10 20 30 40 50 60 70 80 1CFN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER POLYSPECIFICITY 19-MAR-99 1CFN
TITLE ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN TITLE 2 EPITOPE-RELATED PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN) COMPND 3 ); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FAB; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (IGG2A-KAPPA ANTIBODY CB41 (HEAVY CHAIN) COMPND 8 ); COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: FAB; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (BOUND PEPTIDE); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL_LINE: CB 4/1/1/F6 B-CELL HYBRIDOMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 CELL_LINE: CB 4/1/1/F6 B-CELL HYBRIDOMA; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES
KEYWDS POLYSPECIFICITY, CROSS REACTIVITY, FAB-FRAGMENT, PEPTIDE, KEYWDS 2 HIV-1
EXPDTA X-RAY DIFFRACTION
AUTHOR T.KEITEL,A.KRAMER,H.WESSNER,C.SCHOLZ,J.SCHNEIDER-MERGENER, AUTHOR 2 W.HOEHNE
REVDAT 4 24-FEB-09 1CFN 1 VERSN REVDAT 3 01-APR-03 1CFN 1 JRNL REVDAT 2 28-APR-99 1CFN 1 TITLE REVDAT 1 30-MAR-99 1CFN 0
JRNL AUTH T.KEITEL,A.KRAMER,H.WESSNER,C.SCHOLZ, JRNL AUTH 2 J.SCHNEIDER-MERGENER,W.HOHNE JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF ANTI-P24 (HIV-1) JRNL TITL 2 MONOCLONAL ANTIBODY CROSS-REACTIVITY AND JRNL TITL 3 POLYSPECIFICITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 91 811 1997 JRNL REFN ISSN 0092-8674 JRNL PMID 9413990 JRNL DOI 10.1016/S0092-8674(00)80469-9
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCP4 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 26473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2770 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2039 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 26473 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.037 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.037 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.050 ; 0.024 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.150 ; 0.620 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.196 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.250 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.178 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 83.400; 15.000 REMARK 3 PLANAR (DEGREES) : 4.700 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 25.400; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 16.500; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.589 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.665 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.790 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1CFN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-99. REMARK 100 THE RCSB ID CODE IS RCSB000687.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 288.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : GE(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 91.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2HFL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2 SO4, 0.1 M 3-(N- REMARK 280 MORPHOLINO)-PROPANESULFONIC AC, PH 7.5
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.59667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 197.19333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.89500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 246.49167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.29833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.59667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 197.19333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 246.49167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.89500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.29833 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR C 3 N GLN C 5 1.94 REMARK 500 NH1 ARG A 61 OD2 ASP A 82 2.15 REMARK 500 CB GLU A 79 OE1 GLU A 81 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 79 C TYR A 80 N 0.155 REMARK 500 SER A 171 N SER A 171 CA 0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 11 CA - CB - CG ANGL. DEV. = 22.4 DEGREES REMARK 500 THR A 34 CA - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 105 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 SER A 168 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 SER A 168 C - N - CA ANGL. DEV. = 20.5 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 SER A 171 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 10 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 31 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 MET B 81 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU B 147 OE1 - CD - OE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU B 151 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU B 158 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -167.53 -75.51 REMARK 500 ALA A 51 -46.35 66.57 REMARK 500 ASN A 52 21.35 -142.32 REMARK 500 PRO A 59 153.85 -48.55 REMARK 500 ASN A 138 60.02 72.40 REMARK 500 ASP A 151 47.29 34.14 REMARK 500 SER A 171 1.05 92.06 REMARK 500 THR A 200 0.96 -61.74 REMARK 500 THR A 202 -66.72 -97.82 REMARK 500 GLU A 213 80.06 77.41 REMARK 500 ASP B 2 -87.27 -59.16 REMARK 500 VAL B 42 -75.22 -56.92 REMARK 500 SER B 56 -2.31 81.35 REMARK 500 ALA B 92 -176.53 -170.33 REMARK 500 LYS B 99 -37.33 98.85 REMARK 500 ALA B 113 142.06 -39.41 REMARK 500 THR B 130 148.80 -35.18 REMARK 500 THR B 131 56.95 -105.18 REMARK 500 PHE B 145 128.85 -173.62 REMARK 500 SER B 155 16.93 58.33 REMARK 500 THR B 186 -70.32 -25.69 REMARK 500 PRO C 4 46.28 -50.33 REMARK 500 LEU C 7 68.69 60.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 167 SER A 168 -135.22 REMARK 500 ASP A 170 SER A 171 142.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 8 -11.23 REMARK 500 TYR A 12 13.65 REMARK 500 LEU A 125 -11.68 REMARK 500 ARG A 188 14.31 REMARK 500 ALA B 24 11.22 REMARK 500 GLU B 89 10.53 REMARK 500 THR B 164 12.36 REMARK 500 LYS B 204 10.16 REMARK 500 REMARK 500 REMARK: NULL
