10 20 30 40 50 60 70 80 1BV2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID-BINDING PROTEIN 21-SEP-98 1BV2
TITLE LIPID TRANSFER PROTEIN FROM RICE SEEDS, NMR, 14 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSPECIFIC LIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 ORGAN: SEEDS
KEYWDS LIPID-BINDING PROTEIN, LIPID TRANSFER PROTEIN, RICE, KEYWDS 2 MOLECULAR MODELING, NMR
EXPDTA SOLUTION NMR
NUMMDL 14
AUTHOR J.POZNANSKI,P.SODANO,S.W.SUH,J.Y.LEE,M.PTAK,F.VOVELLE
REVDAT 2 24-FEB-09 1BV2 1 VERSN REVDAT 1 18-MAY-99 1BV2 0
JRNL AUTH J.POZNANSKI,P.SODANO,S.W.SUH,J.Y.LEE,M.PTAK, JRNL AUTH 2 F.VOVELLE JRNL TITL SOLUTION STRUCTURE OF A LIPID TRANSFER PROTEIN JRNL TITL 2 EXTRACTED FROM RICE SEEDS. COMPARISON WITH JRNL TITL 3 HOMOLOGOUS PROTEINS. JRNL REF EUR.J.BIOCHEM. V. 259 692 1999 JRNL REFN ISSN 0014-2956 JRNL PMID 10092854 JRNL DOI 10.1046/J.1432-1327.1999.00093.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1BV2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O AND 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY TOCSY P-COSY 2Q-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX-500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, DIANA, X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION AND REMARK 210 ANALYSIS OF THE RAMACHANDRAN REMARK 210 MAPS AND ENERGETIC CRITERIA REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 56 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 3 ARG A 45 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 6 CYS A 73 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 9 CYS A 13 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 55 28.42 -71.19 REMARK 500 1 LYS A 59 34.23 -97.41 REMARK 500 1 SER A 76 91.75 117.23 REMARK 500 1 ILE A 81 66.47 31.28 REMARK 500 1 ILE A 85 78.24 -18.66 REMARK 500 1 ASP A 86 37.68 -94.26 REMARK 500 1 CYS A 87 -126.65 28.70 REMARK 500 1 SER A 88 26.77 44.45 REMARK 500 2 THR A 2 -167.35 -114.17 REMARK 500 2 SER A 76 89.37 -31.89 REMARK 500 2 SER A 84 54.61 -110.79 REMARK 500 2 SER A 88 -54.00 93.40 REMARK 500 2 ARG A 89 59.89 -94.43 REMARK 500 3 ALA A 55 10.58 -56.86 REMARK 500 3 LYS A 59 82.85 -10.40 REMARK 500 3 VAL A 75 62.76 -116.74 REMARK 500 3 SER A 76 95.07 -33.98 REMARK 500 3 ILE A 81 52.70 32.04 REMARK 500 3 SER A 88 -42.39 122.99 REMARK 500 3 ARG A 89 44.16 -99.19 REMARK 500 4 ALA A 55 35.79 -74.58 REMARK 500 4 ILE A 58 55.74 -107.84 REMARK 500 4 LYS A 59 76.23 -20.81 REMARK 500 4 ASN A 65 -49.75 -131.23 REMARK 500 4 SER A 76 86.94 30.74 REMARK 500 4 TYR A 79 156.52 165.46 REMARK 500 4 SER A 84 50.52 -143.15 REMARK 500 4 ARG A 89 73.97 43.37 REMARK 500 4 VAL A 90 40.38 -80.73 REMARK 500 5 ALA A 55 -2.50 -57.21 REMARK 500 5 ARG A 56 57.28 -95.19 REMARK 500 5 ILE A 58 74.08 -108.31 REMARK 500 5 LYS A 59 60.93 11.65 REMARK 500 5 ASN A 65 -43.20 -131.43 REMARK 500 5 VAL A 75 63.18 -117.04 REMARK 500 5 SER A 76 87.38 -33.09 REMARK 500 5 THR A 80 -156.26 -145.95 REMARK 500 5 SER A 88 -37.28 114.55 REMARK 500 5 ARG A 89 47.05 -93.59 REMARK 500 5 VAL A 90 -59.91 -124.28 REMARK 500 6 VAL A 10 24.17 -79.53 REMARK 500 6 ALA A 38 46.37 -88.55 REMARK 500 6 ALA A 55 36.74 -78.97 REMARK 500 6 ILE A 58 54.07 -108.21 REMARK 500 6 LYS A 59 70.73 -8.77 REMARK 500 6 VAL A 75 68.70 -111.40 REMARK 500 6 SER A 76 96.14 -33.58 REMARK 500 6 ILE A 81 62.61 32.57 REMARK 500 6 ASP A 86 -80.39 -130.72 REMARK 500 6 CYS A 87 174.59 75.58 REMARK 500 6 SER A 88 -54.42 144.26 REMARK 500 6 ARG A 89 59.03 -117.21 REMARK 500 7 ARG A 56 -47.30 -22.17 REMARK 500 7 ILE A 58 67.96 -101.26 REMARK 500 7 LYS A 59 -52.41 -16.91 REMARK 500 7 SER A 76 104.16 103.51 REMARK 500 7 ILE A 85 83.00 -1.25 REMARK 500 7 SER A 88 -39.48 124.69 REMARK 500 7 ARG A 89 52.16 -110.00 REMARK 500 8 ALA A 55 39.31 -81.53 REMARK 500 8 LYS A 59 96.75 -37.12 REMARK 500 8 ASN A 65 -52.82 -133.17 REMARK 500 8 SER A 76 92.31 31.24 REMARK 500 8 THR A 80 -149.59 -142.20 REMARK 500 8 CYS A 87 66.13 -110.73 REMARK 500 8 ARG A 89 75.97 63.76 REMARK 500 9 VAL A 10 31.45 -79.07 REMARK 500 9 SER A 39 -64.57 -103.65 REMARK 500 9 THR A 41 -73.29 19.45 REMARK 500 9 VAL A 75 60.16 -114.64 REMARK 500 9 SER A 76 92.78 -34.29 REMARK 500 9 ILE A 85 107.77 -8.05 REMARK 500 9 CYS A 87 61.71 -105.07 REMARK 500 10 SER A 39 -59.39 -121.53 REMARK 500 10 ALA A 55 32.38 -72.58 REMARK 500 10 ILE A 58 58.97 -116.45 REMARK 500 10 LYS A 59 -59.86 -6.05 REMARK 500 10 VAL A 75 58.60 -115.31 REMARK 500 10 SER A 76 92.89 -31.87 REMARK 500 10 ILE A 81 56.92 37.26 REMARK 500 10 SER A 84 -73.16 -97.66 REMARK 500 10 ILE A 85 81.41 3.14 REMARK 500 10 CYS A 87 128.27 -30.64 REMARK 500 10 SER A 88 -42.95 -172.92 REMARK 500 11 ALA A 38 47.47 -97.69 REMARK 500 11 SER A 39 -71.65 -34.20 REMARK 500 11 THR A 41 -74.74 18.57 REMARK 500 11 ALA A 55 29.93 -70.07 REMARK 500 11 ILE A 58 70.87 -114.36 REMARK 500 11 LYS A 59 80.36 -53.83 REMARK 500 11 VAL A 75 64.85 -118.97 REMARK 500 11 SER A 76 99.56 -30.58 REMARK 500 11 TYR A 79 163.72 155.04 REMARK 500 11 THR A 80 -150.66 -176.23 REMARK 500 11 SER A 82 -159.52 -102.83 REMARK 500 11 ALA A 83 -64.96 -101.19 REMARK 500 11 SER A 88 -37.80 108.45 REMARK 500 11 ARG A 89 37.17 -95.28 REMARK 500 12 VAL A 10 28.97 -78.02 REMARK 500 12 LYS A 59 -67.04 0.76 REMARK 500 12 VAL A 75 63.85 -117.10 REMARK 500 12 SER A 76 95.09 -30.28 REMARK 500 12 ILE A 81 56.84 29.71 REMARK 500 12 ILE A 85 137.76 -25.42 REMARK 500 12 SER A 88 -51.62 123.68 REMARK 500 13 VAL A 10 34.45 -81.88 REMARK 500 13 ILE A 58 67.19 -103.98 REMARK 500 13 LYS A 59 -55.92 -12.18 REMARK 500 13 SER A 76 69.00 29.18 REMARK 500 13 PRO A 78 32.61 -97.99 REMARK 500 13 TYR A 79 155.45 156.04 REMARK 500 13 THR A 80 -148.14 -144.28 REMARK 500 13 SER A 88 -35.88 128.37 REMARK 500 13 ARG A 89 50.27 -92.09 REMARK 500 14 ALA A 55 12.16 -59.61 REMARK 500 14 LYS A 59 -63.68 -5.94 REMARK 500 14 VAL A 75 56.60 -116.74 REMARK 500 14 SER A 76 83.63 -33.15 REMARK 500 14 THR A 80 -154.18 -144.43 REMARK 500 14 CYS A 87 155.10 120.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.31 SIDE_CHAIN REMARK 500 1 ARG A 32 0.28 SIDE_CHAIN REMARK 500 1 ARG A 44 0.31 SIDE_CHAIN REMARK 500 1 ARG A 45 0.27 SIDE_CHAIN REMARK 500 1 ARG A 56 0.29 SIDE_CHAIN REMARK 500 1 ARG A 89 0.31 SIDE_CHAIN REMARK 500 2 ARG A 18 0.31 SIDE_CHAIN REMARK 500 2 ARG A 32 0.32 SIDE_CHAIN REMARK 500 2 ARG A 44 0.31 SIDE_CHAIN REMARK 500 2 ARG A 45 0.21 SIDE_CHAIN REMARK 500 2 ARG A 56 0.27 SIDE_CHAIN REMARK 500 2 ARG A 89 0.32 SIDE_CHAIN REMARK 500 3 ARG A 18 0.24 SIDE_CHAIN REMARK 500 3 ARG A 32 0.32 SIDE_CHAIN REMARK 500 3 ARG A 44 0.28 SIDE_CHAIN REMARK 500 3 ARG A 45 0.29 SIDE_CHAIN REMARK 500 3 ARG A 56 0.30 SIDE_CHAIN REMARK 500 3 ARG A 89 0.31 SIDE_CHAIN REMARK 500 4 ARG A 18 0.29 SIDE_CHAIN REMARK 500 4 ARG A 32 0.29 SIDE_CHAIN REMARK 500 4 ARG A 44 0.31 SIDE_CHAIN REMARK 500 4 ARG A 45 0.27 SIDE_CHAIN REMARK 500 4 ARG A 56 0.29 SIDE_CHAIN REMARK 500 4 ARG A 89 0.31 SIDE_CHAIN REMARK 500 5 ARG A 18 0.26 SIDE_CHAIN REMARK 500 5 ARG A 32 0.31 SIDE_CHAIN REMARK 500 5 ARG A 44 0.29 SIDE_CHAIN REMARK 500 5 ARG A 45 0.32 SIDE_CHAIN REMARK 500 5 ARG A 56 0.30 SIDE_CHAIN REMARK 500 5 ARG A 89 0.26 SIDE_CHAIN REMARK 500 6 ARG A 18 0.28 SIDE_CHAIN REMARK 500 6 ARG A 32 0.31 SIDE_CHAIN REMARK 500 6 ARG A 44 0.27 SIDE_CHAIN REMARK 500 6 ARG A 45 0.22 SIDE_CHAIN REMARK 500 6 ARG A 56 0.32 SIDE_CHAIN REMARK 500 6 ARG A 89 0.30 SIDE_CHAIN REMARK 500 7 ARG A 18 0.31 SIDE_CHAIN REMARK 500 7 ARG A 32 0.31 SIDE_CHAIN REMARK 500 7 ARG A 44 0.26 SIDE_CHAIN REMARK 500 7 ARG A 45 0.30 SIDE_CHAIN REMARK 500 7 ARG A 56 0.27 SIDE_CHAIN REMARK 500 7 ARG A 89 0.30 SIDE_CHAIN REMARK 500 8 ARG A 18 0.21 SIDE_CHAIN REMARK 500 8 ARG A 32 0.30 SIDE_CHAIN REMARK 500 8 ARG A 44 0.30 SIDE_CHAIN REMARK 500 8 ARG A 45 0.31 SIDE_CHAIN REMARK 500 8 ARG A 56 0.17 SIDE_CHAIN REMARK 500 8 ARG A 89 0.21 SIDE_CHAIN REMARK 500 9 ARG A 18 0.28 SIDE_CHAIN REMARK 500 9 ARG A 32 0.31 SIDE_CHAIN REMARK 500 9 ARG A 44 0.32 SIDE_CHAIN REMARK 500 9 ARG A 45 0.28 SIDE_CHAIN REMARK 500 9 ARG A 56 0.24 SIDE_CHAIN REMARK 500 9 ARG A 89 0.30 