10 20 30 40 50 60 70 80 1CDG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE(GLUCANOTRANSFERASE) 02-AUG-93 1CDG
TITLE NUCLEOTIDE SEQUENCE AND X-RAY STRUCTURE OF CYCLODEXTRIN TITLE 2 GLYCOSYLTRANSFERASE FROM BACILLUS CIRCULANS STRAIN 251 IN TITLE 3 A MALTOSE-DEPENDENT CRYSTAL FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLODEXTRIN GLYCOSYL-TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.19; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 3 ORGANISM_TAXID: 1397
KEYWDS TRANSFERASE(GLUCANOTRANSFERASE)
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.LAWSON,R.VAN MONTFORT,B.V.STROKOPYTOV,K.H.KALK, AUTHOR 2 H.J.ROZEBOOM,B.W.DIJKSTRA
REVDAT 4 24-FEB-09 1CDG 1 VERSN REVDAT 3 01-APR-03 1CDG 1 JRNL REVDAT 2 08-MAR-95 1CDG 1 JRNL REMARK REVDAT 1 31-JAN-94 1CDG 0
JRNL AUTH C.L.LAWSON,R.VAN MONTFORT,B.STROKOPYTOV, JRNL AUTH 2 H.J.ROZEBOOM,K.H.KALK,G.E.DE VRIES,D.PENNINGA, JRNL AUTH 3 L.DIJKHUIZEN,B.W.DIJKSTRA JRNL TITL NUCLEOTIDE SEQUENCE AND X-RAY STRUCTURE OF JRNL TITL 2 CYCLODEXTRIN GLYCOSYLTRANSFERASE FROM BACILLUS JRNL TITL 3 CIRCULANS STRAIN 251 IN A MALTOSE-DEPENDENT JRNL TITL 4 CRYSTAL FORM. JRNL REF J.MOL.BIOL. V. 236 590 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8107143 JRNL DOI 10.1006/JMBI.1994.1168
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.L.LAWSON,J.BERGSMA,P.M.BRUINENBERG,G.DE VRIES, REMARK 1 AUTH 2 L.DIJKHUIZEN,B.W.DIJKSTRA REMARK 1 TITL MALTODEXTRIN-DEPENDENT CRYSTALLIZATION OF REMARK 1 TITL 2 CYCLOMALTODEXTRIN GLUCANOTRANSFERASE FROM BACILLUS REMARK 1 TITL 3 CIRCULANS REMARK 1 REF J.MOL.BIOL. V. 214 807 1990 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.016 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.460 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1CDG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.18150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.21450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.46750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.21450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.18150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.46750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 104 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 159 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 213 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 213 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 284 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 319 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 325 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 325 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 328 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 353 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 353 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 398 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 412 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 436 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 436 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 540 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 540 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 SER A 543 N - CA - CB ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP A 577 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 577 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 585 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 585 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 590 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 617 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 25 -72.45 -89.52 REMARK 500 SER A 90 65.15 63.48 REMARK 500 ALA A 96 34.11 -81.87 REMARK 500 TRP A 101 73.46 -115.71 REMARK 500 THR A 141 -90.98 -102.04 REMARK 500 GLN A 148 54.22 -146.24 REMARK 500 PRO A 149 -13.69 -46.46 REMARK 500 ALA A 152 -131.74 54.49 REMARK 500 ASN A 173 37.34 75.12 REMARK 500 PHE A 183 19.01 56.25 REMARK 500 TYR A 195 -127.79 63.44 REMARK 500 TYR A 249 -70.60 -111.77 REMARK 500 SER A 279 -169.38 -103.92 REMARK 500 ARG A 294 -64.71 -106.84 REMARK 500 ASN A 299 -165.01 -125.30 REMARK 500 SER A 427 43.28 -94.23 REMARK 500 ALA A 483 158.76 -47.32 REMARK 500 ASN A 567 -179.14 -67.98 REMARK 500 TRP A 616 -1.63 69.20 REMARK 500 ASN A 627 28.45 -155.52 REMARK 500 VAL A 629 -72.92 -75.51 REMARK 500 TYR A 638 135.64 -172.85 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 838 DISTANCE = 35.12 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 5.69 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 691 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 29 O REMARK 620 2 ASP A 27 OD1 81.8 REMARK 620 3 ASN A 33 OD1 95.7 90.3 REMARK 620 4 ASN A 32 OD1 61.8 142.9 99.8 REMARK 620 5 ASP A 53 OD2 77.1 80.6 169.1 84.1 REMARK 620 6 HOH A 720 O 131.3 146.4 81.7 70.7 109.3 REMARK 620 7 GLY A 51 O 153.2 74.4 96.7 138.3 86.8 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 692 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 199 OD1 REMARK 620 2 ASP A 199 OD2 53.6 REMARK 620 3 HOH A 716 O 76.1 78.8 REMARK 620 4 HOH A 724 O 78.4 94.8 152.2 REMARK 620 5 ILE A 190 O 123.2 80.4 130.2 74.0 REMARK 620 6 HIS A 233 O 144.1 154.9 118.4 77.8 74.5 REMARK 620 7 HOH A 729 O 135.4 88.0 74.5 132.7 60.0 80.1 REMARK 620 8 ASN A 139 OD1 78.8 128.0 69.8 94.6 150.7 76.8 120.2 REMARK 620 N 1 2 3 4 5 6 7
REMARK 650 REMARK 650 HELIX REMARK 650 RESIDUES 54 - 62 AND 65 - 68 OF THE HELIX RECORD BELOW REMARK 650 CONSTITUTE ONE HELIX.
