10 20 30 40 50 60 70 80 1BXG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER AMINO ACID DEHYDROGENASE 02-OCT-98 1BXG
TITLE PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX TITLE 2 WITH NAD+ AND BETA-PHENYLPROPIONATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHENYLALANINE DEHYDROGENASE; COMPND 8 CHAIN: B; COMPND 9 EC: 1.4.1.20; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1831; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBL-1B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 11 ORGANISM_TAXID: 1831; SOURCE 12 CELL_LINE: BL21; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBL-1B
KEYWDS AMINO ACID DEHYDROGENASE, OXIDATIVE DEAMINATION MECHANISM
EXPDTA X-RAY DIFFRACTION
AUTHOR J.L.VANHOOKE,J.B.THODEN,N.M.W.BRUNHUBER,J.L.BLANCHARD, AUTHOR 2 H.M.HOLDEN
REVDAT 2 24-FEB-09 1BXG 1 VERSN REVDAT 1 18-MAY-99 1BXG 0
JRNL AUTH J.L.VANHOOKE,J.B.THODEN,N.M.BRUNHUBER, JRNL AUTH 2 J.S.BLANCHARD,H.M.HOLDEN JRNL TITL PHENYLALANINE DEHYDROGENASE FROM RHODOCOCCUS SP. JRNL TITL 2 M4: HIGH-RESOLUTION X-RAY ANALYSES OF INHIBITORY JRNL TITL 3 TERNARY COMPLEXES REVEAL KEY FEATURES IN THE JRNL TITL 4 OXIDATIVE DEAMINATION MECHANISM. JRNL REF BIOCHEMISTRY V. 38 2326 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10029526 JRNL DOI 10.1021/BI982244Q
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 5-E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 34077 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1700 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 34077 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5027 REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : NULL REMARK 3 SOLVENT ATOMS : NULL REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; 3.000 ; 8005 REMARK 3 BOND ANGLES (DEGREES) : 2.467 ; 5.000 ; 10580 REMARK 3 TORSION ANGLES (DEGREES) : 15.977; 0.000 ; 5170 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; 10.000; 120 REMARK 3 GENERAL PLANES (A) : 0.008 ; 20.000; 1487 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.070 ; 10.000; 108 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 1.11 REMARK 3 BSOL : 589.80 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1BXG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 270 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : GOBEL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XCALIBRE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.7
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 350 REMARK 465 THR A 351 REMARK 465 THR A 352 REMARK 465 ALA A 353 REMARK 465 THR A 354 REMARK 465 ALA A 355 REMARK 465 MET B 400 REMARK 465 ALA B 748 REMARK 465 SER B 749 REMARK 465 THR B 750 REMARK 465 THR B 751 REMARK 465 THR B 752 REMARK 465 ALA B 753 REMARK 465 THR B 754 REMARK 465 ALA B 755
