10 20 30 40 50 60 70 80 1CW5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 25-AUG-99 1CW5
TITLE SOLUTION STRUCTURE OF CARNOBACTERIOCIN B2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IIA BACTERIOCIN CARNOBACTERIOCIN B2; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; SOURCE 3 ORGANISM_TAXID: 2751
KEYWDS ANTIMICROBIAL PEPTIDE, HELIX, BACTERIOCIN, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.WANG,M.E.HENZ,N.L.F.GALLAGHER,S.CHAI,L.Z.YAN,A.C.GIBBS, AUTHOR 2 M.E.STILES,D.S.WISHART,J.C.VEDERAS
REVDAT 4 24-FEB-09 1CW5 1 VERSN REVDAT 3 01-APR-03 1CW5 1 JRNL REVDAT 2 02-APR-00 1CW5 1 JRNL REMARK REVDAT 1 07-SEP-99 1CW5 0
JRNL AUTH Y.WANG,M.E.HENZ,N.L.GALLAGHER,S.CHAI,A.C.GIBBS, JRNL AUTH 2 L.Z.YAN,M.E.STILES,D.S.WISHART,J.C.VEDERAS JRNL TITL SOLUTION STRUCTURE OF CARNOBACTERIOCIN B2 AND JRNL TITL 2 IMPLICATIONS FOR STRUCTURE-ACTIVITY RELATIONSHIPS JRNL TITL 3 AMONG TYPE IIA BACTERIOCINS FROM LACTIC ACID JRNL TITL 4 BACTERIA. JRNL REF BIOCHEMISTRY V. 38 15438 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10569926 JRNL DOI 10.1021/BI991351X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 319 PROTON DISTANCE RESTRAINTS, 88 DIHEDRAL ANGLE REMARK 3 RESTRAINTS, 8 3JHNHA COUPLING CONSTANT RESTRAINTS, AND 163 REMARK 3 PROTON CHEMICAL SHIFT RESTRAINTS.
REMARK 4 REMARK 4 1CW5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB009582.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 2.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5.0 MG CARNOBACTERIOCIN B2 IS REMARK 210 DISOLVED IN 700 UL OF TFE-D3/ REMARK 210 H2O, 90%:10% V/V, PH 2.8. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.85, VNMR 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON- BOND REMARK 210 ENERGY,STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. THE STRUCTURE WAS DETERMINED USING REMARK 210 TRIPLE-RESONANCE NMR SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 29.64 -162.63 REMARK 500 1 LYS A 11 163.45 45.21 REMARK 500 1 THR A 12 58.82 -90.05 REMARK 500 1 LYS A 13 -90.38 -158.25 REMARK 500 1 CYS A 14 93.71 75.27 REMARK 500 1 SER A 15 -47.87 -162.20 REMARK 500 1 VAL A 16 117.09 -164.69 REMARK 500 1 ALA A 41 82.70 179.04 REMARK 500 1 ILE A 44 69.24 -178.21 REMARK 500 1 ARG A 46 54.97 -100.42 REMARK 500 2 TYR A 3 86.63 68.90 REMARK 500 2 ASN A 5 -64.82 -162.74 REMARK 500 2 VAL A 7 -64.82 62.98 REMARK 500 2 SER A 8 92.10 48.48 REMARK 500 2 CYS A 9 89.05 54.55 REMARK 500 2 THR A 12 -84.16 -88.95 REMARK 500 2 LYS A 13 38.63 -158.37 REMARK 500 2 VAL A 16 99.90 -163.65 REMARK 500 2 ALA A 21 -70.04 -56.94 REMARK 500 2 ALA A 41 74.89 65.91 REMARK 500 2 ARG A 46 118.76 66.13 REMARK 500 3 ASN A 2 -45.12 -161.10 REMARK 500 3 SER A 10 92.28 -163.59 REMARK 500 3 LYS A 13 -69.38 68.60 REMARK 500 3 SER A 15 176.39 62.96 REMARK 500 3 VAL A 16 111.13 -163.88 REMARK 500 3 TRP A 18 27.32 49.13 REMARK 500 3 ALA A 41 