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *AB8* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REMARK 700 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST REMARK 700 AND LAST STRANDS ARE IDENTICAL.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC RESIDUE SITE REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: 1ST CALCIUM ION BINDING SITE REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: 2ND CALCIUM ION BINDING SITE REMARK 800 SITE_IDENTIFIER: MB1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: 1ST MALTOSE BINDING SITE REMARK 800 SITE_IDENTIFIER: MB2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: 2ND MALTOSE BINDING SITE REMARK 800 SITE_IDENTIFIER: MB3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: 3RD MALTOSE BINDING SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAL A 688 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAL A 689 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAL A 690 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 691 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 692
DBREF 1CDG A 1 686 UNP P43379 CDGT2_BACCI 28 713
SEQRES 1 A 686 ALA PRO ASP THR SER VAL SER ASN LYS GLN ASN PHE SER SEQRES 2 A 686 THR ASP VAL ILE TYR GLN ILE PHE THR ASP ARG PHE SER SEQRES 3 A 686 ASP GLY ASN PRO ALA ASN ASN PRO THR GLY ALA ALA PHE SEQRES 4 A 686 ASP GLY THR CYS THR ASN LEU ARG LEU TYR CYS GLY GLY SEQRES 5 A 686 ASP TRP GLN GLY ILE ILE ASN LYS ILE ASN ASP GLY TYR SEQRES 6 A 686 LEU THR GLY MET GLY VAL THR ALA ILE TRP ILE SER GLN SEQRES 7 A 686 PRO VAL GLU ASN ILE TYR SER ILE ILE ASN TYR SER GLY SEQRES 8 A 686 VAL ASN ASN THR ALA TYR HIS GLY TYR TRP ALA ARG ASP SEQRES 9 A 686 PHE LYS LYS THR ASN PRO ALA TYR GLY THR ILE ALA ASP SEQRES 10 A 686 PHE GLN ASN LEU ILE ALA ALA ALA HIS ALA LYS ASN ILE SEQRES 11 A 686 LYS VAL ILE ILE ASP PHE ALA PRO ASN HIS THR SER PRO SEQRES 12 A 686 ALA SER SER ASP GLN PRO SER PHE ALA GLU ASN GLY ARG SEQRES 13 A 686 LEU TYR ASP ASN GLY THR LEU LEU GLY GLY TYR THR ASN SEQRES 14 A 686 ASP THR GLN ASN LEU PHE HIS HIS ASN GLY GLY THR ASP SEQRES 15 A 686 PHE SER THR THR GLU ASN GLY ILE TYR LYS ASN LEU TYR SEQRES 16 A 686 ASP LEU ALA ASP LEU ASN HIS ASN ASN SER THR VAL ASP SEQRES 17 A 686 VAL TYR LEU LYS ASP ALA ILE LYS MET TRP LEU ASP LEU SEQRES 18 A 686 GLY ILE ASP GLY ILE ARG MET ASP ALA VAL LYS HIS MET SEQRES 19 A 686 PRO PHE GLY TRP GLN LYS SER PHE