10 20 30 40 50 60 70 80 1BW9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER AMINO ACID DEHYDROGENASE 01-OCT-98 1BW9
TITLE PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX TITLE 2 WITH NAD+ AND PHENYLPYRUVATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHENYLALANINE DEHYDROGENASE; COMPND 8 CHAIN: B; COMPND 9 EC: 1.4.1.20; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1831; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBL-1B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 11 ORGANISM_TAXID: 1831; SOURCE 12 CELL_LINE: BL21; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBL-1B
KEYWDS AMINO ACID DEHYDROGENASE, OXIDATIVE DEAMINATION MECHANISM
EXPDTA X-RAY DIFFRACTION
AUTHOR J.L.VANHOOKE,J.B.THODEN,N.M.W.BRUNHUBER,J.L.BLANCHARD, AUTHOR 2 H.M.HOLDEN
REVDAT 2 24-FEB-09 1BW9 1 VERSN REVDAT 1 18-MAY-99 1BW9 0
JRNL AUTH J.L.VANHOOKE,J.B.THODEN,N.M.BRUNHUBER, JRNL AUTH 2 J.S.BLANCHARD,H.M.HOLDEN JRNL TITL PHENYLALANINE DEHYDROGENASE FROM RHODOCOCCUS SP. JRNL TITL 2 M4: HIGH-RESOLUTION X-RAY ANALYSES OF INHIBITORY JRNL TITL 3 TERNARY COMPLEXES REVEAL KEY FEATURES IN THE JRNL TITL 4 OXIDATIVE DEAMINATION MECHANISM. JRNL REF BIOCHEMISTRY V. 38 2326 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10029526 JRNL DOI 10.1021/BI982244Q
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 5-E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 121716 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1950 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 121716 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5073 REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : NULL REMARK 3 SOLVENT ATOMS : NULL REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; 1.700 ; 5277 REMARK 3 BOND ANGLES (DEGREES) : 2.350 ; 3.000 ; 7163 REMARK 3 TORSION ANGLES (DEGREES) : 14.825; 0.000 ; 3110 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.005 ; 12.000; 124 REMARK 3 GENERAL PLANES (A) : 0.012 ; 13.000; 793 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.030 ; NULL ; 82 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 1.06 REMARK 3 BSOL : 433.90 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1BW9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT 2000 REMARK 200 DATA SCALING SOFTWARE : XCALIBRE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.7
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 351 REMARK 465 THR A 352 REMARK 465 ALA A 353 REMARK 465 THR A 354 REMARK 465 ALA A 355 REMARK 465 MET B 400 REMARK 465 ALA B 748 REMARK 465 SER B 749 REMARK 465 THR B 750 REMARK 465 THR B 751 REMARK 465 THR B 752 REMARK 465 ALA B 753 REMARK 465 THR B 754 REMARK 465 ALA B 755
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 104 CD GLU A 104 OE1 0.077 REMARK 500 GLU A 142 CD GLU A 142 OE2 0.068 REMARK 500 GLU A 247 CD GLU A 247 OE1 0.087 REMARK 500 GLU A 347 CD GLU A 347 OE1 0.068 REMARK 500 GLU B 504 CD GLU B 504 OE1 0.073 REMARK 500 GLU B 625 CD GLU B 625 OE1 0.075 REMARK 500 GLU B 647 CD GLU B 647 OE1 0.073 REMARK 500 GLU B 705 CD GLU B 705 OE1 0.072 REMARK 500 GLU B 710 CD GLU B 710 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 PHE A 158 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 418 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 418 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 430 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 430 