83.63 178.95 REMARK 500 3 SER A 43 -75.07 -67.22 REMARK 500 4 ASN A 2 28.09 -160.44 REMARK 500 4 ASN A 5 39.34 -162.33 REMARK 500 4 CYS A 9 131.37 -176.74 REMARK 500 4 LYS A 11 20.42 48.08 REMARK 500 4 LYS A 13 -6.65 80.25 REMARK 500 4 CYS A 14 -70.35 69.10 REMARK 500 4 SER A 15 -167.51 -57.34 REMARK 500 4 VAL A 16 -70.61 81.15 REMARK 500 4 ASN A 17 -33.31 173.36 REMARK 500 4 TRP A 18 -33.99 -39.18 REMARK 500 4 ALA A 41 -9.55 83.37 REMARK 500 4 SER A 43 -65.31 -104.03 REMARK 500 4 ILE A 44 33.56 -155.62 REMARK 500 4 ARG A 46 39.36 -173.55 REMARK 500 4 ARG A 47 85.67 42.24 REMARK 500 5 ASN A 2 -69.04 71.11 REMARK 500 5 ASN A 5 -42.42 -162.47 REMARK 500 5 SER A 8 95.34 60.81 REMARK 500 5 LYS A 13 -68.64 -158.50 REMARK 500 5 CYS A 14 66.25 74.31 REMARK 500 5 ASN A 17 -63.36 63.36 REMARK 500 5 SER A 43 77.05 -173.06 REMARK 500 5 ILE A 44 59.87 -154.58 REMARK 500 5 ARG A 46 -173.00 58.76 REMARK 500 5 ARG A 47 101.17 44.90 REMARK 500 6 ASN A 2 69.50 -160.78 REMARK 500 6 ASN A 5 71.60 79.61 REMARK 500 6 SER A 8 68.67 -178.87 REMARK 500 6 LYS A 11 129.24 77.63 REMARK 500 6 THR A 12 176.83 60.00 REMARK 500 6 VAL A 16 90.53 81.01 REMARK 500 6 ILE A 44 79.87 72.64 REMARK 500 6 ARG A 46 98.75 -160.34 REMARK 500 7 TYR A 3 38.41 -157.30 REMARK 500 7 ASN A 5 -49.19 -161.55 REMARK 500 7 SER A 10 -68.84 -93.17 REMARK 500 7 THR A 12 -65.11 64.60 REMARK 500 7 CYS A 14 42.41 -166.56 REMARK 500 7 SER A 43 66.43 62.83 REMARK 500 7 ILE A 44 43.62 -106.12 REMARK 500 7 ARG A 47 55.02 -140.01 REMARK 500 8 SER A 8 101.02 64.40 REMARK 500 8 SER A 15 -149.53 -75.26 REMARK 500 8 VAL A 16 108.98 -164.24 REMARK 500 8 ILE A 44 60.27 -166.83 REMARK 500 8 ARG A 46 99.34 -179.81 REMARK 500 9 LYS A 11 -1.72 81.53 REMARK 500 9 SER A 15 -177.56 61.50 REMARK 500 9 VAL A 16 113.61 -162.32 REMARK 500 9 ALA A 41 -59.35 -145.35 REMARK 500 9 ILE A 44 63.77 -152.18 REMARK 500 10 CYS A 9 82.59 -166.59 REMARK 500 10 SER A 10 -163.62 -72.14 REMARK 500 10 CYS A 14 -46.43 167.28 REMARK 500 10 VAL A 16 86.98 -164.50 REMARK 500 10 ALA A 21 -71.55 -60.29 REMARK 500 10 ALA A 41 -71.42 -178.88 REMARK 500 10 SER A 43 71.19 64.83 REMARK 500 10 ARG A 46 95.89 62.22 REMARK 500 11 ASN A 5 53.69 -161.23 REMARK 500 11 VAL A 7 37.40 -150.33 REMARK 500 11 SER A 8 40.43 -176.93 REMARK 500 11 SER A 10 -73.36 -74.67 REMARK 500 11 ALA A 41 -72.08 -157.29 REMARK 500 12 ASN A 2 26.65 -160.87 REMARK 500 12 ASN A 5 58.30 -162.59 REMARK 500 12 VAL A 7 88.30 51.12 REMARK 500 12 SER A 10 -39.20 -172.73 REMARK 500 12 SER A 15 -174.22 -173.61 REMARK 500 12 VAL A 16 -43.29 -164.99 REMARK 500 12 ASN A 17 91.93 -64.36 REMARK 500 12 SER A 43 74.19 -177.36 REMARK 500 12 ARG A 47 94.26 54.89 REMARK 500 13 ASN A 2 -58.30 78.44 REMARK 500 13 TYR A 3 -75.00 69.65 REMARK 500 13 ASN A 5 32.97 -162.76 REMARK 500 13 SER A 8 -146.88 -143.65 REMARK 500 13 THR A 12 69.02 -150.78 REMARK 500 13 LYS A 13 170.15 74.61 