MET ALA ALA VAL ASN SEQRES 20 A 686 ASN TYR LYS PRO VAL PHE THR PHE GLY GLU TRP PHE LEU SEQRES 21 A 686 GLY VAL ASN GLU VAL SER PRO GLU ASN HIS LYS PHE ALA SEQRES 22 A 686 ASN GLU SER GLY MET SER LEU LEU ASP PHE ARG PHE ALA SEQRES 23 A 686 GLN LYS VAL ARG GLN VAL PHE ARG ASP ASN THR ASP ASN SEQRES 24 A 686 MET TYR GLY LEU LYS ALA MET LEU GLU GLY SER ALA ALA SEQRES 25 A 686 ASP TYR ALA GLN VAL ASP ASP GLN VAL THR PHE ILE ASP SEQRES 26 A 686 ASN HIS ASP MET GLU ARG PHE HIS ALA SER ASN ALA ASN SEQRES 27 A 686 ARG ARG LYS LEU GLU GLN ALA LEU ALA PHE THR LEU THR SEQRES 28 A 686 SER ARG GLY VAL PRO ALA ILE TYR TYR GLY THR GLU GLN SEQRES 29 A 686 TYR MET SER GLY GLY THR ASP PRO ASP ASN ARG ALA ARG SEQRES 30 A 686 ILE PRO SER PHE SER THR SER THR THR ALA TYR GLN VAL SEQRES 31 A 686 ILE GLN LYS LEU ALA PRO LEU ARG LYS CYS ASN PRO ALA SEQRES 32 A 686 ILE ALA TYR GLY SER THR GLN GLU ARG TRP ILE ASN ASN SEQRES 33 A 686 ASP VAL LEU ILE TYR GLU ARG LYS PHE GLY SER ASN VAL SEQRES 34 A 686 ALA VAL VAL ALA VAL ASN ARG ASN LEU ASN ALA PRO ALA SEQRES 35 A 686 SER ILE SER GLY LEU VAL THR SER LEU PRO GLN GLY SER SEQRES 36 A 686 TYR ASN ASP VAL LEU GLY GLY LEU LEU ASN GLY ASN THR SEQRES 37 A 686 LEU SER VAL GLY SER GLY GLY ALA ALA SER ASN PHE THR SEQRES 38 A 686 LEU ALA ALA GLY GLY THR ALA VAL TRP GLN TYR THR ALA SEQRES 39 A 686 ALA THR ALA THR PRO THR ILE GLY HIS VAL GLY PRO MET SEQRES 40 A 686 MET ALA LYS PRO GLY VAL THR ILE THR ILE ASP GLY ARG SEQRES 41 A 686 GLY PHE GLY SER SER LYS GLY THR VAL TYR PHE GLY THR SEQRES 42 A 686 THR ALA VAL SER GLY ALA ASP ILE THR SER TRP GLU ASP SEQRES 43 A 686 THR GLN ILE LYS VAL LYS ILE PRO ALA VAL ALA GLY GLY SEQRES 44 A 686 ASN TYR ASN ILE LYS VAL ALA ASN ALA ALA GLY THR ALA SEQRES 45 A 686 SER ASN VAL TYR ASP ASN PHE GLU VAL LEU SER GLY ASP SEQRES 46 A 686 GLN VAL SER VAL ARG PHE VAL VAL ASN ASN ALA THR THR SEQRES 47 A 686 ALA LEU GLY GLN ASN VAL TYR LEU THR GLY SER VAL SER SEQRES 48 A 686 GLU LEU GLY ASN TRP ASP PRO ALA LYS ALA ILE GLY PRO SEQRES 49 A 686 MET TYR ASN GLN VAL VAL TYR GLN TYR PRO ASN TRP TYR SEQRES 50 A 686 TYR ASP VAL SER VAL PRO ALA GLY LYS THR ILE GLU PHE SEQRES 51 A 686 LYS PHE LEU LYS LYS GLN GLY SER THR VAL THR TRP GLU SEQRES 52 A 686 GLY GLY SER ASN HIS THR PHE THR ALA PRO SER SER GLY SEQRES 53 A 686 THR ALA THR ILE ASN VAL ASN TRP GLN PRO
HET MAL A 688 23 HET MAL A 689 23 HET MAL A 690 23 HET CA A 691 1 HET CA A 692 1