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 455 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 455 CB - CG - OD1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP B 455 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 455 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 500 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 525 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 605 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 633 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR B 681 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 711 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 734 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 110 55.91 39.68 REMARK 500 LEU A 183 45.64 -104.21 REMARK 500 ALA A 239 -122.03 -117.93 REMARK 500 ASP A 253 73.32 -106.81 REMARK 500 ASN B 407 37.90 -99.31 REMARK 500 SER B 510 52.39 36.33 REMARK 500 ASP B 518 -157.37 -158.58 REMARK 500 ALA B 639 -121.55 -118.49 REMARK 500 ASP B 653 74.30 -114.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 382 DISTANCE = 22.11 ANGSTROMS REMARK 525 HOH B1024 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B1164 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1179 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 675 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH B1347 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1359 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B1368 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B1369 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 859 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1379 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH B1380 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 6.11 ANGSTROMS
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD B 760
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 851 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1319 O REMARK 620 2 ASP B 409 O 98.8 REMARK 620 3 HOH B1100 O 91.7 73.4 REMARK 620 4 HOH B1227 O 107.4 77.5 147.2 REMARK 620 5 HOH A 371 O 175.9 79.3 84.3 75.9 REMARK 620 6 HOH A 436 O 101.8 154.0 90.3 110.7 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 850 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 O REMARK 620 2 THR A 121 O 66.4 REMARK 620 3 HOH B 884 O 109.8 122.1 REMARK 620 4 HOH A 656 O 78.1 133.4 97.4 REMARK 620 5 HOH A 728 O 90.9 65.5 159.3 86.6 REMARK 620 6 HOH A 771 O 155.1 133.9 73.7 76.9 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 853 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 572 O REMARK 620 2 ASP B 574 O 85.3 REMARK 620 3 HOH B 993 O 87.8 105.1 REMARK 620 4 HOH B1140 O 154.0 77.6 115.4 REMARK 620 5 LEU B 570 O 76.6 161.9 74.5 119.4 REMARK 620 6 PO4 B 880 O2 120.3 143.0 102.4 68.4 51.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 852 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 600 NE2 REMARK 620 2 GLY B 618 O 172.9 REMARK 620 3 HOH B1008 O 91.8 94.3 REMARK 620 4 HOH B1326 O 103.6 72.8 89.3 REMARK 620 5 HOH B1083 O 86.4 98.0 82.7 167.4 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 850 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 851 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 852 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 853 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 880 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 360 