REMARK 500 13 ASN A 17 -162.77 -63.83 REMARK 500 13 SER A 43 62.86 178.26 REMARK 500 13 ARG A 46 69.05 61.60 REMARK 500 14 ASN A 2 -60.06 76.16 REMARK 500 14 TYR A 3 109.34 64.59 REMARK 500 14 ASN A 5 -54.79 -163.26 REMARK 500 14 SER A 8 109.68 51.30 REMARK 500 14 LYS A 13 39.41 -159.13 REMARK 500 14 VAL A 16 33.73 -164.27 REMARK 500 14 ASN A 17 -71.74 67.37 REMARK 500 14 ILE A 44 -40.79 -168.52 REMARK 500 14 ARG A 46 -69.17 -121.07 REMARK 500 15 ASN A 5 -67.97 -162.67 REMARK 500 15 SER A 8 126.76 61.31 REMARK 500 15 CYS A 9 -88.19 -147.52 REMARK 500 15 SER A 10 67.20 37.24 REMARK 500 15 LYS A 11 -21.11 -162.06 REMARK 500 15 THR A 12 -21.07 -150.86 REMARK 500 15 CYS A 14 137.06 74.22 REMARK 500 15 ALA A 21 -70.02 -59.02 REMARK 500 15 SER A 43 -51.52 -171.29 REMARK 500 15 ILE A 44 -79.99 -150.56 REMARK 500 16 ASN A 2 -160.13 -162.13 REMARK 500 16 TYR A 3 163.66 61.25 REMARK 500 16 ASN A 5 60.51 73.38 REMARK 500 16 SER A 8 -148.93 -81.22 REMARK 500 16 LYS A 11 -77.74 -161.45 REMARK 500 16 CYS A 14 -74.50 -161.41 REMARK 500 16 VAL A 16 131.82 77.45 REMARK 500 16 ARG A 47 89.63 56.07 REMARK 500 17 ASN A 2 21.42 -160.87 REMARK 500 17 TYR A 3 -153.28 -80.69 REMARK 500 17 ASN A 5 86.05 80.83 REMARK 500 17 VAL A 7 118.30 60.58 REMARK 500 17 CYS A 9 -54.92 66.92 REMARK 500 17 LYS A 11 -59.67 78.26 REMARK 500 17 LYS A 13 -55.09 -159.17 REMARK 500 17 VAL A 16 100.42 -163.59 REMARK 500 17 ALA A 21 -71.48 -63.33 REMARK 500 17 ARG A 47 105.13 35.36 REMARK 500 18 ASN A 2 91.80 -161.36 REMARK 500 18 SER A 10 -84.24 54.23 REMARK 500 18 LYS A 11 -24.11 -161.66 REMARK 500 18 LYS A 13 -173.78 47.51 REMARK 500 18 CYS A 14 -158.48 -133.97 REMARK 500 19 ASN A 2 -46.43 -163.10 REMARK 500 19 ASN A 5 63.19 74.89 REMARK 500 19 VAL A 7 -42.76 -149.68 REMARK 500 19 SER A 8 130.51 178.20 REMARK 500 19 THR A 12 16.41 58.36 REMARK 500 19 LYS A 13 -39.35 -160.13 REMARK 500 19 SER A 15 137.91 -173.68 REMARK 500 19 VAL A 16 116.95 -164.80 REMARK 500 19 ALA A 41 -77.37 -141.80 REMARK 500 19 SER A 43 38.75 -155.47 REMARK 500 20 ASN A 2 -5.01 -161.76 REMARK 500 20 ASN A 5 63.05 -162.28 REMARK 500 20 CYS A 9 101.03 -171.77 REMARK 500 20 SER A 10 -102.23 -78.52 REMARK 500 20 LYS A 11 37.71 -162.70 REMARK 500 20 THR A 12 -77.66 -151.09 REMARK 500 20 CYS A 14 170.71 57.89 REMARK 500 20 TRP A 18 36.49 -89.17 REMARK 500 20 ILE A 44 -69.38 -133.78 REMARK 500 20 ARG A 46 -65.01 68.83 REMARK 500 20 ARG A 47 73.22 57.36 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1CW5 A 1 48 UNP P38580 CBB2_CARPI 19 66
SEQRES 1 A 48 VAL ASN TYR GLY ASN GLY VAL SER CYS SER LYS THR LYS SEQRES 2 A 48 CYS SER VAL ASN TRP GLY GLN ALA PHE GLN GLU ARG TYR SEQRES 3 A 48 THR ALA GLY ILE ASN SER PHE VAL SER GLY VAL ALA SER SEQRES 4 A 48 GLY ALA GLY SER ILE GLY ARG ARG PRO
HELIX 1 1 ASN A 17 GLY A 42 1 26
SSBOND 1 CYS A 9 CYS A 14 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000