10 20 30 40 50 60 70 80 1CK2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBOSOME 26-APR-99 1CK2
TITLE YEAST (SACCHAROMYCES CEREVISIAE) RIBOSOMAL PROTEIN L30
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L30; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RL30_YEAST; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THIS ENTRY, 1CK2, IS THE REPLACEMENT OF COMPND 7 1CN6 CITED IN THE PRIMARY REFERENCE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 ORGANELLE: RIBOSOME, 60S SUBUNIT; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM; SOURCE 7 GENE: RPL30; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMALC-L30; SOURCE 13 OTHER_DETAILS: RECOMBINANT EXPRESSION AS A C-TERMINAL SOURCE 14 MALTOSE-BINDING PROTEIN FUSION IN ESCHERICHIA COLI STRAIN SOURCE 15 JM109 HOSTING PLASMID PMALC-30
KEYWDS RIBOSOMAL PROTEIN, AUTO-REGULATION OF PRE-MRNA SPLICING AND KEYWDS 2 MRNA TRANSLATION, RIBOSOME
EXPDTA SOLUTION NMR
AUTHOR H.MAO,J.R.WILLAMSON
REVDAT 4 24-FEB-09 1CK2 1 VERSN REVDAT 3 25-JUL-06 1CK2 1 COMPND DBREF REMARK REVDAT 2 01-APR-03 1CK2 1 JRNL REVDAT 1 14-OCT-99 1CK2 0
JRNL AUTH H.MAO,J.R.WILLIAMSON JRNL TITL LOCAL FOLDING COUPLED TO RNA BINDING IN THE YEAST JRNL TITL 2 RIBOSOMAL PROTEIN L30 JRNL REF J.MOL.BIOL. V. 292 345 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10493880 JRNL DOI 10.1006/JMBI.1999.3044
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.D.DABEVA,J.R.WARNER REMARK 1 TITL THE YEAST RIBOSOMAL PROTEIN L32 AND ITS GENE REMARK 1 REF J.BIOL.CHEM. V. 262 16055 1987 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE INTRARESIDUE NOES 720 REMARK 3 INTERRESIDUE NOES 698 SEQUENTIAL (|I-J|=1) 291 SHORT-RANGE (|I REMARK 3 -J|<=4) 149, LONG-RANGE (|I-J|>4) 258, HYDROGEN BONDS 62. REMARK 3 TOTAL 1418, TORSION BACKBONE PHI 80, SIDECHAIN KAI1 59, TOTAL REMARK 3 139
REMARK 4 REMARK 4 1CK2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-99. REMARK 100 THE RCSB ID CODE IS RCSB000941.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300 MM REMARK 210 PRESSURE : 1 ATOM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY, HNCA, REMARK 210 HNCO, HN(CO)CA, CBCA(CO)NH, REMARK 210 HCCHTOCSY, NOESYHSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VARIAN INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMIC REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE. THIS STRUCTURE WAS DETERMINED USING REMARK 210 TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED L30 REMARK 210 PROTEIN.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 2 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 -12.04 -149.92 REMARK 500 ALA A 45 57.91 -114.53 REMARK 500 ASN A 47 75.40 -61.89 REMARK 500 ASN A 74 -88.71 -131.32 REMARK 500 ASN A 75 13.94 -170.39 REMARK 500 VAL A 81 -70.55 -80.58 REMARK 500 LYS A 83 -30.43 58.07 REMARK 500 LEU A 84 -60.86 -91.20 REMARK 500 ASP A 97 -85.71 -145.56 REMARK 500 ASP A 99 12.09 -52.06 REMARK 500 LEU A 104 38.72 -77.15 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1CK2 A 2 105 UNP P14120 RL30_YEAST 1 104
SEQRES 1 A 104 ALA PRO VAL LYS SER GLN GLU SER ILE ASN GLN LYS LEU SEQRES 2 A 104 ALA LEU VAL ILE LYS SER GLY LYS TYR THR LEU GLY TYR SEQRES 3 A 104 LYS SER THR VAL LYS SER LEU ARG GLN GLY LYS SER LYS SEQRES 4 A 104 LEU ILE ILE ILE ALA ALA ASN THR PRO VAL LEU ARG LYS SEQRES 5 A 104 SER GLU LEU GLU TYR TYR ALA MET LEU SER LYS THR LYS SEQRES 6 A 104 VAL TYR TYR PHE GLN GLY GLY ASN ASN GLU LEU GLY THR SEQRES 7 A 104 ALA VAL GLY LYS LEU PHE ARG VAL GLY VAL VAL SER ILE SEQRES 8 A 104 LEU GLU ALA GLY ASP SER ASP ILE LEU THR THR LEU ALA
HELIX 1 1 SER A 9 ILE A 18 1 10 HELIX 2 2 TYR A 27 ARG A 35 1 9 HELIX 3 3 VAL A 50 LEU A 62 1 13 HELIX 4 4 GLY A 78 VAL A 81 1 4 HELIX 5 5 ILE A 100 THR A 103 1 4
SHEET 1 A 4 LYS A 66 TYR A 69 0 SHEET 2 A 4 LEU A 41 ALA A 45 1 N ILE A 42 O LYS A 66 SHEET 3 A 4 GLY A 88 GLU A 94 -1 N ILE A 92 O LEU A 41 SHEET 4 A 4 LYS A 22 LEU A 25 -1 N THR A 24 O SER A 91
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000