10 20 30 40 50 60 70 80 1BWU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 28-SEP-98 1BWU
TITLE MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) TITLE 2 BULBS COMPLEXED WITH ALPHA-D-MANNOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (AGGLUTININ); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GARLIC LECTIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (AGGLUTININ); COMPND 7 CHAIN: D; COMPND 8 SYNONYM: GARLIC LECTIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (AGGLUTININ); COMPND 11 CHAIN: P; COMPND 12 SYNONYM: GARLIC LECTIN; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: PROTEIN (AGGLUTININ); COMPND 15 CHAIN: Q; COMPND 16 SYNONYM: GARLIC LECTIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 3 ORGANISM_COMMON: GARLIC; SOURCE 4 ORGANISM_TAXID: 4682; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 7 ORGANISM_COMMON: GARLIC; SOURCE 8 ORGANISM_TAXID: 4682; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 11 ORGANISM_COMMON: GARLIC; SOURCE 12 ORGANISM_TAXID: 4682; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 15 ORGANISM_COMMON: GARLIC; SOURCE 16 ORGANISM_TAXID: 4682
KEYWDS BULB LECTIN, MANNOSE, PLANT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR N.R.CHANDRA,G.RAMACHANDRAIAH,K.BACHHAWAT,T.K.DAM,A.SUROLIA,M.VIJAYAN
REVDAT 4 13-JUL-11 1BWU 1 VERSN REVDAT 3 24-FEB-09 1BWU 1 VERSN REVDAT 2 29-DEC-99 1BWU 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 20-JAN-99 1BWU 0
JRNL AUTH N.R.CHANDRA,G.RAMACHANDRAIAH,K.BACHHAWAT,T.K.DAM,A.SUROLIA, JRNL AUTH 2 M.VIJAYAN JRNL TITL CRYSTAL STRUCTURE OF A DIMERIC MANNOSE-SPECIFIC AGGLUTININ JRNL TITL 2 FROM GARLIC: QUATERNARY ASSOCIATION AND CARBOHYDRATE JRNL TITL 3 SPECIFICITY. JRNL REF J.MOL.BIOL. V. 285 1157 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9887270 JRNL DOI 10.1006/JMBI.1998.2353
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.R.CHANDRA,T.K.DAM,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDIES ON REMARK 1 TITL 2 THE MANNOSE- SPECIFIC LECTIN FROM GARLIC REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 53 787 1997 REMARK 1 REFN ISSN 0907-4449
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 58.7 REMARK 3 NUMBER OF REFLECTIONS : 10693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 451 REMARK 3 BIN R VALUE (WORKING SET) : 0.4260 REMARK 3 BIN FREE R VALUE : 0.5340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.099 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 168 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.20 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : PARAM11.WAT REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1BWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB008244.