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 42 O HOH A 362 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 104 CD GLU A 104 OE1 0.071 REMARK 500 GLU A 134 CD GLU A 134 OE1 0.066 REMARK 500 GLU A 142 CD GLU A 142 OE2 0.087 REMARK 500 GLU A 196 CD GLU A 196 OE2 0.097 REMARK 500 GLU A 225 CD GLU A 225 OE1 0.071 REMARK 500 GLU A 268 CD GLU A 268 OE2 0.082 REMARK 500 GLU A 299 CD GLU A 299 OE1 0.069 REMARK 500 GLU A 310 CD GLU A 310 OE2 0.077 REMARK 500 GLU A 335 CD GLU A 335 OE1 0.089 REMARK 500 GLU A 347 CD GLU A 347 OE1 0.074 REMARK 500 GLU B 504 CD GLU B 504 OE1 0.075 REMARK 500 GLU B 559 CD GLU B 559 OE2 0.087 REMARK 500 GLU B 596 CD GLU B 596 OE1 0.069 REMARK 500 GLU B 625 CD GLU B 625 OE1 0.068 REMARK 500 GLU B 668 CD GLU B 668 OE1 0.066 REMARK 500 GLU B 705 CD GLU B 705 OE1 0.072 REMARK 500 GLU B 710 CD GLU B 710 OE1 0.081 REMARK 500 GLU B 724 CD GLU B 724 OE1 0.079 REMARK 500 GLU B 735 CD GLU B 735 OE1 0.080 REMARK 500 GLU B 747 CD GLU B 747 OE1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 21 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 46 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 131 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ALA A 150 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 ALA A 166 CB - CA - C ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 267 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ALA A 287 N - CA - CB ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 317 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 334 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 334 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 409 CB - CG - OD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP B 409 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 416 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 416 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 418 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 430 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 430 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 THR B 441 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASP B 451 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 451 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 THR B 464 CA - CB - CG2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ASP B 491 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 500 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 71 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 12 140.25 -178.35 REMARK 500 SER A 110 51.24 39.74 REMARK 500 ASP A 118 -154.41 -139.70 REMARK 500 SER A 140 161.77 -49.90 REMARK 500 LEU A 183 41.95 -102.92 REMARK 500 ASP A 205 142.50 -178.23 REMARK 500 ALA A 239 -101.36 -123.03 REMARK 500 ASP A 253 79.59 -114.56 REMARK 500 VAL A 300 -66.86 -109.70 REMARK 500 ASN B 407 33.77 -92.09 REMARK 500 ARG B 416 146.88 -170.03 REMARK 500 ASN B 520 12.13 80.55 REMARK 500 PHE B 535 51.22 -69.46 