HETNAM MAL MALTOSE HETNAM CA CALCIUM ION
FORMUL 2 MAL 3(C12 H22 O11) FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *471(H2 O)
HELIX 1 A1 TRP A 54 ASN A 62 1 9 HELIX 2 A1' TYR A 65 GLY A 68 1 4 HELIX 3 A2 ILE A 115 ALA A 127 1 13 HELIX 4 A3 THR A 185 LYS A 192 1 8 HELIX 5 A4 ASN A 204 LEU A 221 1 18 HELIX 6 A5 PHE A 236 ASN A 248 1 13 HELIX 7 A6 PRO A 267 GLU A 275 1 9 HELIX 8 A7 PHE A 283 PHE A 293 1 11 HELIX 9 A8 MET A 300 ASP A 313 1 14 HELIX 10 A9 ARG A 339 THR A 351 1 13 HELIX 11 A10 THR A 385 CYS A 400 1 16 HELIX 12 A11 PRO A 402 TYR A 406 1 5
SHEET 1 AB8 9 VAL A 16 ILE A 20 0 SHEET 2 AB8 9 THR A 72 ILE A 76 1 N THR A 72 O VAL A 16 SHEET 3 AB8 9 ILE A 130 ALA A 137 1 N LYS A 131 O THR A 72 SHEET 4 AB8 9 GLY A 225 ASP A 229 1 O GLY A 225 N ILE A 134 SHEET 5 AB8 9 PHE A 253 GLU A 257 1 O PHE A 253 N ILE A 226 SHEET 6 AB8 9 SER A 279 LEU A 281 1 N SER A 279 O THR A 254 SHEET 7 AB8 9 GLN A 320 THR A 322 1 N VAL A 321 O LEU A 280 SHEET 8 AB8 9 VAL A 355 TYR A 359 1 N VAL A 355 O GLN A 320 SHEET 9 AB8 9 VAL A 16 ILE A 20 1 N ILE A 17 O PRO A 356 SHEET 1 B2 2 ILE A 87 TYR A 89 0 SHEET 2 B2 2 VAL A 92 ASN A 94 -1 O ASN A 94 N ILE A 87 SHEET 1 C4 4 PRO A 79 ILE A 83 0 SHEET 2 C4 4 TRP A 101 ASN A 109 -1 O TRP A 101 N ILE A 83 SHEET 3 C4 4 ARG A 156 ASP A 159 -1 N TYR A 158 O ARG A 103 SHEET 4 C4 4 THR A 162 GLY A 165 -1 O THR A 162 N ASP A 159 SHEET 1 E2 2 HIS A 140 ALA A 144 0 SHEET 2 E2 2 LEU A 197 LEU A 200 -1 O ALA A 198 N THR A 141 SHEET 1 I4 4 GLY A 407 ASN A 415 0 SHEET 2 I4 4 ASP A 417 PHE A 425 -1 O VAL A 418 N ASN A 415 SHEET 3 I4 4 SER A 427 ARG A 436 -1 N ASN A 428 O PHE A 425 SHEET 4 I4 4 GLY A 486 ALA A 494 -1 O GLY A 486 N ASN A 435 SHEET 1 J2 2 ALA A 442 SER A 445 0 SHEET 2 J2 2 PHE A 480 ALA A 483 -1 N LEU A 482 O ALA A 442 SHEET 1 M4 4 THR A 500 GLY A 505 0 SHEET 2 M4 4 VAL A 513 ARG A 520 -1 N ARG A 520 O THR A 500 SHEET 3 M4 4 THR A 547 ILE A 553 -1 N ILE A 553 O VAL A 513 SHEET 4 M4 4 ILE A 541 GLU A 545 -1 N SER A 543 O LYS A 550 SHEET 1 N5 5 MET A 507 LYS A 510 0 SHEET 2 N5 5 VAL A 575 LEU A 582 1 N GLU A 580 O MET A 507 SHEET 3 N5 5 GLY A 559 ASN A 567 -1 O ILE A 563 N TYR A 576 SHEET 4 N5 5 THR A 528 PHE A 531 1 O THR A 528 N ALA A 566 SHEET 5 N5 5 THR A 534 SER A 537 -1 O THR A 534 N PHE A 531 SHEET 1 O3 3 ALA A 678 TRP A 684 0 SHEET 2 O3 3 ASP A 585 VAL A 593 1 N ARG A 590 O ALA A 678 SHEET 3 O3 3 ASN A 635 PRO A 643 -1 O VAL A 642 N VAL A 587 SHEET 1 P3A 3 GLN A 602 SER A 609 0 SHEET 2 P3A 3 LYS A 646 GLN A 656 -1 O LYS A 655 N ASN A 603 SHEET 3 P3A 3 THR A 659 GLU A 663 -1 O THR A 659 N GLN A 656 SHEET 1 P3B 3 GLN A 602 SER A 609 0 SHEET 2 P3B 3 LYS A 646 GLN A 656 -1 O LYS A 655 N ASN A 603 SHEET 3 P3B 3 HIS A 668 ALA A 672 -1 N HIS A 668 O PHE A 650
