10 20 30 40 50 60 70 80 1C8E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER VIRUS 05-MAY-00 1C8E
TITLE FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FELINE PANLEUKOPENIA VIRUS CAPSID; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE PARVOVIRUS; SOURCE 3 ORGANISM_TAXID: 10785
KEYWDS BETA BARREL, VIRAL CAPSID, ICOSAHEDRAL SYMMETRY, ICOSAHEDRAL VIRUS, KEYWDS 2 VIRUS
EXPDTA X-RAY DIFFRACTION
AUTHOR M.G.ROSSMANN,A.A.SIMPSON
REVDAT 4 30-NOV-11 1C8E 1 REMARK VERSN REVDAT 3 24-FEB-09 1C8E 1 VERSN REVDAT 2 16-AUG-00 1C8E 1 JRNL REMARK MTRIX1 MTRIX2 REVDAT 2 2 1 MTRIX3 REVDAT 1 09-AUG-00 1C8E 0
JRNL AUTH A.A.SIMPSON,V.CHANDRASEKAR,B.HEBERT,G.M.SULLIVAN, JRNL AUTH 2 M.G.ROSSMANN,C.R.PARRISH JRNL TITL HOST RANGE AND VARIABILITY OF CALCIUM BINDING BY SURFACE JRNL TITL 2 LOOPS IN THE CAPSIDS OF CANINE AND FELINE PARVOVIRUSES. JRNL REF J.MOL.BIOL. V. 300 597 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10884355 JRNL DOI 10.1006/JMBI.2000.3868
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.AGBANDJE,R.MCKENNA,M.G.ROSSMANN,M.L.STRASSHEIM,C.R.PARRISH REMARK 1 TITL STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA VIRUS EMPTY REMARK 1 TITL 2 PARTICLES REMARK 1 REF PROTEIN SCI. V. 16 155 1993 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.S.CHAPMAN,M.G.ROSSMANN REMARK 1 TITL STRUCTURAL REFINEMENT OF THE DNA-CONTAINING CAPSID OF CANINE REMARK 1 TITL 2 PARVOVIRUS USING RSREF, A RESOLUTION-DEPENDENT REMARK 1 TITL 3 STEREOCHEMICALLY RESTRAINED REAL-SPACE REFINEMENT METHOD REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 129 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444995007268 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.L.LLAMAS-SAIZ,M.AGBANDJE-MCKENNA,J.S.PARKER,A.T.WAHID, REMARK 1 AUTH 2 C.R.PARRISH,M.G.ROSSMANN REMARK 1 TITL STRUCTURAL ANALYSIS OF A MUTATION IN CANINE PARVOVIRUS WHICH REMARK 1 TITL 2 CONTROLS ANTIGENICITY AND HOST RANGE REMARK 1 REF VIROLOGY V. 225 65 1996 REMARK 1 REFN ISSN 0042-6822 REMARK 1 DOI 10.1006/VIRO.1996.0575 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.TSAO,M.S.CHAPMAN,M.AGBANDJE,W..KELLER,K.SMITH,H.WU,M.LUO, REMARK 1 AUTH 2 T.J.SMITH,M.G.ROSSMANN,R.W.COMPANS,C.R.PARRISH REMARK 1 TITL THE 3-DIMENSIONAL STRUCTURE OF CANINE PARVOVIRUS AND ITS REMARK 1 TITL 2 FUNCTIONAL IMPLICATIONS REMARK 1 REF SCIENCE V. 251 1456 1991 REMARK 1 REFN ISSN 0036-8075
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 725465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.288 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 0 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.68 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED LEAST SQUARES WITH STRICTLY REMARK 3 ENFORCED ICOSAHEDRAL SYMMETRY
REMARK 4 REMARK 4 1C8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-00. REMARK 100 THE RCSB ID CODE IS RCSB001463.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 810220 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: GLRF, TRANSF, ENVELOPE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75-1.5% PEG8000, 5 MM EDTA, 20 MM REMARK 280 BIS-TRIS PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K
REMARK 285 REMARK 285 THE ENTRY COORDINATES REMARK 285 ARE NOT PRESENTED IN THE STANDARD CRYSTAL FRAME.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 126.98100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I).