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPY A 361 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 760 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPY B 761 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 871 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 873 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 874 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 860 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 861 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 862 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 863
DBREF 1BW9 A 0 355 UNP Q59771 Q59771_RHOSO 1 356 DBREF 1BW9 B 400 755 UNP Q59771 Q59771_RHOSO 1 356
SEQADV 1BW9 SER A 19 UNP Q59771 ARG 20 SEE REMARK 999 SEQADV 1BW9 MET A 20 UNP Q59771 GLU 21 SEE REMARK 999 SEQADV 1BW9 ASN A 48 UNP Q59771 GLN 49 SEE REMARK 999 SEQADV 1BW9 LYS B 419 UNP Q59771 ARG 20 SEE REMARK 999 SEQADV 1BW9 MET B 420 UNP Q59771 GLU 21 SEE REMARK 999
SEQRES 1 A 356 MET SER ILE ASP SER ALA LEU ASN TRP ASP GLY GLU MET SEQRES 2 A 356 THR VAL THR ARG PHE ASP SER MET THR GLY ALA HIS PHE SEQRES 3 A 356 VAL ILE ARG LEU ASP SER THR GLN LEU GLY PRO ALA ALA SEQRES 4 A 356 GLY GLY THR ARG ALA ALA GLN TYR SER ASN LEU ALA ASP SEQRES 5 A 356 ALA LEU THR ASP ALA GLY LYS LEU ALA GLY ALA MET THR SEQRES 6 A 356 LEU LYS MET ALA VAL SER ASN LEU PRO MET GLY GLY GLY SEQRES 7 A 356 LYS SER VAL ILE ALA LEU PRO ALA PRO ARG HIS SER ILE SEQRES 8 A 356 ASP PRO SER THR TRP ALA ARG ILE LEU ARG ILE HIS ALA SEQRES 9 A 356 GLU ASN ILE ASP LYS LEU SER GLY ASN TYR TRP THR GLY SEQRES 10 A 356 PRO ASP VAL ASN THR ASN SER ALA ASP MET ASP THR LEU SEQRES 11 A 356 ASN ASP THR THR GLU PHE VAL PHE GLY ARG SER LEU GLU SEQRES 12 A 356 ARG GLY GLY ALA GLY SER SER ALA PHE THR THR ALA VAL SEQRES 13 A 356 GLY VAL PHE GLU ALA MET LYS ALA THR VAL ALA HIS ARG SEQRES 14 A 356 GLY LEU GLY SER LEU ASP GLY LEU THR VAL LEU VAL GLN SEQRES 15 A 356 GLY LEU GLY ALA VAL GLY GLY SER LEU ALA SER LEU ALA SEQRES 16 A 356 ALA GLU ALA GLY ALA GLN LEU LEU VAL ALA ASP THR ASP SEQRES 17 A 356 THR GLU ARG VAL ALA HIS ALA VAL ALA LEU GLY HIS THR SEQRES 18 A 356 ALA VAL ALA LEU GLU ASP VAL LEU SER THR PRO CYS ASP SEQRES 19 A 356 VAL PHE ALA PRO CYS ALA MET GLY GLY VAL ILE THR THR SEQRES 20 A 356 GLU VAL ALA ARG THR LEU ASP CYS SER VAL VAL ALA GLY SEQRES 21 A 356 ALA ALA ASN ASN VAL ILE ALA ASP GLU ALA ALA SER ASP SEQRES 22 A 356 ILE LEU HIS ALA ARG GLY ILE LEU TYR ALA PRO ASP PHE SEQRES 23 A 356 VAL ALA ASN ALA GLY GLY ALA ILE HIS LEU VAL GLY ARG SEQRES 24 A 356 GLU VAL LEU GLY TRP SER GLU SER VAL VAL HIS GLU ARG SEQRES 25 A 356 ALA VAL ALA ILE GLY ASP THR LEU ASN GLN VAL PHE GLU SEQRES 26 A 356 ILE SER ASP ASN ASP GLY VAL THR PRO ASP GLU ALA ALA SEQRES 27 A 356 ARG THR LEU ALA GLY ARG ARG ALA ARG GLU ALA SER THR SEQRES 28 A 356 THR THR ALA THR ALA SEQRES 1 B 356 MET SER ILE ASP SER ALA LEU ASN TRP ASP GLY GLU MET SEQRES 2 B 356 THR VAL THR ARG PHE ASP LYS MET THR GLY ALA HIS PHE SEQRES 3 B 356 VAL ILE ARG LEU ASP SER THR GLN LEU GLY PRO ALA ALA SEQRES 4 B 356 GLY GLY THR ARG ALA ALA GLN TYR SER GLN LEU ALA ASP SEQRES 5 B 356 ALA LEU THR ASP ALA GLY LYS LEU ALA GLY ALA MET THR SEQRES 6 B 356 LEU LYS MET ALA VAL SER ASN LEU PRO MET GLY GLY GLY SEQRES 7 B 356 LYS SER VAL ILE ALA LEU PRO ALA PRO ARG HIS SER ILE SEQRES 8 B 356 ASP PRO SER THR TRP ALA ARG ILE LEU ARG ILE HIS ALA SEQRES 9 B 356 GLU ASN ILE ASP LYS LEU SER GLY ASN TYR