REMARK 500 LEU B 583 48.38 -101.03 REMARK 500 ALA B 639 -124.80 -109.52 REMARK 500 ASP B 653 73.05 -100.51 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 423 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 450 DISTANCE = 6.47 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 850 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 574 O REMARK 620 2 HOH B 111 O 110.1 REMARK 620 3 HOH B 151 O 51.9 99.7 REMARK 620 4 LEU B 570 O 169.3 74.8 137.9 REMARK 620 5 SER B 572 O 90.8 99.1 142.2 78.9 REMARK 620 6 PO4 B 900 O2 132.4 91.2 83.6 55.4 128.5 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 850 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 900 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 360 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCI A 361 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 760 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCI B 761
DBREF 1BXG A 0 355 UNP Q59771 Q59771_RHOSO 1 356 DBREF 1BXG B 400 755 UNP Q59771 Q59771_RHOSO 1 356
SEQADV 1BXG SER A 19 UNP Q59771 ARG 20 SEE REMARK 999 SEQADV 1BXG LYS A 20 UNP Q59771 GLU 21 SEE REMARK 999 SEQADV 1BXG MET B 420 UNP Q59771 GLU 21 SEE REMARK 999
SEQRES 1 A 356 MET SER ILE ASP SER ALA LEU ASN TRP ASP GLY GLU MET SEQRES 2 A 356 THR VAL THR ARG PHE ASP SER LYS THR GLY ALA HIS PHE SEQRES 3 A 356 VAL ILE ARG LEU ASP SER THR GLN LEU GLY PRO ALA ALA SEQRES 4 A 356 GLY GLY THR ARG ALA ALA GLN TYR SER GLN LEU ALA ASP SEQRES 5 A 356 ALA LEU THR ASP ALA GLY LYS LEU ALA GLY ALA MET THR SEQRES 6 A 356 LEU LYS MET ALA VAL SER ASN LEU PRO MET GLY GLY GLY SEQRES 7 A 356 LYS SER VAL ILE ALA LEU PRO ALA PRO ARG HIS SER ILE SEQRES 8 A 356 ASP PRO SER THR TRP ALA ARG ILE LEU ARG ILE HIS ALA SEQRES 9 A 356 GLU ASN ILE ASP LYS LEU SER GLY ASN TYR TRP THR GLY SEQRES 10 A 356 PRO ASP VAL ASN THR ASN SER ALA ASP MET ASP THR LEU SEQRES 11 A 356 ASN ASP THR THR GLU PHE VAL PHE GLY ARG SER LEU GLU SEQRES 12 A 356 ARG GLY GLY ALA GLY SER SER ALA PHE THR THR ALA VAL SEQRES 13 A 356 GLY VAL PHE GLU ALA MET LYS ALA THR VAL ALA HIS ARG SEQRES 14 A 356 GLY LEU GLY SER LEU ASP GLY LEU THR VAL LEU VAL GLN SEQRES 15 A 356 GLY LEU GLY ALA VAL GLY GLY SER LEU ALA SER LEU ALA SEQRES 16 A 356 ALA GLU ALA GLY ALA GLN LEU LEU VAL ALA ASP THR ASP SEQRES 17 A 356 THR GLU ARG VAL ALA HIS ALA VAL ALA LEU GLY HIS THR SEQRES 18 A 356 ALA VAL ALA LEU GLU ASP VAL LEU SER THR PRO CYS ASP SEQRES 19 A 356 VAL PHE ALA PRO CYS ALA MET GLY GLY VAL ILE THR THR SEQRES 20 A 356 GLU VAL ALA ARG THR LEU ASP CYS SER VAL VAL ALA GLY SEQRES 21 A 356 ALA ALA ASN ASN VAL ILE ALA ASP GLU ALA ALA SER ASP SEQRES 22 A 356 ILE LEU HIS ALA ARG GLY ILE LEU TYR ALA PRO ASP PHE SEQRES 23 A 356 VAL ALA ASN ALA GLY GLY ALA ILE HIS LEU VAL GLY ARG SEQRES 24 A 356 GLU VAL LEU GLY TRP SER GLU SER VAL VAL HIS GLU ARG SEQRES 25 A 356 ALA VAL ALA ILE GLY ASP THR LEU ASN GLN