10 20 30 40 50 60 70 80 1BUT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 04-SEP-98 1BUT
TITLE NMR STRUCTURE OF THE DNA DECAMER D(CATGGCCATG)2, 10 TITLE 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(CATGGCCATG)-3')2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: IN 100 MM NACL AND 0.2 MM EDTA, PH 7.0 AT COMPND 6 300 K, 2 MM DUPLEX CONCENTRATION
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS DEOXYRIBONUCLEIC ACID, DNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR U.DORNBERGER,J.FLEMMING,H.FRITZSCHE
REVDAT 2 24-FEB-09 1BUT 1 VERSN REVDAT 1 18-MAY-99 1BUT 0
JRNL AUTH U.DORNBERGER,J.FLEMMING,H.FRITZSCHE JRNL TITL STRUCTURE DETERMINATION AND ANALYSIS OF HELIX JRNL TITL 2 PARAMETERS IN THE DNA DECAMER D(CATGGCCATG)2 JRNL TITL 3 COMPARISON OF RESULTS FROM NMR AND CRYSTALLOGRAPHY. JRNL REF J.MOL.BIOL. V. 284 1453 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9878363 JRNL DOI 10.1006/JMBI.1998.2261
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REDAC STRATEGY USED
REMARK 4 REMARK 4 1BUT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, H-P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA 500, 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DT B 19 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 DT B 19 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 2 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 DT A 9 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 4 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 DT A 9 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 5 DG A 10 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 5 DC B 11 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 5 DC B 11 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 6 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 DT A 9 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 6 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 DT B 19 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 6 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 7 DG A 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 7 DC B 11 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 7 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 DT A 9 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 8 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 9 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 DC B 11 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 DT B 19 C6 - C5 - C7 ANGL. DEV. = -4.2 DEGREES REMARK 500 9 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 10 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 DC B 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 10 DT B 19 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 10 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DA A 2 0.11 SIDE_CHAIN REMARK 500 1 DT A 3 0.08 SIDE_CHAIN REMARK 500 1 DC A 7 0.06 SIDE_CHAIN REMARK 500 1 DA A 8 0.05 SIDE_CHAIN REMARK 