10 20 30 40 50 60 70 80 1BQX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 20-AUG-98 1BQX
TITLE ARTIFICIAL FE8S8 FERREDOXIN: THE D13C VARIANT OF BACILLUS TITLE 2 SCHLEGELII FE7S8 FERREDOXIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FERREDOXIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SCHLEGELII; SOURCE 3 ORGANISM_TAXID: 1484; SOURCE 4 ATCC: ATCC 43741; SOURCE 5 COLLECTION: ATCC 43741; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM 109; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKKFD D13C
KEYWDS IRON-SULFUR PROTEIN, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
AUTHOR S.AONO,D.BENTROP,I.BERTINI,G.COSENZA,C.LUCHINAT
REVDAT 3 24-FEB-09 1BQX 1 VERSN REVDAT 2 29-DEC-99 1BQX 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 26-AUG-98 1BQX 0
JRNL AUTH S.AONO,D.BENTROP,I.BERTINI,G.COSENZA,C.LUCHINAT JRNL TITL SOLUTION STRUCTURE OF AN ARTIFICIAL FE8S8 JRNL TITL 2 FERREDOXIN: THE D13C VARIANT OF BACILLUS JRNL TITL 3 SCHLEGELII FE7S8 FERREDOXIN. JRNL REF EUR.J.BIOCHEM. V. 258 502 1998 JRNL REFN ISSN 0014-2956 JRNL PMID 9874217 JRNL DOI 10.1046/J.1432-1327.1998.2580502.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.AONO,D.BENTROP,I.BERTINI,C.LUCHINAT,R.MACINAI REMARK 1 TITL THE D13C VARIANT OF BACILLUS SCHLEGELII 7FE REMARK 1 TITL 2 FERREDOXIN IS AN 8FE FERREDOXIN AS REVEALED BY REMARK 1 TITL 3 1H-NMR SPECTROSCOPY REMARK 1 REF FEBS LETT. V. 412 501 1997 REMARK 1 REFN ISSN 0014-5793
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 4.1 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE CALCULATIONS WERE REMARK 3 CARRIED OUT WITH THE TORSION ANGLE DYNAMICS PROGRAM DYANA (BY REMARK 3 GUENTERT,MUMENTHALER,WUETHRICH). THE 20 STRUCTURES OF THE REMARK 3 DYANA FAMILY WITH THE LOWEST TARGET FUNCTION VALUES WERE REMARK 3 REFINED BY RESTRAINED ENERGY MINIMIZATION(REM) AND RESTRAINED REMARK 3 MOLECULAR DYNAMICS (RMD) IN VACUO. THE STRUCTURE IN THIS ENTRY REMARK 3 REPRESENTS THE MINIMIZED AVERAGE STRUCTURE OF THE RMD FAMILY. REMARK 3 REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
REMARK 4 REMARK 4 1BQX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-99. REMARK 100 THE RCSB ID CODE IS RCSB008319.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY, 1D-NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE500, AVANCE600, REMARK 210 AVANCE800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA, AMBER REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED ENERGY REMARK 210 MINIMIZATION, RESTRAINED REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MINIMIZED AVERAGE STRUCTURE. THE STRUCTURE WAS REMARK 210 DETERMINED USING 1H NMR SPECTROSCOPY. EXPERIMENTAL DETAILS CAN REMARK 210 BE FOUND IN THE JRNL CITATION ABOVE.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 5 -97.71 -143.92 REMARK 500 GLU A 6 -52.54 -127.18 REMARK 500 PRO A 7 31.35 -70.37 REMARK 500 THR A 11 84.85 15.48 REMARK 500 LYS A 12 58.38 75.99 REMARK 500 SER A 15 -57.44 -155.84 REMARK 500 VAL A 17 -92.22 -126.74 REMARK 500 GLU A 18 32.18 -75.69 REMARK 500 ASP A 23 61.96 36.71 REMARK 500 GLU A 29 -61.84 65.24 REMARK 500 ILE A 40 38.60 -90.99 REMARK 500 PRO A 50 26.02 -75.15 REMARK 500 SER A 52 98.48 63.12 REMARK 500 ALA A 53 -21.37 -154.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 33 0.10 SIDE_CHAIN REMARK 500 TYR A 55 0.21 SIDE_CHAIN REMARK 500 ARG A 72 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 78 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 79
DBREF 1BQX A 1 77 UNP Q45560 FER_BACSC 1 77
SEQADV 1BQX CYS A 13 UNP Q45560 ASP 13 ENGINEERED
SEQRES 1 A 77 ALA TYR VAL ILE THR GLU PRO CYS ILE GLY THR LYS CYS SEQRES 2 A 77 ALA SER CYS VAL GLU VAL CYS PRO VAL ASP CYS ILE HIS SEQRES 3 A 77 GLU GLY GLU ASP GLN TYR TYR ILE ASP PRO ASP VAL CYS SEQRES 4 A 77 ILE ASP CYS GLY ALA CYS GLU ALA VAL CYS PRO VAL SER SEQRES 5 A 77 ALA ILE TYR HIS GLU ASP PHE VAL PRO GLU GLU TRP LYS SEQRES 6 A 77 SER TYR ILE GLN LYS ASN ARG ASP PHE PHE LYS LYS
HET SF4 A 78 8 HET SF4 A 79 8
HETNAM SF4 IRON/SULFUR CLUSTER
FORMUL 2 SF4 2(FE4 S4)
HELIX 1 1 ALA A 44 VAL A 48 1 5 HELIX 2 2 GLU A 62 PHE A 75 1 14
SHEET 1 A 2 ILE A 25 GLU A 27 0 SHEET 2 A 2 TYR A 32 ILE A 34 -1 N TYR A 33 O HIS A 26
LINK FE1 SF4 A 78 SG CYS A 8 1555 1555 2.03 LINK FE2 SF4 A 78 SG CYS A 13 1555 1555 2.05 LINK FE3 SF4 A 78 SG CYS A 16 1555 1555 2.10 LINK FE4 SF4 A 78 SG CYS A 49 1555 1555 2.03 LINK FE1 SF4 A 79 SG CYS A 20 1555 1555 2.07 LINK FE2 SF4 A 79 SG CYS A 39 1555 1555 2.05 LINK FE3 SF4 A 79 SG CYS A 42 1555 1555 2.10 LINK FE4 SF4 A 79 SG CYS A 45 1555 1555 2.04
SITE 1 AC1 7 CYS A 8 CYS A 13 SER A 15 CYS A 16 SITE 2 AC1 7 TYR A 32 CYS A 49 ILE A 54 SITE 1 AC2 7 CYS A 20 CYS A 24 ILE A 34 CYS A 39 SITE 2 AC2 7 ILE A 40 CYS A 42 CYS A 45
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000