1BJT - Header Asymmetric Unit

HEADER TOPOISOMERASE 29-JUN-98 1BJT

TITLE TOPOISOMERASE II RESIDUES 409-1201

COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOPOISOMERASE II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING AND CLEAVAGE CORE, RESIDUES 409-1201; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932

KEYWDS TOPOISOMERASE, QUATERNARY CHANGE, DNA-BINDING, DNA TOPOLOGY

EXPDTA X-RAY DIFFRACTION

AUTHOR D.FASS,C.E.BOGDEN,J.M.BERGER

REVDAT 3 13-JUL-11 1BJT 1 VERSN REVDAT 2 24-FEB-09 1BJT 1 VERSN REVDAT 1 04-MAY-99 1BJT 0

JRNL AUTH D.FASS,C.E.BOGDEN,J.M.BERGER JRNL TITL QUATERNARY CHANGES IN TOPOISOMERASE II MAY DIRECT ORTHOGONAL JRNL TITL 2 MOVEMENT OF TWO DNA STRANDS. JRNL REF NAT.STRUCT.BIOL. V. 6 322 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10201398 JRNL DOI 10.1038/7556

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.BERGER,S.J.GAMBLIN,S.C.HARRISON,J.C.WANG REMARK 1 TITL STRUCTURE AND MECHANISM OF DNA TOPOISOMERASE II REMARK 1 REF NATURE V. 379 225 1996 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.M.BERGER,S.J.GAMBLIN,S.C.HARRISON,J.C.WANG REMARK 1 TITL ERRATUM. STRUCTURE AND MECHANISM OF DNA TOPOISOMERASE II REMARK 1 REF NATURE V. 380 179 1996 REMARK 1 REFN ISSN 0028-0836

REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 40597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2905 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4515 REMARK 3 BIN R VALUE (WORKING SET) : 0.3487 REMARK 3 BIN FREE R VALUE : 0.3731 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 373 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.59 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.16 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE B FACTORS FOR RESIDUES 653 - 659 ARE VERY HIGH, BUT THE REMARK 3 DENSITY FOR THESE RESIDUES WAS SEEN IN SOLVENT-FLATTENED REMARK 3 MIR MAPS. THESE RESIDUES HELPED ASSIGN THE CONNECTIVITY REMARK 3 BETWEEN DOMAINS IN THE DIMER.

REMARK 4 REMARK 4 1BJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 118 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1402 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.20600 REMARK 200 R SYM FOR SHELL (I) : 0.20600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MULTIPLE ISOMORPHOUS REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.70000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.65000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 409 REMARK 465 ASN A 410 REMARK 465 ALA A 411 REMARK 465 LEU A 412 REMARK 465 LYS A 413 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 ASP A 416 REMARK 465 GLY A 417 REMARK 465 THR A 418 REMARK 465 SER A 485 REMARK 465 ALA A 486 REMARK 465 ASP A 487 REMARK 465 GLN A 488 REMARK 465 ILE A 489 REMARK 465 GLN A 527 REMARK 465 ASP A 528 REMARK 465 HIS A 529 REMARK 465 ASP A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 632 REMARK 465 ASN A 633 REMARK 465 ASP A 634 REMARK 465 LYS A 635 REMARK 465 ASP A 636 REMARK 465 TYR A 637 REMARK 465 ILE A 638 REMARK 465 ASP A 639 REMARK 465 LEU A 640 REMARK 465 ALA A 641 REMARK 465 PHE A 642 REMARK 465 SER A 643 REMARK 465 LYS A 644 REMARK 465 LYS A 645 REMARK 465 LYS A 646 REMARK 465 ALA A 647 REMARK 465 ASP A 648 REMARK 465 ASP A 649 REMARK 465 ARG A 650 REMARK 465 LYS A 651 REMARK 465 GLU A 652 REMARK 465 GLY A 660 REMARK 465 THR A 661 REMARK 465 VAL A 662 REMARK 465 LEU A 663 REMARK 465 ASP A 664 REMARK 465 PRO A 665 REMARK 465 THR A 666 REMARK 465 LEU A 667 REMARK 465 LYS A 668 REMARK 465 GLU A 669 REMARK 465 ILE A 670 REMARK 465 PRO A 671 REMARK 465 ILE A 672 REMARK 465 SER A 673 REMARK 465 ASP A 674 REMARK 465 ASN A 1072 REMARK 465 ASP A 1073 REMARK 465 GLU A 1074 REMARK 465 ILE A 1075 REMARK 465 ALA A 1076 REMARK 465 GLU A 1077 REMARK 465 GLN A 1078 REMARK 465 ILE A 1079 REMARK 465 ASN A 1080 REMARK 465 ASP A 1081 REMARK 465 VAL A 1082 REMARK 465 LYS A 1083 REMARK 465 GLY A 1084 REMARK 465 ALA A 1085 REMARK 465 THR A 1086 REMARK 465 SER A 1087 REMARK 465 ASP A 1088 REMARK 465 GLU A 1089 REMARK 465 GLU A 1090 REMARK 465 ASP A 1091 REMARK 465 GLU A 1092 REMARK 465 GLU A 1093 REMARK 465 SER A 1094 REMARK 465 SER A 1095 REMARK 465 HIS A 1096 REMARK 465 GLU A 1097 REMARK 465 ASP A 1098 REMARK 465 THR A 1099 REMARK 465 GLU A 1100 REMARK 465 ASN A 1101 REMARK 465 VAL A 1102 REMARK 465 ILE A 1103 REMARK 465 ASN A 1104 REMARK 465 GLY A 1105 REMARK 465 PRO A 1106 REMARK 465 GLY A 1179 REMARK 465 ASN A 1180 REMARK 465 VAL A 1181 REMARK 465 PRO A 1182 REMARK 465 ASN A 1183 REMARK 465 LYS A 1184 REMARK 465 GLY A 1185 REMARK 465 SER A 1186 REMARK 465 LYS A 1187 REMARK 465 THR A 1188 REMARK 465 LYS A 1189 REMARK 465 GLY A 1190 REMARK 465 LYS A 1191 REMARK 465 GLY A 1192 REMARK 465 LYS A 1193 REMARK 465 ARG A 1194 REMARK 465 LYS A 1195 REMARK 465 LEU A 1196 REMARK 465 VAL A 1197 REMARK 465 ASP A 1198 REMARK 465 ASP A 1199 REMARK 465 GLU A 1200 REMARK 465 ASP A 1201

