA A 7 O LEU A 163 1555 1555 2.40 LINK CA CA A 7 O SER A 161 1555 1555 2.32 LINK ZN ZN B 2 NE2 HIS B 501 1555 1555 2.03 LINK ZN ZN B 2 NE2 HIS B 505 1555 1555 2.03 LINK ZN ZN B 2 NE2 HIS B 511 1555 1555 2.04 LINK ZN ZN B 2 O4 CBP B 11 1555 1555 2.58 LINK ZN ZN B 2 O1 CBP B 11 1555 1555 2.10 LINK ZN ZN B 2 N2 CBP B 11 1555 1555 2.74 LINK ZN ZN B 4 ND1 HIS B 479 1555 1555 2.06 LINK ZN ZN B 4 NE2 HIS B 451 1555 1555 1.97 LINK ZN ZN B 4 NE2 HIS B 466 1555 1555 2.02 LINK ZN ZN B 4 OD2 ASP B 453 1555 1555 1.93 LINK CA CA B 6 O GLY B 475 1555 1555 2.28 LINK CA CA B 6 O HOH B 664 1555 1555 2.46 LINK CA CA B 6 OD1 ASP B 477 1555 1555 2.63 LINK CA CA B 6 O ASN B 473 1555 1555 2.32 LINK CA CA B 6 O ASP B 441 1555 1555 2.51 LINK CA CA B 8 O SER B 461 1555 1555 2.31 LINK CA CA B 8 O GLY B 459 1555 1555 2.44 LINK CA CA B 8 O LEU B 463 1555 1555 2.22 LINK CA CA B 8 OD2 ASP B 481 1555 1555 2.38 LINK CA CA B 8 OE2 GLU B 484 1555 1555 2.21 LINK CA CA B 8 OD1 ASP B 458 1555 1555 2.62
SITE 1 AC1 4 CBP A 10 HIS A 201 HIS A 205 HIS A 211 SITE 1 AC2 4 CBP B 11 HIS B 501 HIS B 505 HIS B 511 SITE 1 AC3 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC4 4 HIS B 451 ASP B 453 HIS B 466 HIS B 479 SITE 1 AC5 6 TRP A 92 ASP A 141 GLY A 171 ASN A 173 SITE 2 AC5 6 GLY A 175 HOH A 665 SITE 1 AC6 5 ASP B 441 ASN B 473 GLY B 475 ASP B 477 SITE 2 AC6 5 HOH B 664 SITE 1 AC7 6 ASP A 158 GLY A 159 SER A 161 LEU A 163 SITE 2 AC7 6 ASP A 181 GLU A 184 SITE 1 AC8 6 ASP B 458 GLY B 459 SER B 461 LEU B 463 SITE 2 AC8 6 ASP B 481 GLU B 484 SITE 1 AC9 19 ZN A 1 TYR A 155 LEU A 163 LEU A 164 SITE 2 AC9 19 ALA A 165 ILE A 197 HIS A 201 GLU A 202 SITE 3 AC9 19 HIS A 205 HIS A 211 LEU A 218 PHE A 220 SITE 4 AC9 19 PRO A 221 ILE A 222 TYR A 223 THR A 224 SITE 5 AC9 19 HOH A 604 HOH A 773 HOH A 849 SITE 1 BC1 17 ZN B 2 LEU B 463 LEU B 464 ALA B 465 SITE 2 BC1 17 ILE B 497 HIS B 501 GLU B 502 HIS B 505 SITE 3 BC1 17 HIS B 511 LEU B 518 PHE B 520 PRO B 521 SITE 4 BC1 17 ILE B 522 TYR B 523 THR B 524 HOH B 738 SITE 5 BC1 17 HOH B 759
CRYST1 56.360 48.460 74.940 90.00 108.15 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017743 0.000000 0.005816 0.00000
SCALE2 0.000000 0.020636 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014043 0.00000