10 20 30 40 50 60 70 80 1C2X - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBOSOME 28-JUL-99 1C2X
TITLE 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP TITLE 2 AT 7.5 ANGSTROMS RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5S RIBOSOMAL RNA; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: 5S RRNA; COMPND 5 OTHER_DETAILS: THIRD OF THE 3 RRNA CHAINS OF THE RIBOSOME
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM
KEYWDS 5S RRNA, 23S RRNA, RIBOSOME, LARGE RIBOSOMAL SUBUNIT, KEYWDS 2 PROTEIN BIOSYNTHESIS, RIBONUCLEIC ACID, EM-RECONSTRUCTION, KEYWDS 3 ATOMIC STRUCTURE, 3D ARRANGEMENT, FITTING
EXPDTA ELECTRON MICROSCOPY
AUTHOR R.BRIMACOMBE,F.MUELLER
REVDAT 3 24-FEB-09 1C2X 1 VERSN REVDAT 2 01-APR-03 1C2X 1 JRNL REVDAT 1 10-APR-00 1C2X 0
JRNL AUTH F.MUELLER,I.SOMMER,P.BARANOV,R.MATADEEN,M.STOLDT, JRNL AUTH 2 J.WOHNERT,M.GORLACH,M.VAN HEEL,R.BRIMACOMBE JRNL TITL THE 3D ARRANGEMENT OF THE 23 S AND 5 S RRNA IN THE JRNL TITL 2 ESCHERICHIA COLI 50 S RIBOSOMAL SUBUNIT BASED ON A JRNL TITL 3 CRYO-ELECTRON MICROSCOPIC RECONSTRUCTION AT 7.5 A JRNL TITL 4 RESOLUTION. JRNL REF J.MOL.BIOL. V. 298 35 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10756104 JRNL DOI 10.1006/JMBI.2000.3635
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.MUELLER,R.BRIMACOMBE REMARK 1 TITL A NEW MODEL FOR THE THREE-DIMENSIONAL FOLDING OF REMARK 1 TITL 2 ESCHERICHIA COLI 16S RIBOSOMAL RNA. I. FITTING THE REMARK 1 TITL 3 RNA TO A 3D ELECTRON MICROSCOPIC MAP AT 20 REMARK 1 TITL 4 ANGSTROMS REMARK 1 REF J.MOL.BIOL. V. 271 524 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1997.1210 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.MUELLER,R.BRIMACOMBE REMARK 1 TITL A NEW MODEL FOR THE THREE-DIMENSIONAL FOLDING OF REMARK 1 TITL 2 ESCHERICHIA COLI 16S RIBOSOMAL RNA. II. THE REMARK 1 TITL 3 RNA-PROTEIN INTERACTION DATA REMARK 1 REF J.MOL.BIOL. V. 271 545 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1997.1211 REMARK 1 REFERENCE 3 REMARK 1 AUTH F.MUELLER,H.STARK,M.VAN HEEL,J.RINKE-APPEL, REMARK 1 AUTH 2 R.BRIMACOMBE REMARK 1 TITL A NEW MODEL FOR THE THREE-DIMENSIONAL FOLDING OF REMARK 1 TITL 2 ESCHERICHIA COLI 16S RIBOSOMAL RNA. III. THE REMARK 1 TITL 3 TOPOGRAPHY OF THE FUNCTIONAL CENTRE REMARK 1 REF J.MOL.BIOL. V. 271 566 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1997.1212
REMARK 2 REMARK 2 RESOLUTION. 7.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1CSV REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : NULL REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL
REMARK 4 REMARK 4 1C2X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-99. REMARK 100 THE RCSB ID CODE IS RCSB001272.
REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ASYMMETRIC REMARK 245 NAME OF SAMPLE : NULL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : NULL REMARK 245 DETECTOR TYPE : NULL REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : NULL REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : NULL REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : NULL REMARK 245 ACCELERATION VOLTAGE (KV) : NULL REMARK 245 IMAGING DETAILS : NULL
REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 1C2X C 1 120 PDB 1C2X 1C2X 1 120
SEQRES 1 C 120 U G C C U G G C G G C C G SEQRES 2 C 120 U A G C G C G G U G G U C SEQRES 3 C 120 C C A C C U G A C C C C A SEQRES 4 C 120 U G C C G A A C U C A G A SEQRES 5 C 120 A G U G A A A C G C C G U SEQRES 6 C 120 A G C G C C G A U G G U A SEQRES 7 C 120 G U G U G G G G U C U C C SEQRES 8 C 120 C C A U G C G A G A G U A SEQRES 9 C 120 G G G A A C U G C C A G G SEQRES 10 C 120 C A U
HELIX 1 I U C 1 G C 10 1I 10 HELIX 2 I C C 110 A C 119 1I 10 HELIX 3 IID G C 16 C C 17 1IID1 2 HELIX 4 IID G C 67 C C 68 1IID1 2 HELIX 5 IID G C 18 G C 23 1IID2 6 HELIX 6 IID C C 60 U C 65 1IID2 6 HELIX 7 III C C 31 A C 34 1III 4 HELIX 8 III U C 48 G C 51 1III 4 HELIX 9 IV G C 79 G C 86 1IV 8 HELIX 10 IV C C 90 C C 97 1IV 8 HELIX 11 V C C 70 U C 74 1V 5 HELIX 12 V G C 102 G C 106 1V 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000