VAL PHE GLU SEQRES 26 A 356 ILE SER ASP ASN ASP GLY VAL THR PRO ASP GLU ALA ALA SEQRES 27 A 356 ARG THR LEU ALA GLY ARG ARG ALA ARG GLU ALA SER THR SEQRES 28 A 356 THR THR ALA THR ALA SEQRES 1 B 356 MET SER ILE ASP SER ALA LEU ASN TRP ASP GLY GLU MET SEQRES 2 B 356 THR VAL THR ARG PHE ASP ARG MET THR GLY ALA HIS PHE SEQRES 3 B 356 VAL ILE ARG LEU ASP SER THR GLN LEU GLY PRO ALA ALA SEQRES 4 B 356 GLY GLY THR ARG ALA ALA GLN TYR SER GLN LEU ALA ASP SEQRES 5 B 356 ALA LEU THR ASP ALA GLY LYS LEU ALA GLY ALA MET THR SEQRES 6 B 356 LEU LYS MET ALA VAL SER ASN LEU PRO MET GLY GLY GLY SEQRES 7 B 356 LYS SER VAL ILE ALA LEU PRO ALA PRO ARG HIS SER ILE SEQRES 8 B 356 ASP PRO SER THR TRP ALA ARG ILE LEU ARG ILE HIS ALA SEQRES 9 B 356 GLU ASN ILE ASP LYS LEU SER GLY ASN TYR TRP THR GLY SEQRES 10 B 356 PRO ASP VAL ASN THR ASN SER ALA ASP MET ASP THR LEU SEQRES 11 B 356 ASN ASP THR THR GLU PHE VAL PHE GLY ARG SER LEU GLU SEQRES 12 B 356 ARG GLY GLY ALA GLY SER SER ALA PHE THR THR ALA VAL SEQRES 13 B 356 GLY VAL PHE GLU ALA MET LYS ALA THR VAL ALA HIS ARG SEQRES 14 B 356 GLY LEU GLY SER LEU ASP GLY LEU THR VAL LEU VAL GLN SEQRES 15 B 356 GLY LEU GLY ALA VAL GLY GLY SER LEU ALA SER LEU ALA SEQRES 16 B 356 ALA GLU ALA GLY ALA GLN LEU LEU VAL ALA ASP THR ASP SEQRES 17 B 356 THR GLU ARG VAL ALA HIS ALA VAL ALA LEU GLY HIS THR SEQRES 18 B 356 ALA VAL ALA LEU GLU ASP VAL LEU SER THR PRO CYS ASP SEQRES 19 B 356 VAL PHE ALA PRO CYS ALA MET GLY GLY VAL ILE THR THR SEQRES 20 B 356 GLU VAL ALA ARG THR LEU ASP CYS SER VAL VAL ALA GLY SEQRES 21 B 356 ALA ALA ASN ASN VAL ILE ALA ASP GLU ALA ALA SER ASP SEQRES 22 B 356 ILE LEU HIS ALA ARG GLY ILE LEU TYR ALA PRO ASP PHE SEQRES 23 B 356 VAL ALA ASN ALA GLY GLY ALA ILE HIS LEU VAL GLY ARG SEQRES 24 B 356 GLU VAL LEU GLY TRP SER GLU SER VAL VAL HIS GLU ARG SEQRES 25 B 356 ALA VAL ALA ILE GLY ASP THR LEU ASN GLN VAL PHE GLU SEQRES 26 B 356 ILE SER ASP ASN ASP GLY VAL THR PRO ASP GLU ALA ALA SEQRES 27 B 356 ARG THR LEU ALA GLY ARG ARG ALA ARG GLU ALA SER THR SEQRES 28 B 356 THR THR ALA THR ALA
HET K B 850 1 HET PO4 B 900 5 HET NAD A 360 44 HET HCI A 361 11 HET NAD B 760 44 HET HCI B 761 11
HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM HCI HYDROCINNAMIC ACID
HETSYN HCI 3PP; 3-PHENYLPROPIONIC ACID
FORMUL 3 K K 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 HCI 2(C9 H10 O2) FORMUL 9 HOH *175(H2 O)
HELIX 1 1 ILE A 2 ALA A 5 1 4 HELIX 2 2 LEU A 49 VAL A 69 1 21 HELIX 3 3 ARG A 87 SER A 89 5 3 HELIX 4 4 PRO A 92 LYS A 108 1 17 HELIX 5 5 SER A 123 THR A 132 1 10 HELIX 6 6 ALA A 150 ARG A 168 1 19 HELIX 7 7 ALA A 185 ALA A 197 1 13 HELIX 8 8 THR A 208 LEU A 217 1 10 HELIX 9 9 LEU A 224 SER A 229 5 6 HELIX 10 10 THR A 246 THR A 251 1 6 HELIX 11 11 GLU A 268 ARG A 277 1 10 HELIX 12 12 ASP A 284 ALA A 287 1 4 HELIX 13 13 GLY A 290 GLU A 299 1 10 HELIX 14 14 GLU A 305 ASP A 329 1 25 HELIX 