10 20 30 40 50 60 70 80 1CCN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT SEED PROTEIN 14-APR-93 1CCN
TITLE DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A TITLE 2 SLOW-COOLING ANNEALING PROTOCOL
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAMBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; SOURCE 3 ORGANISM_TAXID: 3721; SOURCE 4 STRAIN: SUBSP. ABYSSINICA
KEYWDS PLANT SEED PROTEIN
EXPDTA SOLUTION NMR
AUTHOR A.M.J.J.BONVIN,J.A.C.RULLMANN,R.M.J.N.LAMERICHS,R.BOELENS, AUTHOR 2 R.KAPTEIN
REVDAT 4 24-FEB-09 1CCN 1 VERSN REVDAT 3 01-APR-03 1CCN 1 JRNL REVDAT 2 31-JAN-94 1CCN 1 REMARK REVDAT 1 31-OCT-93 1CCN 0
JRNL AUTH A.M.J.J.BONVIN,R.BOELENS,R.KAPTEIN JRNL TITL DIRECT NOE REFINEMENT OF BIOMOLECULAR STRUCTURES JRNL TITL 2 USING 2D NMR DATA JRNL REF J.BIOMOL.NMR V. 1 305 1991 JRNL REFN ISSN 0925-2738 JRNL PMID 1841701 JRNL DOI 10.1007/BF01875523
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.J.J.BONVIN,J.A.C.RULLMANN,R.M.J.N.LAMERICHS, REMARK 1 AUTH 2 R.BOELENS,R.KAPTEIN REMARK 1 TITL "ENSEMBLE" ITERATIVE RELAXATION MATRIX APPROACH: A REMARK 1 TITL 2 NEW NMR REFINEMENT PROTOCOL APPLIED TO THE REMARK 1 TITL 3 SOLUTION STRUCTURE OF CRAMBIN REMARK 1 REF PROTEINS V. 15 385 1993 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.C.RULLMANN,A.M.J.J.BONVIN,R.BOELENS,R.KAPTEIN REMARK 1 TITL STRUCTURE DETERMINATION BY NMR-APPLICATION TO REMARK 1 TITL 2 CRAMBIN REMARK 1 EDIT D.M.SOUMPASIS, T.M.JOVIN REMARK 1 REF COMPUTATION OF BIOMOLECULAR 1 1992 REMARK 1 REF 2 STRUCTURES; ACHIEVEMENTS REMARK 1 REF 3 PROBLEMS, AND PERSPECTIVES REMARK 1 PUBL SPRINGER-VERLAG, BERLIN REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH R.M.J.M.LAMERICHS REMARK 1 TITL 2D NMR STUDIES OF BIOMOLECULES: PROTEIN STRUCTURE REMARK 1 TITL 2 AND PROTEIN-DNA INTERACTIONS REMARK 1 REF THESIS 1989 REMARK 1 REFN ISSN 3540559515 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.M.J.N.LAMERICHS,L.J.BERLINER,R.BOELENS,A.DEMARCO, REMARK 1 AUTH 2 M.LLINAS,R.KAPTEIN REMARK 1 TITL SECONDARY STRUCTURE AND HYDROGEN BONDING OF REMARK 1 TITL 2 CRAMBIN IN SOLUTION REMARK 1 REF EUR.J.BIOCHEM. V. 171 307 1988 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.A.W.H.VERMEULEN,R.M.J.M.LAMERICHS,L.J.BERLINER, REMARK 1 AUTH 2 A.DEMARCO,M.LLINAS,R.BOELENS,J.ALLEMAN,R.KAPTEIN REMARK 1 TITL 1H NMR CHARACTERIZATION OF TWO CRAMBIN SPECIES REMARK 1 REF FEBS LETT. V. 219 426 1987 REMARK 1 REFN ISSN 0014-5793
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMOS REMARK 3 AUTHORS : VAN GUNSTEREN,BERENDSEN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1CCN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 PHE A 13 CB - CG - CD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR A 29 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 44 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 21 -76.05 -140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 29 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CCM RELATED DB: PDB
DBREF 1CCN A 1 46 UNP P01542 CRAM_CRAAB 1 46
SEQRES 1 A 46 THR THR CYS CYS PRO SER ILE VAL ALA ARG SER ASN PHE SEQRES 2 A 46 ASN VAL CYS ARG LEU PRO GLY THR PRO GLU ALA LEU CYS SEQRES 3 A 46 ALA THR TYR THR GLY CYS ILE ILE ILE PRO GLY ALA THR SEQRES 4 A 46 CYS PRO GLY ASP TYR ALA ASN
HELIX 1 H1 ILE A 7 LEU A 18 13/10 CONFORMATION RES 17,18 12 HELIX 2 H2 GLU A 23 THR A 30 1 8
SHEET 1 S1 2 THR A 1 CYS A 4 0 SHEET 2 S1 2 CYS A 32 ILE A 35 -1
SSBOND 1 CYS A 3 CYS A 40 1555 1555 2.05 SSBOND 2 CYS A 4 CYS A 32 1555 1555 2.03 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.05
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000