SEQRES 1 A 214 ASP ILE LYS MET THR GLN SER PRO SER SER MET TYR THR SEQRES 2 A 214 SER LEU GLY GLU ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 A 214 GLN ASP ILE ASN SER PHE LEU THR TRP PHE LEU GLN LYS SEQRES 4 A 214 PRO GLY LYS SER PRO LYS THR LEU ILE TYR ARG ALA ASN SEQRES 5 A 214 ARG LEU MET ILE GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY GLN THR TYR SER LEU THR ILE SER SER LEU SEQRES 7 A 214 GLU TYR GLU ASP MET GLY ILE TYR TYR CYS LEU GLN TYR SEQRES 8 A 214 ASP ASP PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 214 ASP LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS GLU SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASP SER TRP THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU CYS SEQRES 1 B 213 GLN ASP GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 B 213 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA LEU GLY SEQRES 3 B 213 TYR ILE PHE THR ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 B 213 THR PRO VAL HIS GLY LEU GLU TRP ILE GLY GLY ILE HIS SEQRES 5 B 213 PRO GLY SER SER GLY THR ALA TYR ASN GLN LYS PHE LYS SEQRES 6 B 213 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER THR THR SEQRES 7 B 213 ALA PHE MET GLU LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 213 ALA VAL TYR TYR CYS THR ARG LYS ASP TYR TRP GLY GLN SEQRES 9 B 213 GLY THR LEU VAL THR VAL SER ALA ALA LYS THR THR ALA SEQRES 10 B 213 PRO SER VAL TYR PRO LEU VAL PRO VAL CYS GLY GLY THR SEQRES 11 B 213 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 B 213 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 13 B 213 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA LEU LEU SEQRES 14 B 213 GLN SER GLY LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 15 B 213 THR SER ASN THR TRP PRO SER GLN THR ILE THR CYS ASN SEQRES 16 B 213 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 17 B 213 ILE GLU PRO ARG VAL SEQRES 1 C 10 GLY ALA THR PRO GLN ASP LEU ASN THR NLE
MODRES 1CFN NLE C 10 LEU NORLEUCINE
HET NLE C 10 8
HETNAM NLE NORLEUCINE
FORMUL 3 NLE C6 H13 N O2 FORMUL 4 HOH *25(H2 O)
HELIX 1 1 TYR A 80 ASP A 82 5 3 HELIX 2 2 SER A 122 SER A 127 1 6 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 PHE B 29 ASP B 31 5 3 HELIX 5 5 LYS B 74 SER B 76 5 3 HELIX 6 6 SER B 88 ASP B 90 5 3 HELIX 7 7 ASN B 154 GLY B 156 5 3 HELIX 8 8 THR B 186 SER B 189 1 4 HELIX 9 9 PRO B 199 SER B 201 5 3
SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 N LYS A 24 O THR A 5 SHEET 3 A 4 THR A 70 ILE A 75 -1 N ILE A 75 O VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 67 O THR A 70 SHEET 1 B 2 SER A 10 THR A 13 0 SHEET 2 B 2 LYS A 103 LEU A 106 1 N LYS A 103 O MET A 11 SHEET 1 C 3 ILE A 85 GLN A 90 0 SHEET 2 C 3 LEU A 33 GLN A 38 -1 N GLN A 38 O ILE A 85 SHEET 3 C 3 LYS A 45 ILE A 48 -1 N ILE A 48 O TRP A 35 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 ASN A 137 -1 N ASN A 137 O THR A 114 SHEET 3 D 4 MET A 175 THR A 182 -1 N LEU A 181 O ALA A 130 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 E 3 ASN A 145 ILE A 150 0 SHEET 2 E 3 SER A 191 THR A 197 -1 N THR A 197 O ASN A 145 SHEET 3 E 3 ILE A 205 ASN A 210 -1 N PHE A 209 O TYR A 192 SHEET 1 F 4 GLN B 3 GLN B 6 0 SHEET 2 F 4 VAL B 18 LEU B 25 -1 N LEU B 25 O GLN B 3 SHEET 3 F 4 THR B 78 LEU B 83 -1 N LEU B 83 O VAL B 18 SHEET 4 F 4 ALA B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 G 6 GLU B 10 VAL B 12 0 SHEET 2 G 6 THR B 106 VAL B 110 1 N THR B 109 O GLU B 10 SHEET 3 G 6 ALA B 92 THR B 97 -1 N TYR B 94 O THR B 106 SHEET 4 G 6 GLU B 33 THR B 40 -1 N GLN B 39 O VAL B 93 SHEET 5 G 6 GLY B 44 HIS B 52 -1 N ILE B 51 O ILE B 34 SHEET 6 G 6 THR B 58 TYR B 60 -1 N ALA B 59 O GLY B 50 SHEET 1 H 4 SER B 119 LEU B 123 0 SHEET 2 H 4 SER B 134 TYR B 144 -1 N LYS B 142 O SER B 119 SHEET 3 H 4 TYR B 174 THR B 183 -1 N VAL B 182 O VAL B 135 SHEET 4 H 4 VAL B 162 PHE B 165 -1 N PHE B 165 O SER B 177 SHEET 1 I 3 THR B 150 TRP B 153 0 SHEET 2 I 3 THR B 193 HIS B 198 -1 N ALA B 197 O THR B 150 SHEET 3 I 3 THR B 203 LYS B 208 -1 N LYS B 207 O CYS B 194 SHEET 1 J 2 LEU B 168 GLN B 170 0 SHEET 2 J 2 LEU B 173 THR B 175 -1 N THR B 175 O LEU B 168
SSBOND 1 CYS A 23 CYS A 88 1555 1555 1.99 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.02 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 4 CYS B 139 CYS B 194 1555 1555 2.00
LINK C THR C 9 N NLE C 10 1555 1555 1.32
CISPEP 1 SER A 7 PRO A 8 0 -1.62 CISPEP 2 PHE A 94 PRO A 95 0 -4.78 CISPEP 3 TYR A 140 PRO A 141 0 1.27 CISPEP 4 PHE B 145 PRO B 146 0 -1.59 CISPEP 5 GLU B 147 PRO B 148 0 10.63 CISPEP 6 TRP B 187 PRO B 188 0 8.03
CRYST1 105.440 105.440 295.790 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009484 0.005475 0.000000 0.00000
SCALE2 0.000000 0.010951 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003381 0.00000