TRP THR GLY SEQRES 10 B 356 PRO ASP VAL ASN THR ASN SER ALA ASP MET ASP THR LEU SEQRES 11 B 356 ASN ASP THR THR GLU PHE VAL PHE GLY ARG SER LEU GLU SEQRES 12 B 356 ARG GLY GLY ALA GLY SER SER ALA PHE THR THR ALA VAL SEQRES 13 B 356 GLY VAL PHE GLU ALA MET LYS ALA THR VAL ALA HIS ARG SEQRES 14 B 356 GLY LEU GLY SER LEU ASP GLY LEU THR VAL LEU VAL GLN SEQRES 15 B 356 GLY LEU GLY ALA VAL GLY GLY SER LEU ALA SER LEU ALA SEQRES 16 B 356 ALA GLU ALA GLY ALA GLN LEU LEU VAL ALA ASP THR ASP SEQRES 17 B 356 THR GLU ARG VAL ALA HIS ALA VAL ALA LEU GLY HIS THR SEQRES 18 B 356 ALA VAL ALA LEU GLU ASP VAL LEU SER THR PRO CYS ASP SEQRES 19 B 356 VAL PHE ALA PRO CYS ALA MET GLY GLY VAL ILE THR THR SEQRES 20 B 356 GLU VAL ALA ARG THR LEU ASP CYS SER VAL VAL ALA GLY SEQRES 21 B 356 ALA ALA ASN ASN VAL ILE ALA ASP GLU ALA ALA SER ASP SEQRES 22 B 356 ILE LEU HIS ALA ARG GLY ILE LEU TYR ALA PRO ASP PHE SEQRES 23 B 356 VAL ALA ASN ALA GLY GLY ALA ILE HIS LEU VAL GLY ARG SEQRES 24 B 356 GLU VAL LEU GLY TRP SER GLU SER VAL VAL HIS GLU ARG SEQRES 25 B 356 ALA VAL ALA ILE GLY ASP THR LEU ASN GLN VAL PHE GLU SEQRES 26 B 356 ILE SER ASP ASN ASP GLY VAL THR PRO ASP GLU ALA ALA SEQRES 27 B 356 ARG THR LEU ALA GLY ARG ARG ALA ARG GLU ALA SER THR SEQRES 28 B 356 THR THR ALA THR ALA
HET K B 850 1 HET NA B 851 1 HET NA B 852 1 HET K B 853 1 HET PO4 B 880 5 HET NAD A 360 44 HET PPY A 361 12 HET NAD B 760 27 HET PPY B 761 12 HET EDO B 871 4 HET EDO B 873 4 HET EDO B 874 4 HET IPA B 860 4 HET IPA B 861 4 HET IPA B 862 4 HET IPA B 863 4
HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PPY 3-PHENYLPYRUVIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM IPA ISOPROPYL ALCOHOL
HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL
FORMUL 3 K 2(K 1+) FORMUL 4 NA 2(NA 1+) FORMUL 7 PO4 O4 P 3- FORMUL 8 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 PPY 2(C9 H8 O3) FORMUL 12 EDO 3(C2 H6 O2) FORMUL 15 IPA 4(C3 H8 O) FORMUL 19 HOH *1021(H2 O)
HELIX 1 1 ILE A 2 LEU A 6 1 5 HELIX 2 2 LEU A 49 VAL A 69 1 21 HELIX 3 3 PRO A 92 LEU A 109 1 18 HELIX 4 4 SER A 123 THR A 132 1 10 HELIX 5 5 ALA A 150 HIS A 167 1 18 HELIX 6 6 ALA A 185 GLU A 196 1 12 HELIX 7 7 THR A 208 ALA A 216 1 9 HELIX 8 8 LEU A 224 SER A 229 5 6 HELIX 9 9 THR A 246 THR A 251 1 6 HELIX 10 10 GLU A 268 ALA A 276 1 9 HELIX 11 11 ASP A 284 ALA A 287 1 4 HELIX 12 12 GLY A 290 GLU A 299 1 10 HELIX 13 13 GLU A 305 ASP A 329 1 25 HELIX 14 14 PRO A 333 ALA A 348 1 16 HELIX 15 15 ILE B 402 LEU B 406 1 5 HELIX 16 16 LEU B 449 VAL B 469 1 21 HELIX 17 17 ARG B 487 SER B 489 5 3 HELIX 18 18 PRO B 492 LEU B 509 1 18 HELIX 19 19 SER B 523 ASP B 531 1 9 HELIX 20 20 LEU B 541 ARG B 543 5 3 HELIX 21 21 ALA B 550 HIS B 567 1 18 HELIX 22 22 ALA B 585 GLU B 596 1 12 HELIX 23 23 THR B 608 ALA B 616 1 9 HELIX 24 24 LEU B 624 SER B 629 5 6 HELIX 25 25 THR B 646 THR B 651 1 6 HELIX 26 26 GLU B 668 ALA B 676 1 9 HELIX 27 27 ASP B 684 ALA B 687 1 4 HELIX 28 28 GLY B 690 GLU B 699 1 10 HELIX 29 29 GLU B 705 ASP B 729 1 25 HELIX 30 30 PRO B 733 ARG B 744 1 12
SHEET 1 A 4 MET A 12 ASP A 18 0 SHEET 2 A 4 ALA A 23 SER A 31 -1 N LEU A 29 O MET A 12 SHEET 3 A 4 GLY A 76 ALA A 82 -1 N ALA A 82 O HIS A 24 SHEET 4 A 4 THR A 41 ALA A 44 1 N ARG A 42 O SER A 79 SHEET 1 B 3 GLN A 200 ALA A 204 0 SHEET 2 B 3 THR A 177 GLN A 181 1 N VAL A 178 O GLN A 200 SHEET 3 B 3 VAL A 234 PRO A 237 1 N VAL A 234 O LEU A 179 SHEET 1 C 4 MET B 412 ASP B 418 0 SHEET 2 C 4 ALA B 423 SER B 431 -1 N LEU B 429 O MET B 412 SHEET 3 C 4 GLY B 476 LEU B 483 -1 N ALA B 482 O HIS B 424 SHEET 4 C 4 THR B 441 GLN B 445 1 N ARG B 442 O SER B 479 SHEET 1 D 3 GLN B 600 ALA B 604 0 SHEET 2 D 3 THR B 577 GLN B 581 1 N VAL B 578 O GLN B 600 SHEET 3 D 3 VAL B 634 PRO B 637 1 N VAL B 634 O LEU B 579