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MARXDS REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 9.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : 2.310 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SNOWDROP LECTIN (PDB ENTRY 1MSA) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 5.5 MG/ML PROTEIN, 10MM REMARK 280 MANNOSE, 20MM PBS PH 7.0, 1 WEEK, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.62150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.62150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SUBUNITS, CHAINS A AND D AND CHAINS P AND Q, FORM 2 REMARK 300 INDEPENDENT HETERO-DIMERS IN THE ASYMMETRIC UNIT
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 29 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -5.10 -171.05 REMARK 500 ASP A 7 36.48 70.20 REMARK 500 VAL A 18 95.19 -171.84 REMARK 500 ASN A 19 -170.37 65.46 REMARK 500 PRO A 20 74.41 -68.07 REMARK 500 HIS A 36 -123.65 62.23 REMARK 500 VAL A 40 -42.89 -135.02 REMARK 500 GLU A 69 -77.85 -83.32 REMARK 500 SER A 100 175.52 39.79 REMARK 500 ASN D 2 23.71 -153.93 REMARK 500 ASN D 6 -92.91 49.42 REMARK 500 ASN D 19 -143.15 57.47 REMARK 500 CYS D 29 34.62 -63.74 REMARK 500 ASP D 35 52.65 -113.25 REMARK 500 HIS D 36 -43.52 91.53 REMARK 500 SER D 37 -21.90 -147.54 REMARK 500 ASN D 44 78.10 73.80 REMARK 500 THR D 45 44.32 -155.78 REMARK 500 ASP D 46 41.07 -81.26 REMARK 500 ALA D 68 95.42 -64.39 REMARK 500 ALA D 71 -161.50 -122.41 REMARK 500 SER D 72 99.34 -65.88 REMARK 500 SER D 78 47.94 -82.83 REMARK 500 SER D 100 146.06 19.08 REMARK 500 THR D 107 40.91 -90.50 REMARK 500 ASN P 2 -33.50 -177.63 REMARK 500 ASN P 19 -157.31 65.81 REMARK 500 CYS P 29 80.28 -61.75 REMARK 500 HIS P 36 -88.59 69.05 REMARK 500 GLU P 69 45.25 -90.98 REMARK 500 VAL P 79 78.75 13.21 REMARK 500 ARG P 80 41.59 -102.62 REMARK 500 SER P 100 116.65 74.11 REMARK 500 ASN Q 2 -25.63 -166.34 REMARK 500 ASP Q 7 2.96 93.98 REMARK 500 ALA Q 12 75.21 -56.87 REMARK 500 VAL Q 18 51.54 -119.71 REMARK 500 ASN Q 19 -90.62 58.75 REMARK 500 GLN Q 26 172.82 -53.73 REMARK 500 HIS Q 36 -76.84 63.24 REMARK 500 SER Q 37 35.60 -158.01 REMARK 500 ASN Q 44 35.90 73.06 REMARK 500 ASP Q 46 50.06 -101.80 REMARK 500 ASP Q 67 -136.28 -123.38 REMARK 500 ALA Q 68 97.20 -66.35 REMARK 500 GLU Q 69 86.48 64.26 REMARK 500 ALA Q 71 95.54 58.11 REMARK 500 ALA Q 75 80.76 -175.39 REMARK 500 SER Q 76 -49.96 -2.22 REMARK 500 HIS Q 77 17.36 91.67 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER D 100 23.2 L L OUTSIDE RANGE REMARK 500 ASN Q 19 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 125 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 136 