10 20 30 40 50 60 70 80 1CXR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 30-AUG-99 1CXR
TITLE AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE CALCULATION OF TITLE 2 CRAMBIN(S22/I25) WITH SELF-CORRECTING DISTANCE GEOMETRY TITLE 3 BASED NOAH/DIAMOD PROGRAMS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAMBIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISOFORM OF CRAMBIN (46 RESIDUES); COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; SOURCE 3 ORGANISM_TAXID: 3721; SOURCE 4 STRAIN: SUBSP. ABYSSINICA; SOURCE 5 ORGAN: SEED
KEYWDS CRAMBIN, CRAMBE ABYSSINICA, PLANT SEED PROTEIN FEB. 20, KEYWDS 2 1997, PLANT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR Y.XU,J.WU,D.GORENSTEIN,W.BRAUN
REVDAT 4 24-FEB-09 1CXR 1 VERSN REVDAT 3 01-APR-03 1CXR 1 JRNL REVDAT 2 01-NOV-99 1CXR 1 COMPND REVDAT 1 07-SEP-99 1CXR 0
JRNL AUTH Y.XU,J.WU,D.GORENSTEIN,W.BRAUN JRNL TITL AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE JRNL TITL 2 CALCULATION OF CRAMBIN(S22/I25) WITH THE JRNL TITL 3 SELF-CORRECTING DISTANCE GEOMETRY BASED JRNL TITL 4 NOAH/DIAMOD PROGRAMS. JRNL REF J.MAGN.RESON. V. 136 76 1999 JRNL REFN ISSN 0022-2364 JRNL PMID 9887292 JRNL DOI 10.1006/JMRE.1998.1616
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MUMENTHALER,W.BRAUN REMARK 1 TITL AUTOMATED ASSIGNMENT OF SIMULATED, EXPERIMENTAL REMARK 1 TITL 2 NOESY SPECTRA OF PROTEINS BY FEEDBACK FILTERING REMARK 1 TITL 3 AND SELF-CORRECTING DISTANCE GEOMETRY REMARK 1 REF J.MOL.BIOL. V. 254 465 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1995.0631 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MUMENTHALER,P.GUNTERT,W.BRAUN,K.WUTHRICH REMARK 1 TITL AUTOMATED COMBINED ASSIGNMENT OF NOESY SPECTRA AND REMARK 1 TITL 2 THREE-DIMENSIONAL PROTEIN STRUCTURE DETERMINATION REMARK 1 REF J.BIOMOL.NMR V. 10 351 1997 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1018383106236 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.XU,C. H.SCHEIN,W.BRAUN REMARK 1 TITL COMBINED AUTOMATED ASSIGNMENT OF NMR SPECTRA AND REMARK 1 TITL 2 CALCULATION OF THREE- DIMENSIONAL PROTEIN REMARK 1 TITL 3 STRUCTURES REMARK 1 REF BIOLOGICAL MAGNETIC V. 17 37 1999 REMARK 1 REF 2 RESONANCE REMARK 1 PUBL KLUWER/ACADEMIC/PLENUM PUBLISHERS REMARK 1 REFERENCE 4 REMARK 1 AUTH TH.SCHAUMANN,W.BRAUN,K.WUTHRICH REMARK 1 TITL A PROGRAM, FANTOM, FOR ENERGY REFINEMENT OF REMARK 1 TITL 2 POLYPEPTIDES AND PROTEINS USING A NEWTON-RAPHSON REMARK 1 TITL 3 MINIMIZER IN THE TORSION ANGLE SPACE REMARK 1 REF BIOPOLYMERS V. 29 679 1990 REMARK 1 REFN ISSN 0006-3525 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.FRACZKIEWICZ,W.BRAUN REMARK 1 TITL EXACT AND EFFICIENT ANALYTICAL CALCULATION OF THE REMARK 1 TITL 2 ACCESSIBLE SURFACE AREAS AND THEIR GRADIENTS REMARK 1 TITL 3 MACROMOLECULES REMARK 1 REF J.COMPUT.CHEM. V. 19 319 1998 REMARK 1 REFN ISSN 0192-8651 REMARK 1 DOI 10.1002/(SICI)1096-987X(199802)19:3<319::AID-JCC6>3 REMARK 1 DOI 2 .3.CO;2-3
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FANTOM 4.0 REMARK 3 AUTHORS : TH.SCHAUMANN, W.BRAUN, K.WUTHRICH, REMARK 3 R.FRACZKIEWICZ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE REFERENCE: J. MAGN. RESON. 136, REMARK 3 P76-85(1999)