SSBOND 1 CYS A 43 CYS A 50 1555 1555 1.99
LINK CA CA A 691 O ASN A 29 1555 1555 2.45 LINK CA CA A 691 OD1 ASP A 27 1555 1555 2.54 LINK CA CA A 691 OD1 ASN A 33 1555 1555 2.14 LINK CA CA A 691 OD1 ASN A 32 1555 1555 2.46 LINK CA CA A 691 OD2 ASP A 53 1555 1555 2.50 LINK CA CA A 691 O HOH A 720 1555 1555 2.34 LINK CA CA A 691 O GLY A 51 1555 1555 2.62 LINK CA CA A 692 OD1 ASP A 199 1555 1555 2.46 LINK CA CA A 692 OD2 ASP A 199 1555 1555 2.50 LINK CA CA A 692 O HOH A 716 1555 1555 2.33 LINK CA CA A 692 O HOH A 724 1555 1555 2.60 LINK CA CA A 692 O ILE A 190 1555 1555 2.58 LINK CA CA A 692 O HIS A 233 1555 1555 2.35 LINK CA CA A 692 O HOH A 729 1555 1555 2.36 LINK CA CA A 692 OD1 ASN A 139 1555 1555 2.30
CISPEP 1 ASP A 371 PRO A 372 0 3.66 CISPEP 2 GLY A 505 PRO A 506 0 -3.24 CISPEP 3 GLY A 623 PRO A 624 0 1.61 CISPEP 4 TYR A 633 PRO A 634 0 6.11
SITE 1 CAT 3 ASP A 229 GLU A 257 ASP A 328 SITE 1 CA1 6 ASP A 27 ASN A 29 ASN A 32 ASN A 33 SITE 2 CA1 6 GLY A 51 ASP A 53 SITE 1 CA2 4 ASN A 139 ILE A 190 ASP A 199 HIS A 233 SITE 1 MB1 5 TRP A 616 LYS A 651 TRP A 662 GLU A 663 SITE 2 MB1 5 ASN A 667 SITE 1 MB2 7 THR A 598 ALA A 599 GLY A 601 ASN A 603 SITE 2 MB2 7 ASN A 627 GLN A 628 TYR A 633 SITE 1 MB3 7 TYR A 301 GLU A 411 ARG A 412 TRP A 413 SITE 2 MB3 7 ILE A 414 GLY A 446 VAL A 448 SITE 1 AC1 10 GLU A 411 ARG A 412 TRP A 413 ILE A 414 SITE 2 AC1 10 GLY A 446 ALA A 539 ASP A 540 HOH A 723 SITE 3 AC1 10 HOH A 765 HOH A 873 SITE 1 AC2 5 TRP A 616 LYS A 651 ASN A 667 HOH A 790 SITE 2 AC2 5 HOH A 871 SITE 1 AC3 12 THR A 598 ALA A 599 LEU A 600 GLY A 601 SITE 2 AC3 12 GLN A 602 ASN A 603 ASN A 627 GLN A 628 SITE 3 AC3 12 TYR A 633 TRP A 636 HOH A1038 HOH A1114 SITE 1 AC4 7 ASP A 27 ASN A 29 ASN A 32 ASN A 33 SITE 2 AC4 7 GLY A 51 ASP A 53 HOH A 720 SITE 1 AC5 7 ASN A 139 ILE A 190 ASP A 199 HIS A 233 SITE 2 AC5 7 HOH A 716 HOH A 724 HOH A 729
CRYST1 120.363 110.935 66.429 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008308 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009014 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015054 0.00000