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 141 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH D 152 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH D 169 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH D 170 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH D 173 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH Q 229 DISTANCE = 5.04 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 313
DBREF 1BWU A 1 106 UNP Q38789 Q38789_ALLSA 177 282 DBREF 1BWU D 1 109 UNP Q38784 Q38784_ALLSA 25 133 DBREF 1BWU P 1 106 UNP Q38789 Q38789_ALLSA 18 123 DBREF 1BWU Q 1 109 UNP Q38784 Q38784_ALLSA 25 133
SEQADV 1BWU GLY A 12 UNP Q38789 ALA 188 CONFLICT SEQADV 1BWU ASN A 19 UNP Q38789 GLU 195 CONFLICT SEQADV 1BWU SER A 39 UNP Q38789 ALA 215 CONFLICT SEQADV 1BWU GLY A 46 UNP Q38789 ASP 222 CONFLICT SEQADV 1BWU LEU A 48 UNP Q38789 PRO 224 CONFLICT SEQADV 1BWU ARG A 54 UNP Q38789 LYS 230 CONFLICT SEQADV 1BWU ARG A 99 UNP Q38789 GLY 275 CONFLICT SEQADV 1BWU ASN A 106 UNP Q38789 ASP 282 CONFLICT SEQADV 1BWU THR D 5 UNP Q38784 MET 29 CONFLICT SEQADV 1BWU GLY D 12 UNP Q38784 ALA 36 CONFLICT SEQADV 1BWU ASN D 19 UNP Q38784 GLU 43 CONFLICT SEQADV 1BWU SER D 42 UNP Q38784 THR 66 CONFLICT SEQADV 1BWU ALA D 71 UNP Q38784 ARG 95 CONFLICT SEQADV 1BWU ARG D 99 UNP Q38784 GLY 123 CONFLICT SEQADV 1BWU ARG D 109 UNP Q38784 LYS 133 CONFLICT SEQADV 1BWU THR P 5 UNP Q38789 MET 22 CONFLICT SEQADV 1BWU ASN P 19 UNP Q38789 GLU 36 CONFLICT SEQADV 1BWU PHE P 23 UNP Q38789 LEU 40 CONFLICT SEQADV 1BWU SER P 39 UNP Q38789 ALA 56 CONFLICT SEQADV 1BWU GLY P 46 UNP Q38789 ASP 63 CONFLICT SEQADV 1BWU LEU P 48 UNP Q38789 PRO 65 CONFLICT SEQADV 1BWU ALA P 59 UNP Q38789 SER 76 CONFLICT SEQADV 1BWU THR Q 5 UNP Q38784 MET 29 CONFLICT SEQADV 1BWU ASN Q 19 UNP Q38784 GLU 43 CONFLICT SEQADV 1BWU SER Q 42 UNP Q38784 THR 66 CONFLICT SEQADV 1BWU ALA Q 71 UNP Q38784 ARG 95 CONFLICT
SEQRES 1 A 106 ARG ASN ILE LEU ARG ASN ASP GLU GLY LEU TYR GLY GLY SEQRES 2 A 106 GLN SER LEU ASP VAL ASN PRO TYR HIS PHE ILE MET GLN SEQRES 3 A 106 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 A 106 VAL TRP ALA SER ASN THR GLY ILE LEU GLY LYS LYS GLY SEQRES 5 A 106 CYS ARG ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 A 106 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 A 106 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 A 106 ASP GLY ASN VAL VAL ILE TYR ARG SER ASP ILE TRP SER SEQRES 9 A 106 THR ASN SEQRES 1 D 109 ARG ASN ILE LEU THR ASN ASP GLU GLY LEU TYR GLY GLY SEQRES 2 D 109 GLN SER LEU ASP VAL ASN PRO TYR HIS LEU ILE MET GLN SEQRES 3 D 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR ALA SEQRES 4 D 109 VAL TRP SER SER ASN THR ASP ILE PRO GLY LYS LYS GLY