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000
REMARK 450 REMARK 450 SOURCE REMARK 450 VIRUS GROWN IN A CELL CULTURE OF NORDEN LABORATORY REMARK 450 FELINE KIDNEY CELL.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 361 REMARK 465 GLY A 362 REMARK 465 GLY A 363 REMARK 465 ALA A 364 REMARK 465 GLN A 365 REMARK 465 THR A 366 REMARK 465 ASP A 367 REMARK 465 GLU A 368 REMARK 465 ASN A 369 REMARK 465 GLN A 370 REMARK 465 ALA A 371 REMARK 465 ALA A 372 REMARK 465 ASP A 373 REMARK 465 GLY A 374
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 404 N - CA - C ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 54 -138.96 -88.40 REMARK 500 ASN A 56 66.55 76.56 REMARK 500 ASN A 86 30.51 -151.40 REMARK 500 LYS A 93 108.76 -33.46 REMARK 500 ALA A 116 129.18 -173.88 REMARK 500 GLU A 135 147.24 -171.23 REMARK 500 VAL A 139 -61.08 -102.71 REMARK 500 SER A 156 82.11 -59.55 REMARK 500 ALA A 157 36.27 -65.31 REMARK 500 GLN A 159 -85.96 55.55 REMARK 500 THR A 203 -159.09 -128.57 REMARK 500 THR A 225 132.41 -38.34 REMARK 500 ASN A 321 -77.39 -75.53 REMARK 500 ALA A 334 -156.09 -149.41 REMARK 500 THR A 349 -7.67 -47.13 REMARK 500 ARG A 382 -68.27 57.88 REMARK 500 GLN A 386 117.78 18.88 REMARK 500 LYS A 387 119.06 -33.22 REMARK 500 HIS A 403 -148.90 -172.04 REMARK 500 GLN A 404 84.00 174.27 REMARK 500 ASP A 405 -30.76 -141.89 REMARK 500 THR A 406 9.05 -152.89 REMARK 500 PHE A 420 -111.46 66.39 REMARK 500 ASN A 421 85.65 66.99 REMARK 500 GLN A 491 -86.55 -70.68 REMARK 500 LYS A 501 130.71 -170.88 REMARK 500 ALA A 516 -102.53 3.42 REMARK 500 ASN A 517 98.94 152.88 REMARK 500 MET A 518 130.20 -35.83 REMARK 500 GLN A 558 -61.25 -0.93 REMARK 500 GLN A 577 52.68 -103.53 REMARK 500 ALA A 579 116.67 164.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FPV RELATED DB: PDB REMARK 900 CONTAINS THIS STRUCTURE IN THE PRESENCE OF CALCIUM IONS REMARK 900 RELATED ID: 4DPV RELATED DB: PDB REMARK 900 CONTAINS THE CLOSELY RELATED CANINE PARVOVIRUS REMARK 900 RELATED ID: 2CAS RELATED DB: PDB REMARK 900 CONTAINS THE CLOSELY RELATED CANINE PARVOVIRUS REMARK 900 RELATED ID: 1IJS RELATED DB: PDB REMARK 900 CONTAINS THE A300D MUTANT OF THE CLOSELY RELATED CANINE REMARK 900 PARVOVIRUS REMARK 900 RELATED ID: 1MVM RELATED DB: PDB REMARK 900 CONTAINS THE RELATED MINUTE VIRUS OF MOUSE REMARK 900 RELATED ID: 1C8D RELATED DB: PDB REMARK 900 CONTAINS THE REFINED STRUCTURE OF A300D MUTANT OF CANINE REMARK 900 PARVOVIRUS REMARK 900 RELATED ID: 1C8F RELATED DB: PDB REMARK 900 CONTAINS THE REFINED STRUCTURE OF FELINE PANLEUKOPENIA REMARK 900 VIRUS AT PH 7.5 REMARK 900 RELATED ID: 1C8G RELATED DB: PDB REMARK 900 CONTAINS THE STRUCTURE OF FELINE PANLEUKOPENIA VIRUS AT PH REMARK 900 6.2 REMARK 900 RELATED ID: 1C8H RELATED DB: PDB REMARK 900 CONTAINS THE REFINED STRUCTURE OF CANINE PARVOVIRUS AT PH REMARK 900 5.5