SIDE_CHAIN REMARK 500 10 ARG A 18 0.28 SIDE_CHAIN REMARK 500 10 ARG A 32 0.19 SIDE_CHAIN REMARK 500 10 ARG A 44 0.30 SIDE_CHAIN REMARK 500 10 ARG A 45 0.31 SIDE_CHAIN REMARK 500 10 ARG A 56 0.24 SIDE_CHAIN REMARK 500 10 ARG A 89 0.31 SIDE_CHAIN REMARK 500 11 ARG A 18 0.30 SIDE_CHAIN REMARK 500 11 ARG A 32 0.29 SIDE_CHAIN REMARK 500 11 ARG A 44 0.20 SIDE_CHAIN REMARK 500 11 ARG A 45 0.31 SIDE_CHAIN REMARK 500 11 ARG A 56 0.16 SIDE_CHAIN REMARK 500 11 ARG A 89 0.26 SIDE_CHAIN REMARK 500 12 ARG A 18 0.32 SIDE_CHAIN REMARK 500 12 ARG A 32 0.27 SIDE_CHAIN REMARK 500 12 ARG A 44 0.18 SIDE_CHAIN REMARK 500 12 ARG A 45 0.26 SIDE_CHAIN REMARK 500 12 ARG A 56 0.31 SIDE_CHAIN REMARK 500 12 ARG A 89 0.31 SIDE_CHAIN REMARK 500 13 ARG A 18 0.27 SIDE_CHAIN REMARK 500 13 ARG A 32 0.31 SIDE_CHAIN REMARK 500 13 ARG A 44 0.31 SIDE_CHAIN REMARK 500 13 ARG A 45 0.25 SIDE_CHAIN REMARK 500 13 ARG A 56 0.31 SIDE_CHAIN REMARK 500 13 ARG A 89 0.26 SIDE_CHAIN REMARK 500 14 ARG A 18 0.31 SIDE_CHAIN REMARK 500 14 ARG A 32 0.30 SIDE_CHAIN REMARK 500 14 ARG A 44 0.29 SIDE_CHAIN REMARK 500 14 ARG A 45 0.20 SIDE_CHAIN REMARK 500 14 ARG A 56 0.30 SIDE_CHAIN REMARK 500 14 ARG A 89 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1BV2 A 1 91 UNP P23096 NLTP1_ORYSA 26 116
SEQADV 1BV2 LYS A 35 UNP P23096 PHE 60 SEE REMARK 999
SEQRES 1 A 91 ILE THR CYS GLY GLN VAL ASN SER ALA VAL GLY PRO CYS SEQRES 2 A 91 LEU THR TYR ALA ARG GLY GLY ALA GLY PRO SER ALA ALA SEQRES 3 A 91 CYS CYS SER GLY VAL ARG SER LEU LYS ALA ALA ALA SER SEQRES 4 A 91 THR THR ALA ASP ARG ARG THR ALA CYS ASN CYS LEU LYS SEQRES 5 A 91 ASN ALA ALA ARG GLY ILE LYS GLY LEU ASN ALA GLY ASN SEQRES 6 A 91 ALA ALA SER ILE PRO SER LYS CYS GLY VAL SER VAL PRO SEQRES 7 A 91 TYR THR ILE SER ALA SER ILE ASP CYS SER ARG VAL SER
HELIX 1 H1 CYS A 3 ARG A 18 1BENT AT PRO 12 16 HELIX 2 H2 ALA A 25 ALA A 37 1 13 HELIX 3 H3 THR A 41 ALA A 54 1 14 HELIX 4 H4 ALA A 66 CYS A 73 1 8
SSBOND 1 CYS A 3 CYS A 50 1555 1555 2.02 SSBOND 2 CYS A 13 CYS A 27 1555 1555 2.02 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.02 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.02
CISPEP 1 GLY A 22 PRO A 23 1 8.00 CISPEP 2 GLY A 22 PRO A 23 2 7.43 CISPEP 3 GLY A 22 PRO A 23 3 -2.27 CISPEP 4 GLY A 22 PRO A 23 4 -7.77 CISPEP 5 GLY A 22 PRO A 23 5 -2.40 CISPEP 6 GLY A 22 PRO A 23 6 -3.15 CISPEP 7 GLY A 22 PRO A 23 7 -2.19 CISPEP 8 GLY A 22 PRO A 23 8 -1.39 CISPEP 9 GLY A 22 PRO A 23 9 -15.98 CISPEP 10 GLY A 22 PRO A 23 10 -1.38 CISPEP 11 GLY A 22 PRO A 23 11 -5.14 CISPEP 12 GLY A 22 PRO A 23 12 -14.38 CISPEP 13 GLY A 22 PRO A 23 13 -4.99 CISPEP 14 GLY A 22 PRO A 23 14 -2.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000