1C39 - Header Asymmetric Unit

HEADER SIGNALING PROTEIN 25-JUL-99 1C39

TITLE STRUCTURE OF CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR BOUND TO TITLE 2 PENTAMANNOSYL PHOSPHATE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACYTOPLASMIC DOMAIN; COMPND 5 SYNONYM: CDMPR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 5B1-4; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: 5B1-4; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS

KEYWDS RECEPTOR, CATION DEPENDENT MANNOSE 6-PHOSPHATE, P-TYPE LECT KEYWDS 2 TRANSPORT, SIGNALING PROTEIN

EXPDTA X-RAY DIFFRACTION

AUTHOR L.J.OLSON,J.ZHANG,Y.C.LEE,N.M.DAHMS,J.J.-P.KIM

REVDAT 4 13-JUL-11 1C39 1 VERSN REVDAT 3 24-FEB-09 1C39 1 VERSN REVDAT 2 01-APR-03 1C39 1 JRNL REVDAT 1 14-JAN-00 1C39 0

JRNL AUTH L.J.OLSON,J.ZHANG,Y.C.LEE,N.M.DAHMS,J.J.KIM JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF PHOSPHORYLATED HIGH JRNL TITL 2 MANNOSE OLIGOSACCHARIDES BY THE CATION-DEPENDENT MANNOSE JRNL TITL 3 6-PHOSPHATE RECEPTOR. JRNL REF J.BIOL.CHEM. V. 274 29889 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 10514470 JRNL DOI 10.1074/JBC.274.42.29889

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.L.ROBERTS,D.J.WEIX,N.M.DAHMS,J.J.KIM REMARK 1 TITL MOLECULAR BASIS OF LYSOSOMAL ENZYME RECOGNITION:ENZYME REMARK 1 TITL 2 RECOGNITION: THREE- DIMENSIONAL STRUCTURE OF THE REMARK 1 TITL 3 CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 93 639 1998 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)81192-7

REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 146959.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 27632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2243 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3359 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 295 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 2.67000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.27 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MAN.PAR REMARK 3 PARAMETER FILE 5 : NAG.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : MAN.TOP REMARK 3 TOPOLOGY FILE 5 : NAG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING

REMARK 4 REMARK 4 1C39 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-99. REMARK 100 THE RCSB ID CODE IS RCSB009400.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 6.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMEN REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1M6P REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.40

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 38.83 -151.17 REMARK 500 ALA A 125 123.61 -171.14 REMARK 500 ASP B 43 36.93 -98.55 REMARK 500 HIS B 58 10.47 -146.71 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 199 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 649 O REMARK 620 2 HOH B 650 O 171.2 REMARK 620 3 P3M B2200 O3P 84.7 87.6 REMARK 620 4 HOH B 659 O 93.9 93.4 174.7 REMARK 620 5 ASP B 103 OD1 87.8 88.8 97.3 77.6 REMARK 620 6 HOH B 671 O 95.1 89.9 95.2 90.0 167.4 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3M A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3M B 2200

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6P RELATED DB: PDB REMARK 900 STRUCRURE OF CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR REMARK 900 BOUND TO MANNOSE 6-PHOSPHATE

DBREF 1C39 A 3 154 UNP P11456 MPRD_BOVIN 31 182 DBREF 1C39 B 3 154 UNP P11456 MPRD_BOVIN 31 182

SEQADV 1C39 GLN A 31 UNP P11456 ASN 59 MUTATION SEQADV 1C39 GLN A 57 UNP P11456 ASN 85 MUTATION SEQADV 1C39 GLN A 68 UNP P11456 ASN 96 MUTATION SEQADV 1C39 GLN A 87 UNP P11456 ASN 115 MUTATION SEQADV 1C39 GLN B 31 UNP P11456 ASN 59 MUTATION SEQADV 1C39 GLN B 57 UNP P11456 ASN 85 MUTATION SEQADV 1C39 GLN B 68 UNP P11456 ASN 96 MUTATION SEQADV 1C39 GLN B 87 UNP P11456 ASN 115 MUTATION

SEQRES 1 A 152 GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY LYS GLU SEQRES 2 A 152 SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU THR PRO SEQRES 3 A 152 LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY GLN SER SEQRES 4 A 152 PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS ARG GLU SEQRES 5 A 152 ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL GLN ILE SEQRES 6 A 152 GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY ARG PHE SEQRES 7 A 152 ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP ILE MET SEQRES 8 A 152 LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN HIS CYS SEQRES 9 A 152 GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SER CYS SEQRES 10 A 152 ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO VAL SER SEQRES 11 A 152 GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR LEU PHE SEQRES 12 A 152 GLU MET ASP SER SER LEU ALA CYS SER SEQRES 1 B 152 GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY LYS GLU SEQRES 2 B 152 SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU THR PRO SEQRES 3 B 152 LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY GLN SER SEQRES 4 B 152 PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS ARG GLU SEQRES 5 B 152 ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL GLN ILE SEQRES 6 B 152 GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY ARG PHE SEQRES 7 B 152 ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP ILE MET SEQRES 8 B 152 LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN HIS CYS SEQRES 9 B 152 GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SER CYS SEQRES 10 B 152 ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO VAL SER SEQRES 11 B 152 GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR LEU PHE SEQRES 12 B 152 GLU MET ASP SER SER LEU ALA CYS SER

MODRES 1C39 ASN A 81 ASN GLYCOSYLATION SITE MODRES 1C39 ASN B 81 ASN GLYCOSYLATION SITE

HET NAG A 201 14 HET NAG A 202 14 HET NAG B 201 14 HET NAG B 202 14 HET MN A 199 1 HET MN B 199 1 HET P3M A1200 38 HET P3M B2200 38

HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM MN MANGANESE (II) ION HETNAM P3M 1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE

FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 MN 2(MN 2+) FORMUL 7 P3M 2(C18 H33 O19 P) FORMUL 9 HOH *171(H2 O)

HELIX 1 1 SER A 16 LEU A 26 1 11 HELIX 2 2 THR A 27 PHE A 30 5 4 HELIX 3 3 HIS A 105 GLU A 109 5 5 HELIX 4 4 SER A 150 CYS A 153 5 4 HELIX 5 5 SER B 16 LEU B 26 1 11 HELIX 6 6 THR B 27 PHE B 30 5 4 HELIX 7 7 HIS B 105 GLU B 109 5 5 HELIX 8 8 SER B 150 CYS B 153 5 4

SHEET 1 A 8 PHE A 34 VAL A 38 0 SHEET 2 A 8 TYR A 45 PHE A 49 -1 N TYR A 45 O VAL A 38 SHEET 3 A 8 ALA A 62 GLN A 68 -1 N VAL A 65 O VAL A 48 SHEET 4 A 8 LYS A 73 GLN A 87 -1 O LYS A 73 N GLN A 68 SHEET 5 A 8 TRP A 91 GLY A 98 -1 N MET A 93 O PHE A 86 SHEET 6 A 8 ALA A 113 CYS A 119 -1 N ALA A 113 O TYR A 96 SHEET 7 A 8 PHE A 142 SER A 149 1 O TYR A 143 N VAL A 114 SHEET 8 A 8 ASP A 126 GLU A 134 -1 O ASP A 126 N ASP A 148 SHEET 1 B 8 PHE B 34 VAL B 38 0 SHEET 2 B 8 TYR B 45 PHE B 49 -1 N TYR B 45 O VAL B 38 SHEET 3 B 8 ALA B 62 GLN B 68 -1 N VAL B 65 O VAL B 48 SHEET 4 B 8 GLU B 74 GLN B 87 -1 N THR B 75 O GLN B 66 SHEET 5 B 8 TRP B 91 LYS B 97 -1 N MET B 93 O PHE B 86 SHEET 6 B 8 ALA B 113 CYS B 119 -1 N ALA B 113 O TYR B 96 SHEET 7 B 8 PHE B 142 SER B 149 1 O TYR B 143 N VAL B 114 SHEET 8 B 8 ASP B 126 GLU B 134 -1 O ASP B 126 N ASP B 148

SSBOND 1 CYS A 6 CYS A 52 1555 1555 2.03 SSBOND 2 CYS A 106 CYS A 141 1555 1555 2.02 SSBOND 3 CYS A 119 CYS A 153 1555 1555 2.03 SSBOND 4 CYS B 6 CYS B 52 1555 1555 2.03 SSBOND 5 CYS B 106 CYS B 141 1555 1555 2.02 SSBOND 6 CYS B 119 CYS B 153 1555 1555 2.03

LINK O4 NAG A 201 C1 NAG A 202 1555 1555 1.39 LINK O4 NAG B 201 C1 NAG B 202 1555 1555 1.39 LINK ND2 ASN A 81 C1 NAG A 201 1555 1555 1.45 LINK ND2 ASN B 81 C1 NAG B 201 1555 1555 1.45 LINK O4 NAG A 201 O5 NAG A 202 1555 1555 1.81 LINK MN MN B 199 O HOH B 649 1555 1555 2.09 LINK MN MN B 199 O HOH B 650 1555 1555 2.22 LINK MN MN B 199 O3P P3M B2200 1555 1555 2.25 LINK MN MN B 199 O HOH B 659 1555 1555 2.54 LINK MN MN B 199 OD1 ASP B 103 1555 1555 2.33 LINK MN MN B 199 O HOH B 671 1555 1555 2.14 LINK O4 NAG B 201 O5 NAG B 202 1555 1555 1.84

CISPEP 1 SER A 41 PRO A 42 0 -0.20 CISPEP 2 SER B 41 PRO B 42 0 0.13

SITE 1 AC1 4 SER A 60 ASN A 81 GLU A 82 NAG A 202 SITE 1 AC2 1 NAG A 201 SITE 1 AC3 4 ASN B 81 GLU B 82 NAG B 202 HOH B 656 SITE 1 AC4 2 ARG B 79 NAG B 201 SITE 1 AC5 3 ASP A 103 ARG A 111 P3M A1200 SITE 1 AC6 6 ASP B 103 HOH B 649 HOH B 650 HOH B 659 SITE 2 AC6 6 HOH B 671 P3M B2200 SITE 1 AC7 15 LYS A 12 PRO A 42 ASP A 43 TYR A 45 SITE 2 AC7 15 GLN A 66 GLN A 68 TYR A 102 ASP A 103 SITE 3 AC7 15 ASN A 104 HIS A 105 ARG A 111 GLU A 133 SITE 4 AC7 15 ARG A 135 TYR A 143 MN A 199 SITE 1 AC8 15 ASP B 43 TYR B 45 GLN B 66 GLN B 68 SITE 2 AC8 15 TYR B 102 ASP B 103 ASN B 104 HIS B 105 SITE 3 AC8 15 ARG B 111 GLU B 133 ARG B 135 TYR B 143 SITE 4 AC8 15 MN B 199 HOH B 649 HOH B 650

CRYST1 42.840 79.310 55.570 90.00 100.33 90.00 P 1 21 1 4

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.023343 0.000000 0.004255 0.00000

SCALE2 0.000000 0.012609 0.000000 0.00000

SCALE3 0.000000 0.000000 0.018292 0.00000