DBREF 1C8E A 37 584 UNP P90438 P90438_FPV 37 584
SEQADV 1C8E GLU A 104 UNP P90438 GLN 104 CONFLICT SEQADV 1C8E ILE A 484 UNP P90438 VAL 484 CONFLICT SEQADV 1C8E GLN A 509 UNP P90438 GLU 509 CONFLICT
SEQRES 1 A 548 GLY VAL GLY ILE SER THR GLY THR PHE ASN ASN GLN THR SEQRES 2 A 548 GLU PHE LYS PHE LEU GLU ASN GLY TRP VAL GLU ILE THR SEQRES 3 A 548 ALA ASN SER SER ARG LEU VAL HIS LEU ASN MET PRO GLU SEQRES 4 A 548 SER GLU ASN TYR LYS ARG VAL VAL VAL ASN ASN MET ASP SEQRES 5 A 548 LYS THR ALA VAL LYS GLY ASN MET ALA LEU ASP ASP ILE SEQRES 6 A 548 HIS VAL GLU ILE VAL THR PRO TRP SER LEU VAL ASP ALA SEQRES 7 A 548 ASN ALA TRP GLY VAL TRP PHE ASN PRO GLY ASP TRP GLN SEQRES 8 A 548 LEU ILE VAL ASN THR MET SER GLU LEU HIS LEU VAL SER SEQRES 9 A 548 PHE GLU GLN GLU ILE PHE ASN VAL VAL LEU LYS THR VAL SEQRES 10 A 548 SER GLU SER ALA THR GLN PRO PRO THR LYS VAL TYR ASN SEQRES 11 A 548 ASN ASP LEU THR ALA SER LEU MET VAL ALA LEU ASP SER SEQRES 12 A 548 ASN ASN THR MET PRO PHE THR PRO ALA ALA MET ARG SER SEQRES 13 A 548 GLU THR LEU GLY PHE TYR PRO TRP LYS PRO THR ILE PRO SEQRES 14 A 548 THR PRO TRP ARG TYR TYR PHE GLN TRP ASP ARG THR LEU SEQRES 15 A 548 ILE PRO SER HIS THR GLY THR SER GLY THR PRO THR ASN SEQRES 16 A 548 VAL TYR HIS GLY THR ASP PRO ASP ASP VAL GLN PHE TYR SEQRES 17 A 548 THR ILE GLU ASN SER VAL PRO VAL HIS LEU LEU ARG THR SEQRES 18 A 548 GLY ASP GLU PHE ALA THR GLY THR PHE PHE PHE ASP CYS SEQRES 19 A 548 LYS PRO CYS ARG LEU THR HIS THR TRP GLN THR ASN ARG SEQRES 20 A 548 ALA LEU GLY LEU PRO PRO PHE LEU ASN SER LEU PRO GLN SEQRES 21 A 548 SER GLU GLY ALA THR ASN PHE GLY ASP ILE GLY VAL GLN SEQRES 22 A 548 GLN ASP LYS ARG ARG GLY VAL THR GLN MET GLY ASN THR SEQRES 23 A 548 ASP TYR ILE THR GLU ALA THR ILE MET ARG PRO ALA GLU SEQRES 24 A 548 VAL GLY TYR SER ALA PRO TYR TYR SER PHE GLU ALA SER SEQRES 25 A 548 THR GLN GLY PRO PHE LYS THR PRO ILE ALA ALA GLY ARG SEQRES 26 A 548 GLY GLY ALA GLN THR ASP GLU ASN GLN ALA ALA ASP GLY SEQRES 27 A 548 ASP PRO ARG TYR ALA PHE GLY ARG GLN HIS GLY GLN LYS SEQRES 28 A 548 THR THR THR THR GLY GLU THR PRO GLU ARG PHE THR TYR SEQRES 29 A 548 ILE ALA HIS GLN ASP THR GLY ARG TYR PRO GLU GLY ASP SEQRES 30 A 548 TRP ILE GLN ASN ILE ASN PHE ASN LEU PRO VAL THR ASN SEQRES 31 A 548 ASP ASN VAL LEU LEU PRO THR ASP PRO ILE GLY GLY LYS SEQRES 32 A 548 THR GLY ILE ASN TYR THR ASN ILE PHE ASN THR TYR GLY SEQRES 33 A 548 PRO LEU THR ALA LEU ASN ASN VAL PRO PRO VAL TYR PRO SEQRES 34 A 548 ASN GLY GLN ILE TRP ASP LYS GLU PHE ASP THR ASP LEU SEQRES 35 A 548 LYS PRO ARG LEU HIS ILE ASN ALA PRO PHE VAL CYS GLN SEQRES 36 A 548 ASN ASN CYS