SEQRES 5 D 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 D 109 TYR ASP ALA GLU GLY ALA SER LEU TRP ALA SER HIS SER SEQRES 7 D 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 D 109 ASP GLY ASN VAL VAL ILE TYR ARG SER ASP ILE TRP SER SEQRES 9 D 109 THR ASN THR TYR ARG SEQRES 1 P 106 ARG ASN ILE LEU THR ASN ASP GLU GLY LEU TYR ALA GLY SEQRES 2 P 106 GLN SER LEU ASP VAL ASN PRO TYR HIS PHE ILE MET GLN SEQRES 3 P 106 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 P 106 VAL TRP ALA SER ASN THR GLY ILE LEU GLY LYS LYS GLY SEQRES 5 P 106 CYS LYS ALA VAL LEU GLN ALA ASP GLY ASN PHE VAL VAL SEQRES 6 P 106 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 P 106 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 P 106 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 P 106 THR ASN SEQRES 1 Q 109 ARG ASN ILE LEU THR ASN ASP GLU GLY LEU TYR ALA GLY SEQRES 2 Q 109 GLN SER LEU ASP VAL ASN PRO TYR HIS LEU ILE MET GLN SEQRES 3 Q 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR ALA SEQRES 4 Q 109 VAL TRP SER SER ASN THR ASP ILE PRO GLY LYS LYS GLY SEQRES 5 Q 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 Q 109 TYR ASP ALA GLU GLY ALA SER LEU TRP ALA SER HIS SER SEQRES 7 Q 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 Q 109 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 Q 109 THR ASN THR TYR LYS
HET MAN D 300 12 HET MAN A 301 12 HET MAN A 302 12 HET MAN A 303 12 HET MAN D 304 12 HET MAN D 305 12 HET MAN D 306 12 HET MAN P 307 12 HET MAN P 308 12 HET MAN P 309 12 HET MAN Q 310 12 HET MAN Q 311 12 HET MAN Q 312 12 HET MAN Q 313 12
HETNAM MAN ALPHA-D-MANNOSE
FORMUL 5 MAN 14(C6 H12 O6) FORMUL 19 HOH *137(H2 O)
SHEET 1 A 3 ILE A 3 ARG A 5 0 SHEET 2 A 3 VAL A 86 GLN A 90 -1 N LEU A 87 O LEU A 4 SHEET 3 A 3 ASN A 94 ILE A 97 -1 N VAL A 96 O VAL A 88 SHEET 1 B 4 GLY A 9 TYR A 11 0 SHEET 2 B 4 ARG A 54 LEU A 57 -1 N ALA A 55 O LEU A 10 SHEET 3 B 4 PHE A 63 TYR A 66 -1 N TYR A 66 O ARG A 54 SHEET 4 B 4 SER A 72 ALA A 75 -1 N TRP A 74 O VAL A 65 SHEET 1 C 4 SER A 15 ASP A 17 0 SHEET 2 C 4 HIS A 22 MET A 25 -1 N PHE A 23 O LEU A 16 SHEET 3 C 4 LEU A 31 ASP A 35 -1 N TYR A 34 O HIS A 22 SHEET 4 C 4 THR A 38 ALA A 42 -1 N TRP A 41 O LEU A 33 SHEET 1 D 3 ILE D 3 THR D 5 0 SHEET 2 D 3 VAL D 86 LEU D 89 -1 N LEU D 87 O LEU D 4 SHEET 3 D 3 VAL D 95 ILE D 97 -1 N VAL D 96 O VAL D 88 SHEET 1 E 4 SER D 15 VAL D 18 0 SHEET 2 E 4 TYR D 21 MET D 25 -1 N LEU D 23 O LEU D 16 SHEET 3 E 4 LEU D 31 ASP D 35 -1 N TYR D 34 O HIS D 22 SHEET 4 E 4 ALA D 39 SER D 42 -1 N TRP D 41 O LEU D 33 SHEET 1 F 3 LYS D 54 LEU D 57 0 SHEET 2 F 3 PHE D 63 TYR D 66 -1 N TYR D 66 O LYS D 54 SHEET 3 F 3 SER D 72 ALA D 75 -1 N TRP D 74 O VAL D 65 SHEET 