500 1 DA B 12 0.10 SIDE_CHAIN REMARK 500 1 DT B 13 0.08 SIDE_CHAIN REMARK 500 1 DC B 17 0.06 SIDE_CHAIN REMARK 500 1 DA B 18 0.05 SIDE_CHAIN REMARK 500 1 DG B 20 0.06 SIDE_CHAIN REMARK 500 2 DA A 2 0.09 SIDE_CHAIN REMARK 500 2 DT A 3 0.08 SIDE_CHAIN REMARK 500 2 DC A 7 0.07 SIDE_CHAIN REMARK 500 2 DG A 10 0.06 SIDE_CHAIN REMARK 500 2 DA B 12 0.09 SIDE_CHAIN REMARK 500 2 DT B 13 0.07 SIDE_CHAIN REMARK 500 2 DC B 17 0.07 SIDE_CHAIN REMARK 500 2 DG B 20 0.06 SIDE_CHAIN REMARK 500 3 DA A 2 0.10 SIDE_CHAIN REMARK 500 3 DT A 3 0.08 SIDE_CHAIN REMARK 500 3 DC A 7 0.06 SIDE_CHAIN REMARK 500 3 DA A 8 0.07 SIDE_CHAIN REMARK 500 3 DA B 12 0.12 SIDE_CHAIN REMARK 500 3 DT B 13 0.08 SIDE_CHAIN REMARK 500 3 DC B 17 0.06 SIDE_CHAIN REMARK 500 3 DG B 20 0.07 SIDE_CHAIN REMARK 500 4 DA A 2 0.10 SIDE_CHAIN REMARK 500 4 DT A 3 0.08 SIDE_CHAIN REMARK 500 4 DC A 7 0.07 SIDE_CHAIN REMARK 500 4 DA B 12 0.11 SIDE_CHAIN REMARK 500 4 DT B 13 0.08 SIDE_CHAIN REMARK 500 4 DC B 17 0.06 SIDE_CHAIN REMARK 500 4 DA B 18 0.05 SIDE_CHAIN REMARK 500 4 DG B 20 0.06 SIDE_CHAIN REMARK 500 5 DA A 2 0.11 SIDE_CHAIN REMARK 500 5 DT A 3 0.09 SIDE_CHAIN REMARK 500 5 DC A 7 0.07 SIDE_CHAIN REMARK 500 5 DA B 12 0.08 SIDE_CHAIN REMARK 500 5 DT B 13 0.09 SIDE_CHAIN REMARK 500 5 DC B 17 0.06 SIDE_CHAIN REMARK 500 6 DA A 2 0.10 SIDE_CHAIN REMARK 500 6 DT A 3 0.09 SIDE_CHAIN REMARK 500 6 DC A 7 0.07 SIDE_CHAIN REMARK 500 6 DG A 10 0.06 SIDE_CHAIN REMARK 500 6 DA B 12 0.10 SIDE_CHAIN REMARK 500 6 DT B 13 0.08 SIDE_CHAIN REMARK 500 6 DC B 17 0.07 SIDE_CHAIN REMARK 500 7 DA A 2 0.10 SIDE_CHAIN REMARK 500 7 DT A 3 0.08 SIDE_CHAIN REMARK 500 7 DC A 7 0.07 SIDE_CHAIN REMARK 500 7 DC B 11 0.09 SIDE_CHAIN REMARK 500 7 DA B 12 0.09 SIDE_CHAIN REMARK 500 7 DT B 13 0.09 SIDE_CHAIN REMARK 500 7 DC B 17 0.06 SIDE_CHAIN REMARK 500 7 DG B 20 0.06 SIDE_CHAIN REMARK 500 8 DA A 2 0.11 SIDE_CHAIN REMARK 500 8 DT A 3 0.08 SIDE_CHAIN REMARK 500 8 DC A 7 0.07 SIDE_CHAIN REMARK 500 8 DG A 10 0.06 SIDE_CHAIN REMARK 500 8 DA B 12 0.10 SIDE_CHAIN REMARK 500 8 DT B 13 0.07 SIDE_CHAIN REMARK 500 8 DC B 17 0.07 SIDE_CHAIN REMARK 500 8 DG B 20 0.06 SIDE_CHAIN REMARK 500 9 DA A 2 0.10 SIDE_CHAIN REMARK 500 9 DT A 3 0.08 SIDE_CHAIN REMARK 500 9 DC A 7 0.06 SIDE_CHAIN REMARK 500 9 DA A 8 0.05 SIDE_CHAIN REMARK 500 9 DG A 10 0.06 SIDE_CHAIN REMARK 500 9 DA B 12 0.10 SIDE_CHAIN REMARK 500 9 DT B 13 0.08 SIDE_CHAIN REMARK 500 9 DC B 17 0.06 SIDE_CHAIN REMARK 500 10 DA A 2 0.10 SIDE_CHAIN REMARK 500 10 DT A 3 0.08 SIDE_CHAIN REMARK 500 10 DC A 7 0.06 SIDE_CHAIN REMARK 500 10 DA A 8 0.06 SIDE_CHAIN REMARK 500 10 DA B 12 0.10 SIDE_CHAIN REMARK 500 10 DT B 13 0.08 SIDE_CHAIN REMARK 500 10 DA B 18 0.05 SIDE_CHAIN REMARK 500 10 DG B 20 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1BUT A 1 10 PDB 1BUT 1BUT 1 10 DBREF 1BUT B 11 20 PDB 1BUT 1BUT 11 20
SEQRES 1 A 10 DC DA DT DG DG DC DC DA DT DG SEQRES 1 B 10 DC DA DT DG DG DC DC DA DT DG
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000