LINK NA NA B 851 O HOH B1319 1555 1555 2.30 LINK O ASP A 118 K K B 850 1555 1555 2.91 LINK O THR A 121 K K B 850 1555 1555 2.70 LINK O ASP B 409 NA NA B 851 1555 1555 2.62 LINK O SER B 572 K K B 853 1555 1555 2.61 LINK O ASP B 574 K K B 853 1555 1555 2.66 LINK NE2 GLN B 600 NA NA B 852 1555 1555 2.86 LINK O GLY B 618 NA NA B 852 1555 1555 2.59 LINK K K B 850 O HOH B 884 1555 1555 2.84 LINK K K B 850 O HOH A 656 1555 1555 2.72 LINK NA NA B 851 O HOH B1100 1555 1555 2.67 LINK NA NA B 851 O HOH B1227 1555 1555 2.89 LINK NA NA B 852 O HOH B1008 1555 1555 2.64 LINK NA NA B 852 O HOH B1326 1555 1555 2.74 LINK NA NA B 852 O HOH B1083 1555 1555 2.68 LINK K K B 853 O HOH B 993 1555 1555 2.59 LINK K K B 853 O HOH B1140 1555 1555 2.90 LINK K K B 850 O HOH A 728 1555 1555 3.07 LINK K K B 850 O HOH A 771 1555 1555 3.48 LINK K K B 853 O LEU B 570 1555 1555 3.04 LINK NA NA B 851 O HOH A 371 1555 4555 2.46 LINK NA NA B 851 O HOH A 436 1555 4555 2.41 LINK K K B 853 O2 PO4 B 880 1555 4456 2.87
SITE 1 AC1 5 ASP A 118 THR A 121 HOH A 656 HOH A 728 SITE 2 AC1 5 HOH B 884 SITE 1 AC2 6 HOH A 371 HOH A 436 ASP B 409 HOH B1100 SITE 2 AC2 6 HOH B1227 HOH B1319 SITE 1 AC3 5 GLN B 600 GLY B 618 HOH B1008 HOH B1083 SITE 2 AC3 5 HOH B1326 SITE 1 AC4 7 LEU B 570 SER B 572 ASP B 574 LEU B 576 SITE 2 AC4 7 PO4 B 880 HOH B 993 HOH B1140 SITE 1 AC5 11 SER B 401 SER B 404 LYS B 458 LEU B 570 SITE 2 AC5 11 LEU B 576 K B 853 HOH B1019 HOH B1038 SITE 3 AC5 11 HOH B1140 HOH B1157 HOH B1204 SITE 1 AC6 32 LYS A 66 LYS A 78 PRO A 117 ASP A 118 SITE 2 AC6 32 VAL A 119 GLY A 182 GLY A 184 ALA A 185 SITE 3 AC6 32 VAL A 186 ALA A 204 ASP A 205 THR A 206 SITE 4 AC6 32 ARG A 210 LEU A 224 CYS A 238 ALA A 239 SITE 5 AC6 32 MET A 240 ALA A 260 ALA A 261 ASN A 262 SITE 6 AC6 32 PPY A 361 HOH A 394 HOH A 395 HOH A 446 SITE 7 AC6 32 HOH A 493 HOH A 521 HOH A 552 HOH A 656 SITE 8 AC6 32 HOH A 761 HOH A 771 EDO B 874 HOH B 881 SITE 1 AC7 13 GLY A 39 GLY A 40 MET A 63 LYS A 66 SITE 2 AC7 13 LYS A 78 GLY A 116 PRO A 117 GLY A 291 SITE 3 AC7 13 ALA A 292 LEU A 295 NAD A 360 HOH A 414 SITE 4 AC7 13 HOH B 882 SITE 1 AC8 13 LEU B 583 GLY B 584 ALA B 585 VAL B 586 SITE 2 AC8 13 ASP B 605 THR B 606 ARG B 610 HOH B 905 SITE 3 AC8 13 HOH B 907 HOH B 935 HOH B1044 HOH B1239 SITE 4 AC8 13 HOH B1381 SITE 1 AC9 8 HOH A 382 GLY B 439 GLY B 440 MET B 463 SITE 2 AC9 8 LYS B 466 LYS B 478 GLY B 516 PRO B 517 SITE 1 BC1 3 MET B 474 IPA B 861 HOH B1193 SITE 1 BC2 2 HOH A 600 HOH B 887 SITE 1 BC3 8 SER A 149 ALA A 150 THR A 153 VAL A 186 SITE 2 BC3 8 NAD A 360 HOH B 881 HOH B 882 HOH B 884 SITE 1 BC4 5 CYS A 232 ASP A 253 CYS A 254 SER A 255 SITE 2 BC4 5 HOH A 610 SITE 1 BC5 5 ALA A 276 LEU B 434 PRO B 473 EDO B 871 SITE 2 BC5 5 HOH B1071 SITE 1 BC6 6 ARG B 442 ASP B 455 LYS B 458 LEU B 459 SITE 2 BC6 6 ASN B 663 HOH B1123 SITE 1 BC7 5 THR A 15 LEU A 49 LEU B 406 ARG B 428 SITE 2 BC7 5 HOH B 985
CRYST1 64.300 110.200 113.400 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015552 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009074 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008818 0.00000