15 15 PRO A 333 GLU A 347 1 15 HELIX 16 16 ILE B 402 LEU B 406 1 5 HELIX 17 17 LEU B 449 VAL B 469 1 21 HELIX 18 18 PRO B 492 LEU B 509 1 18 HELIX 19 19 SER B 523 ASP B 531 1 9 HELIX 20 20 LEU B 541 ARG B 543 5 3 HELIX 21 21 ALA B 550 ARG B 568 1 19 HELIX 22 22 GLY B 587 GLU B 596 1 10 HELIX 23 23 THR B 608 ALA B 616 1 9 HELIX 24 24 THR B 646 ALA B 649 1 4 HELIX 25 25 GLU B 668 ALA B 676 1 9 HELIX 26 26 ASP B 684 ALA B 687 1 4 HELIX 27 27 GLY B 690 VAL B 700 1 11 HELIX 28 28 GLU B 705 ASP B 729 1 25 HELIX 29 29 PRO B 733 ARG B 744 1 12
SHEET 1 A 5 MET A 12 ASP A 18 0 SHEET 2 A 5 ALA A 23 SER A 31 -1 N LEU A 29 O MET A 12 SHEET 3 A 5 GLY A 76 LEU A 83 -1 N ALA A 82 O HIS A 24 SHEET 4 A 5 ALA A 37 GLN A 45 1 N ARG A 42 O SER A 79 SHEET 5 A 5 TYR A 113 PRO A 117 1 N TRP A 114 O ALA A 37 SHEET 1 B 3 GLN A 200 ALA A 204 0 SHEET 2 B 3 THR A 177 GLN A 181 1 N VAL A 178 O GLN A 200 SHEET 3 B 3 VAL A 234 PRO A 237 1 N VAL A 234 O LEU A 179 SHEET 1 C 5 MET B 412 ASP B 418 0 SHEET 2 C 5 ALA B 423 SER B 431 -1 N LEU B 429 O MET B 412 SHEET 3 C 5 GLY B 476 ALA B 482 -1 N ALA B 482 O HIS B 424 SHEET 4 C 5 ALA B 437 ALA B 444 1 N ARG B 442 O SER B 479 SHEET 5 C 5 TYR B 513 PRO B 517 1 N TRP B 514 O ALA B 437 SHEET 1 D 3 GLN B 600 ALA B 604 0 SHEET 2 D 3 THR B 577 GLN B 581 1 N VAL B 578 O GLN B 600 SHEET 3 D 3 VAL B 634 PRO B 637 1 N VAL B 634 O LEU B 579
LINK O3B NAD B 760 OD2 ASP B 605 1555 1555 2.31 LINK O2B NAD B 760 OD1 ASP B 605 1555 1555 2.17 LINK K K B 850 O ASP B 574 1555 1555 2.54 LINK K K B 850 O HOH B 111 1555 1555 2.99 LINK K K B 850 O HOH B 151 1555 1555 2.96 LINK K K B 850 O LEU B 570 1555 1555 3.12 LINK K K B 850 O SER B 572 1555 1555 2.55 LINK K K B 850 O2 PO4 B 900 1555 4455 2.84
SITE 1 AC1 7 HOH B 111 HOH B 151 LEU B 570 SER B 572 SITE 2 AC1 7 ASP B 574 LEU B 576 PO4 B 900 SITE 1 AC2 5 SER B 401 SER B 404 LYS B 458 LEU B 570 SITE 2 AC2 5 K B 850 SITE 1 AC3 17 SER A 149 THR A 153 GLY A 182 GLY A 184 SITE 2 AC3 17 ALA A 185 VAL A 186 ASP A 205 THR A 206 SITE 3 AC3 17 CYS A 238 ALA A 239 MET A 240 ALA A 260 SITE 4 AC3 17 ALA A 261 ASN A 288 HCI A 361 HOH A 401 SITE 5 AC3 17 HOH A 426 SITE 1 AC4 7 GLY A 39 GLY A 40 LYS A 66 LYS A 78 SITE 2 AC4 7 GLY A 116 ASN A 262 NAD A 360 SITE 1 AC5 22 HOH B 4 HOH B 36 ARG B 442 SER B 549 SITE 2 AC5 22 THR B 553 GLY B 582 LEU B 583 GLY B 584 SITE 3 AC5 22 ALA B 585 VAL B 586 ALA B 604 ASP B 605 SITE 4 AC5 22 THR B 606 ARG B 610 LEU B 624 CYS B 638 SITE 5 AC5 22 ALA B 639 ALA B 660 ALA B 661 ASN B 662 SITE 6 AC5 22 ASN B 688 HCI B 761 SITE 1 AC6 9 HOH B 27 HOH B 36 GLY B 439 GLY B 440 SITE 2 AC6 9 LYS B 466 LYS B 478 GLY B 516 ASN B 662 SITE 3 AC6 9 NAD B 760
CRYST1 65.510 116.960 111.550 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015265 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008550 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008965 0.00000