PRO GLY GLN LEU PHE VAL LYS VAL ALA PRO SEQRES 37 A 548 ASN LEU THR ASN GLN TYR ASP PRO ASP ALA SER ALA ASN SEQRES 38 A 548 MET SER ARG ILE VAL THR TYR SER ASP PHE TRP TRP LYS SEQRES 39 A 548 GLY LYS LEU VAL PHE LYS ALA LYS LEU ARG ALA SER HIS SEQRES 40 A 548 THR TRP ASN PRO ILE GLN GLN MET SER ILE ASN VAL ASP SEQRES 41 A 548 ASN GLN PHE ASN TYR VAL PRO ASN ASN ILE GLY ALA MET SEQRES 42 A 548 LYS ILE VAL TYR GLU LYS SER GLN LEU ALA PRO ARG LYS SEQRES 43 A 548 LEU TYR
HELIX 1 1 ASN A 86 ALA A 91 1 6 HELIX 2 2 ALA A 116 PHE A 121 1 6 HELIX 3 3 ASN A 122 THR A 132 1 11 HELIX 4 4 PRO A 187 SER A 192 5 6 HELIX 5 5 ASP A 237 VAL A 241 5 5 HELIX 6 6 THR A 245 VAL A 250 1 6 HELIX 7 7 THR A 281 LEU A 285 5 5 HELIX 8 8 TYR A 409 ASP A 413 5 5 HELIX 9 9 THR A 425 ASP A 427 5 3 HELIX 10 10 ASN A 443 PHE A 448 1 6 HELIX 11 11 ASN A 557 TYR A 561 5 5
SHEET 1 A10 THR A 49 PHE A 53 0 SHEET 2 A10 TRP A 58 ASN A 72 -1 O GLU A 60 N LYS A 52 SHEET 3 A10 THR A 523 LEU A 539 -1 N SER A 525 O LEU A 71 SHEET 4 A10 MET A 133 SER A 154 -1 N SER A 134 O LYS A 538 SHEET 5 A10 CYS A 273 ARG A 274 -1 O CYS A 273 N LEU A 136 SHEET 6 A10 MET A 133 SER A 154 -1 N LEU A 136 O CYS A 273 SHEET 7 A10 PHE A 266 PHE A 267 -1 N PHE A 266 O PHE A 141 SHEET 8 A10 MET A 133 SER A 154 -1 O PHE A 141 N PHE A 266 SHEET 9 A10 PHE A 261 ALA A 262 -1 O PHE A 261 N ILE A 145 SHEET 10 A10 MET A 133 SER A 154 -1 N ILE A 145 O PHE A 261 SHEET 1 B 7 LYS A 80 VAL A 84 0 SHEET 2 B 7 HIS A 102 LEU A 111 -1 O HIS A 102 N VAL A 84 SHEET 3 B 7 THR A 206 TYR A 211 -1 O THR A 206 N LEU A 111 SHEET 4 B 7 HIS A 102 LEU A 111 -1 N ILE A 105 O TYR A 210 SHEET 5 B 7 GLN A 497 VAL A 502 -1 O VAL A 500 N SER A 110 SHEET 6 B 7 LEU A 173 ASP A 178 -1 N MET A 174 O LYS A 501 SHEET 7 B 7 VAL A 252 LEU A 255 -1 N HIS A 253 O VAL A 175 SHEET 1 C 2 ASP A 215 LEU A 218 0 SHEET 2 C 2 ASN A 231 GLY A 235 -1 N VAL A 232 O THR A 217 SHEET 1 D 2 GLU A 335 VAL A 336 0 SHEET 2 D 2 THR A 455 ALA A 456 1 N ALA A 456 O GLU A 335 SHEET 1 E 2 PHE A 345 SER A 348 0 SHEET 2 E 2 GLY A 351 LYS A 354 -1 N GLY A 351 O SER A 348 SHEET 1 F 2 ARG A 377 PHE A 380 0 SHEET 2 F 2 GLU A 396 THR A 399 -1 N GLU A 396 O PHE A 380 SHEET 1 G 2 ILE A 415 GLN A 416 0 SHEET 2 G 2 VAL A 429 LEU A 430 -1 N LEU A 430 O ILE A 415 SHEET 1 H 2 TRP A 470 LYS A 472 0 SHEET 2 H 2 PHE A 488 CYS A 490 1 O PHE A 488 N ASP A 471
SSBOND 1 CYS A 490 CYS A 494 1555 1555 2.05
CISPEP 1 PRO A 160 PRO A 161 0 0.99 CISPEP 2 LEU A 422 PRO A 423 0 -0.42 CISPEP 3 TYR A 464 PRO A 465 0 -0.02
CRYST1 254.154 253.962 380.288 90.00 92.83 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.003935 0.000000 0.000194 0.00000
SCALE2 0.000000 0.003938 0.000000 0.00000
SCALE3 0.000000 0.000000 0.002633 0.00000