1 G 3 ILE P 3 THR P 5 0 SHEET 2 G 3 TYR P 85 LEU P 89 -1 N LEU P 87 O LEU P 4 SHEET 3 G 3 VAL P 95 GLY P 99 -1 N TYR P 98 O VAL P 86 SHEET 1 H 4 GLY P 9 TYR P 11 0 SHEET 2 H 4 LYS P 54 LEU P 57 -1 N ALA P 55 O LEU P 10 SHEET 3 H 4 PHE P 63 TYR P 66 -1 N TYR P 66 O LYS P 54 SHEET 4 H 4 SER P 72 ALA P 75 -1 N TRP P 74 O VAL P 65 SHEET 1 I 4 SER P 15 VAL P 18 0 SHEET 2 I 4 TYR P 21 MET P 25 -1 N PHE P 23 O LEU P 16 SHEET 3 I 4 LEU P 31 ASP P 35 -1 N TYR P 34 O HIS P 22 SHEET 4 I 4 THR P 38 ALA P 42 -1 N TRP P 41 O LEU P 33 SHEET 1 J 3 ILE Q 3 THR Q 5 0 SHEET 2 J 3 TYR Q 85 LEU Q 89 -1 N LEU Q 87 O LEU Q 4 SHEET 3 J 3 VAL Q 95 GLY Q 99 -1 N TYR Q 98 O VAL Q 86 SHEET 1 K 4 SER Q 15 VAL Q 18 0 SHEET 2 K 4 TYR Q 21 MET Q 25 -1 N LEU Q 23 O LEU Q 16 SHEET 3 K 4 LEU Q 31 ASP Q 35 -1 N TYR Q 34 O HIS Q 22 SHEET 4 K 4 THR Q 38 SER Q 42 -1 N TRP Q 41 O LEU Q 33 SHEET 1 L 2 LYS Q 54 LEU Q 57 0 SHEET 2 L 2 PHE Q 63 TYR Q 66 -1 N TYR Q 66 O LYS Q 54
SSBOND 1 CYS A 29 CYS A 53 1555 1555 2.04 SSBOND 2 CYS D 29 CYS D 53 1555 1555 2.06 SSBOND 3 CYS P 29 CYS P 53 1555 1555 2.05 SSBOND 4 CYS Q 29 CYS Q 53 1555 1555 2.04
SITE 1 AC1 8 GLN A 90 ASP A 92 ASN A 94 TYR A 98 SITE 2 AC1 8 ASN D 84 ASP D 101 TYR D 108 HOH D 133 SITE 1 AC2 7 GLN A 58 ASP A 60 ASN A 62 TYR A 66 SITE 2 AC2 7 SER A 72 HIS A 77 HOH A 134 SITE 1 AC3 7 GLN A 26 ASP A 28 ASN A 30 TYR A 34 SITE 2 AC3 7 SER A 39 ASN A 44 ARG D 109 SITE 1 AC4 8 TYR A 21 ASP A 35 THR A 38 SER A 39 SITE 2 AC4 8 VAL A 40 GLY A 93 THR D 107 ARG D 109 SITE 1 AC5 8 ASN A 84 ASP A 101 SER A 104 GLN D 90 SITE 2 AC5 8 ASP D 92 ASN D 94 VAL D 96 TYR D 98 SITE 1 AC6 5 ASP D 60 ASN D 62 TYR D 66 SER D 72 SITE 2 AC6 5 HOH D 157 SITE 1 AC7 9 GLN D 26 ASP D 28 ASN D 30 TYR D 34 SITE 2 AC7 9 ASP D 46 HOH D 166 HOH D 175 ILE P 47 SITE 3 AC7 9 LYS P 50 SITE 1 AC8 6 GLN P 90 ASP P 92 ASN P 94 TYR P 98 SITE 2 AC8 6 ASN Q 84 SER Q 104 SITE 1 AC9 6 GLN P 58 ASP P 60 ASN P 62 TYR P 66 SITE 2 AC9 6 ALA P 75 HIS P 77 SITE 1 BC1 8 GLN P 26 ASP P 28 ASN P 30 TYR P 34 SITE 2 BC1 8 SER P 39 HOH P 200 HOH P 201 HOH P 209 SITE 1 BC2 12 TYR P 21 LEU P 33 ASP P 35 VAL P 40 SITE 2 BC2 12 GLY P 93 TYR Q 11 ALA Q 12 GLY Q 13 SITE 3 BC2 12 GLN Q 14 THR Q 107 TYR Q 108 LYS Q 109 SITE 1 BC3 6 ASN P 84 SER P 104 GLN Q 90 ASP Q 92 SITE 2 BC3 6 ASN Q 94 TYR Q 98 SITE 1 BC4 6 GLN Q 58 ASP Q 60 ASN Q 62 ALA Q 75 SITE 2 BC4 6 HOH Q 235 HOH Q 244 SITE 1 BC5 8 ILE A 47 LYS A 50 GLN Q 26 ASP Q 28 SITE 2 BC5 8 ASN Q 30 TYR Q 34 ALA Q 39 ASP Q 46
CRYST1 203.243 43.780 79.268 90.00 112.37 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004920 0.000000 0.002025 0.00000
SCALE2 0.000000 0.022841 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013642 0.00000