10 20 30 40 50 60 70 80 1CWX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 27-AUG-99 1CWX
TITLE SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL TITLE 2 CAPSID PROTEIN 2-45 [C-HCV(2-45)]
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATITIS C VIRUS CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. SOURCE 4 THIS SEQUENCE OCCURS NATURALLY IN HEPATITIS C VIRUS SOURCE 5 (GENOTYPE 1A ISOLATE H77)..
KEYWDS HELIX-LOOP-HELIX, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 4
AUTHOR L.LADAVIERE,G.DELEAGE,R.MONTSERRET,P.DALBON,M.JOLIVET, AUTHOR 2 F.PENIN
REVDAT 2 24-FEB-09 1CWX 1 VERSN REVDAT 1 30-AUG-99 1CWX 0
JRNL AUTH L.LADAVIERE,G.DELEAGE,R.MONTSERRET,P.DALBON, JRNL AUTH 2 M.JOLIVET,F.PENIN JRNL TITL STRUCTURAL ANALYSIS OF THE IMMUNODOMINANT JRNL TITL 2 ANTIGENIC REGION OF THE HEPATITIS C VIRUS CAPSID JRNL TITL 3 PROTEIN BY NMR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1CWX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB009594.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : 0.1M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 40% D2-TRIFLUOROETHANOL;0.01M REMARK 210 SODIUM PHOSPHATE;0.1M NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D ROESY, REMARK 210 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.1, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : MOST CONVERGENT STRUCTURES AT REMARK 210 THE LEVEL OF BOTH HELICES. REMARK 210 NOTE THAT 23 STRUCTURES OVER REMARK 210 50 HAD NO RESTRAINT VIOLATION REMARK 210 > 0.5 ANGSTROM. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 89.37 -179.90 REMARK 500 1 LYS A 5 -51.52 164.29 REMARK 500 1 LYS A 9 -49.94 179.45 REMARK 500 1 THR A 10 -80.39 -85.71 REMARK 500 1 ARG A 12 -174.80 63.23 REMARK 500 1 ASN A 13 169.28 -45.02 REMARK 500 1 THR A 14 -38.29 -173.66 REMARK 500 1 ARG A 17 -45.57 120.76 REMARK 500 1 GLN A 19 41.26 -86.71 REMARK 500 1 ASP A 20 -43.16 -155.39 REMARK 500 1 GLN A 28 -10.28 -48.14 REMARK 500 1 ILE A 29 -6.72 80.37 REMARK 500 1 ARG A 39 94.09 -52.77 REMARK 500 2 THR A 2 -89.01 59.98 REMARK 500 2 ASN A 3 84.54 -164.66 REMARK 500 2 LYS A 9 149.65 -173.71 REMARK 500 2 LYS A 11 -53.35 -173.05 REMARK 500 2 ARG A 12 129.09 61.86 REMARK 500 2 THR A 14 -43.55 -170.67 REMARK 500 2 ASN A 15 116.25 -164.65 REMARK 500 2 ARG A 17 -57.26 161.42 REMARK 500 2 GLN A 19 43.99 -91.27 REMARK 500 2 ASP A 20 -39.98 -151.52 REMARK 500 2 PRO A 24 -72.97 -77.21 REMARK 500 2 ILE A 29 -12.09 83.26 REMARK 500 2 ARG A 38 39.25 -87.58 REMARK 500 3 ASN A 3 96.18 -176.65 REMARK 500 3 LYS A 9 -90.03 -150.93 REMARK 500 3 THR A 10 -73.36 79.96 REMARK 500 3 LYS A 11 127.95 62.59 REMARK 500 3 ARG A 12 -179.69 50.47 REMARK 500 3 ASN A 13 -66.37 -149.98 REMARK 500 3 ARG A 17 -57.96 147.93 REMARK 500 3 GLN A 19 40.60 -89.49 REMARK 500 3 ASP A 20 -43.06 -153.89 REMARK 500 3 ARG A 39 96.19 -50.06 REMARK 500 4 THR A 2 -74.63 -157.98 REMARK 500 4 LYS A 5 79.68 61.44 REMARK 500 4 GLN A 7 -90.04 -75.83 REMARK 500 4 ARG A 8 99.75 -174.09 REMARK 500 4 LYS A 9 -88.10 -163.13 REMARK 500 4 THR A 10 172.92 174.71 REMARK 500 4 LYS A 11 177.77 -58.20 REMARK 500 4 ASN A 15 92.84 -47.39 REMARK 500 4 ARG A 17 -47.50 124.49 REMARK 500 4 GLN A 19 44.80 -89.37 REMARK 500 4 ASP A 20 -41.81 -157.26 REMARK 500 4 GLN A 28 -33.67 -135.95 REMARK 500 4 ILE A 29 -12.95 85.34 REMARK 500 4 PRO A 37 -100.62 -77.22 REMARK 500 4 ARG A 38 -106.04 -94.72 REMARK 500 4 LEU A 43 61.15 -118.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.32 SIDE_CHAIN REMARK 500 1 ARG A 12 0.31 SIDE_CHAIN REMARK 500 1 ARG A 16 0.29 SIDE_CHAIN REMARK 500 1 ARG A 17 0.24 SIDE_CHAIN REMARK 500 1 ARG A 38 0.30 SIDE_CHAIN REMARK 500 1 ARG A 39 0.24 SIDE_CHAIN REMARK 500 1 ARG A 42 0.28 SIDE_CHAIN REMARK 500 2 ARG A 8 0.31 SIDE_CHAIN REMARK 500 2 ARG A 12 0.27 SIDE_CHAIN REMARK 500 2 ARG A 16 0.08 SIDE_CHAIN REMARK 500 2 ARG A 17 0.26 SIDE_CHAIN REMARK 500 2 ARG A 38 0.30 SIDE_CHAIN REMARK 500 2 ARG A 39 0.20 SIDE_CHAIN REMARK 500 2 ARG A 42 0.30 SIDE_CHAIN REMARK 500 3 ARG A 8 0.25 SIDE_CHAIN REMARK 500 3 ARG A 12 0.23 SIDE_CHAIN REMARK 500 3 ARG A 16 0.31 SIDE_CHAIN REMARK 500 3 ARG A 17 0.19 SIDE_CHAIN REMARK 500 3 ARG A 38 0.27 SIDE_CHAIN REMARK 500 3 ARG A 39 0.20 SIDE_CHAIN REMARK 500 3 ARG A 42 0.32 SIDE_CHAIN REMARK 500 4 ARG A 8 0.32 SIDE_CHAIN REMARK 500 4 ARG A 12 0.31 SIDE_CHAIN REMARK 500 4 ARG A 17 0.23 SIDE_CHAIN REMARK 500 4 ARG A 38 0.32 SIDE_CHAIN REMARK 500 4 ARG A 39 0.29 SIDE_CHAIN REMARK 500 4 ARG A 42 0.25 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1CWX A 1 44 UNP P27958 POLG_HCVH 2 45
SEQRES 1 A 44 SER THR ASN PRO LYS PRO GLN ARG LYS THR LYS ARG ASN SEQRES 2 A 44 THR ASN ARG ARG PRO GLN ASP VAL LYS PHE PRO GLY GLY SEQRES 3 A 44 GLY GLN ILE VAL GLY GLY VAL TYR LEU LEU PRO ARG ARG SEQRES 4 A 44 GLY PRO ARG LEU GLY
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000