REMARK 4 REMARK 4 1CXR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB009611.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.5 MM CRAMBIN(SER/ILE) 0.7 REMARK 210 ML OF 75% D6-ACETONE, 20%H2O, REMARK 210 5%D2O BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VXRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NOAH 1.0, DIAMOD 1.0 REMARK 210 METHOD USED : SELF-CORRECTING DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 24 -66.68 74.41 REMARK 500 1 TYR A 29 32.16 -89.98 REMARK 500 1 THR A 30 17.13 -140.00 REMARK 500 1 CYS A 32 -179.14 -64.87 REMARK 500 2 THR A 21 -85.70 -102.35 REMARK 500 2 SER A 22 -56.75 76.33 REMARK 500 2 THR A 28 -125.28 -90.09 REMARK 500 2 TYR A 29 40.15 -89.96 REMARK 500 2 ALA A 38 -94.32 -157.11 REMARK 500 3 THR A 21 34.07 -159.94 REMARK 500 3 SER A 22 -131.23 38.36 REMARK 500 3 GLU A 23 54.53 -90.05 REMARK 500 3 ALA A 24 -69.94 73.37 REMARK 500 3 PRO A 36 -80.23 -75.00 REMARK 500 3 ALA A 45 -65.82 75.59 REMARK 500 4 THR A 21 -76.60 -135.08 REMARK 500 4 SER A 22 60.37 35.77 REMARK 500 4 ALA A 38 -93.58 -156.93 REMARK 500 4 ASP A 43 -60.24 -110.00 REMARK 500 5 THR A 21 136.73 64.70 REMARK 500 5 SER A 22 -82.36 -63.96 REMARK 500 5 GLU A 23 -75.90 -90.00 REMARK 500 5 ALA A 24 -70.45 -171.21 REMARK 500 5 TYR A 29 32.70 -90.04 REMARK 500 5 THR A 30 18.07 -140.01 REMARK 500 5 ALA A 38 60.98 34.66 REMARK 500 5 ALA A 45 -63.86 75.89 REMARK 500 6 ILE A 7 -14.56 83.49 REMARK 500 6 THR A 21 -77.99 -131.41 REMARK 500 6 TYR A 44 -51.46 -138.83 REMARK 500 6 ALA A 45 -64.99 75.42 REMARK 500 7 PHE A 13 40.21 -90.00 REMARK 500 7 THR A 21 99.58 61.19 REMARK 500 7 GLU A 23 -89.17 -90.03 REMARK 500 7 ALA A 24 -94.59 -173.94 REMARK 500 7 PRO A 36 -168.30 -75.00 REMARK 500 7 ALA A 38 71.39 30.66 REMARK 500 8 THR A 21 -78.09 -134.64 REMARK 500 8 ALA A 24 -157.56 -149.70 REMARK 500 9 SER A 22 -143.07 46.09 REMARK 500 9 GLU A 23 45.62 -89.94 REMARK 500 9 ALA A 24 -66.79 75.54 REMARK 500 9 TYR A 29 46.19 -90.01 REMARK 500 9 THR A 30 12.20 -140.01 REMARK 500 9 TYR A 44 -51.88 -125.12 REMARK 500 9 ALA A 45 84.36 54.42 REMARK 500 10 THR A 21 74.07 58.47 REMARK 500 10 SER A 22 -78.04 -72.18 REMARK 500 10 ALA A 24 -66.73 74.37 REMARK 500 10 ALA A 27 -79.40 -90.01 REMARK 500 10 ASP A 43 -72.95 -76.82 REMARK 500 10 TYR A 44 46.29 38.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 17 0.13 SIDE_CHAIN REMARK 500 6 ARG A 10 0.15 SIDE_CHAIN REMARK 500 8 ARG A 17 0.13 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CCM RELATED DB: PDB REMARK 900 1CCM CONTAINS TWO ISOFORMS: SER22/ILE25 AND PRO22/LEU
DBREF 1CXR A 1 46 UNP P01542 CRAM_CRAAB 1 46
SEQADV 1CXR SER A 22 UNP P01542 PRO 22 MUTATION
SEQRES 1 A 46 THR THR CYS CYS PRO SER ILE VAL ALA ARG SER ASN PHE SEQRES 2 A 46 ASN VAL CYS ARG LEU PRO GLY THR SER GLU ALA ILE CYS SEQRES 3 A 46 ALA THR TYR THR GLY CYS ILE ILE ILE PRO GLY ALA THR SEQRES 4 A 46 CYS PRO GLY ASP TYR ALA ASN
HELIX 1 1 ILE A 7 CYS A 16 5 10
SSBOND 1 CYS A 3 CYS A 40 1555 1555 1.99 SSBOND 2 CYS A 4 CYS A 32 1555 1555 1.94 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000