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 484 O

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 427 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO A 659 CA - C - O ANGL. DEV. = 29.3 DEGREES REMARK 500 GLY A1178 CA - C - O ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 420 99.71 -7.58 REMARK 500 THR A 437 -161.05 -101.47 REMARK 500 LEU A 547 -76.56 -45.49 REMARK 500 GLN A 553 -70.68 -34.52 REMARK 500 LYS A 570 -67.76 -94.06 REMARK 500 THR A 572 146.39 147.61 REMARK 500 LEU A 605 -71.63 -94.15 REMARK 500 GLU A 658 77.73 -115.94 REMARK 500 ASN A 677 -24.49 -18.84 REMARK 500 SER A 755 -119.62 -92.25 REMARK 500 ASP A 809 48.52 37.32 REMARK 500 VAL A 813 -159.27 -110.58 REMARK 500 SER A 921 74.26 -118.25 REMARK 500 PRO A 928 116.18 -39.93 REMARK 500 ASP A 938 -95.95 -88.14 REMARK 500 LYS A 942 89.62 -167.78 REMARK 500 ASN A 974 49.33 -141.50 REMARK 500 ASN A1042 14.59 51.66 REMARK 500 LEU A1116 -67.65 -100.96 REMARK 500 LYS A1126 -72.66 -65.21 REMARK 500 ARG A1177 43.08 -100.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 676 11.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP A 653 21.1 L L OUTSIDE RANGE REMARK 500 LEU A 654 21.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL

DBREF 1BJT A 409 1201 UNP P06786 TOP2_YEAST 409 1201

SEQADV 1BJT LEU A 547 UNP P06786 PRO 547 CONFLICT

SEQRES 1 A 793 GLU ASN ALA LEU LYS LYS SER ASP GLY THR ARG LYS SER SEQRES 2 A 793 ARG ILE THR ASN TYR PRO LYS LEU GLU ASP ALA ASN LYS SEQRES 3 A 793 ALA GLY THR LYS GLU GLY TYR LYS CYS THR LEU VAL LEU SEQRES 4 A 793 THR GLU GLY ASP SER ALA LEU SER LEU ALA VAL ALA GLY SEQRES 5 A 793 LEU ALA VAL VAL GLY ARG ASP TYR TYR GLY CYS TYR PRO SEQRES 6 A 793 LEU ARG GLY LYS MET LEU ASN VAL ARG GLU ALA SER ALA SEQRES 7 A 793 ASP GLN ILE LEU LYS ASN ALA GLU ILE GLN ALA ILE LYS SEQRES 8 A 793 LYS ILE MET GLY LEU GLN HIS ARG LYS LYS TYR GLU ASP SEQRES 9 A 793 THR LYS SER LEU ARG TYR GLY HIS LEU MET ILE MET THR SEQRES 10 A 793 ASP GLN ASP HIS ASP GLY SER HIS ILE LYS GLY LEU ILE SEQRES 11 A 793 ILE ASN PHE LEU GLU SER SER PHE LEU GLY LEU LEU ASP SEQRES 12 A 793 ILE GLN GLY PHE LEU LEU GLU PHE ILE THR PRO ILE ILE SEQRES 13 A 793 LYS VAL SER ILE THR LYS PRO THR LYS ASN THR ILE ALA SEQRES 14 A 793 PHE TYR ASN MET PRO ASP TYR GLU LYS TRP ARG GLU GLU SEQRES 15 A 793 GLU SER HIS LYS PHE THR TRP LYS GLN LYS TYR TYR LYS SEQRES 16 A 793 GLY LEU GLY THR SER LEU ALA GLN GLU VAL ARG GLU TYR SEQRES 17 A 793 PHE SER ASN LEU ASP ARG HIS LEU LYS ILE PHE HIS SER SEQRES 18 A 793 LEU GLN GLY ASN ASP LYS ASP TYR ILE ASP LEU ALA PHE SEQRES 19 A 793 SER LYS LYS LYS ALA ASP ASP ARG LYS GLU TRP LEU ARG SEQRES 20 A 793 GLN TYR GLU PRO GLY THR VAL LEU ASP PRO THR LEU LYS SEQRES 21 A 793 GLU ILE PRO ILE SER ASP PHE ILE ASN LYS GLU LEU ILE SEQRES 22 A 793 LEU PHE SER LEU ALA ASP ASN ILE ARG SER ILE PRO ASN SEQRES 23 A 793 VAL LEU ASP GLY PHE LYS PRO GLY GLN ARG LYS VAL LEU SEQRES 24 A 793 TYR GLY CYS PHE LYS LYS ASN LEU LYS SER GLU LEU LYS SEQRES 25 A 793 VAL ALA GLN LEU ALA PRO TYR VAL SER GLU CYS THR ALA SEQRES 26 A 793 TYR HIS HIS GLY GLU GLN SER LEU ALA GLN THR ILE ILE SEQRES 27 A 793 GLY LEU ALA GLN ASN PHE VAL GLY SER ASN ASN ILE TYR SEQRES 28 A 793 LEU LEU LEU PRO ASN GLY ALA PHE GLY THR ARG ALA THR SEQRES 29 A 793 GLY GLY LYS ASP ALA ALA ALA ALA ARG TYR ILE TYR THR SEQRES 30 A 793 GLU LEU ASN LYS LEU THR ARG LYS ILE PHE HIS PRO ALA SEQRES 31 A 793 ASP ASP PRO LEU TYR LYS TYR ILE GLN GLU ASP GLU LYS SEQRES 32 A 793 THR VAL GLU PRO GLU TRP TYR LEU PRO ILE LEU PRO MET SEQRES 33 A 793 ILE LEU VAL ASN GLY ALA GLU GLY ILE GLY THR GLY TRP SEQRES 34 A 793 SER THR TYR ILE PRO PRO PHE ASN PRO LEU GLU ILE ILE SEQRES 35 A 793 LYS ASN ILE ARG HIS LEU MET ASN ASP GLU GLU LEU GLU SEQRES 36 A 793 GLN MET HIS PRO TRP PHE ARG GLY TRP THR GLY THR ILE SEQRES 37 A 793 GLU GLU ILE GLU PRO LEU ARG TYR ARG MET TYR GLY ARG SEQRES 38 A 793 ILE GLU GLN ILE GLY ASP ASN VAL LEU GLU ILE THR GLU SEQRES 39 A 793 LEU PRO ALA ARG THR TRP THR SER THR ILE LYS GLU TYR SEQRES 40 A 793 LEU LEU LEU GLY LEU SER GLY ASN ASP LYS ILE LYS PRO SEQRES 41 A 793 TRP ILE LYS ASP MET GLU GLU GLN HIS ASP ASP ASN ILE SEQRES 42 A 793 LYS PHE ILE ILE THR LEU SER PRO GLU GLU MET ALA LYS SEQRES 43 A 793 THR ARG LYS ILE GLY PHE TYR GLU ARG PHE LYS LEU ILE SEQRES 44 A 793 SER PRO ILE SER LEU MET ASN MET VAL ALA PHE ASP PRO SEQRES 45 A 793 HIS GLY LYS ILE LYS LYS TYR ASN SER VAL ASN GLU ILE SEQRES 46 A 793 LEU SER GLU PHE TYR TYR VAL ARG LEU GLU TYR TYR GLN SEQRES 47 A 793 LYS ARG LYS ASP HIS MET SER GLU ARG LEU GLN TRP GLU SEQRES 48 A 793 VAL GLU LYS TYR SER PHE GLN VAL LYS PHE ILE LYS MET SEQRES 49 A 793 ILE ILE GLU LYS GLU LEU THR VAL THR ASN LYS PRO ARG SEQRES 50 A 793 ASN ALA ILE ILE GLN GLU LEU GLU ASN LEU GLY PHE PRO SEQRES 51 A 793 ARG PHE ASN LYS GLU GLY LYS PRO TYR TYR GLY SER PRO SEQRES 52 A 793 ASN ASP GLU ILE ALA GLU GLN ILE ASN ASP VAL LYS GLY SEQRES 53 A 793 ALA THR SER ASP GLU GLU ASP GLU GLU SER SER HIS GLU SEQRES 54 A 793 ASP THR GLU ASN VAL ILE ASN GLY PRO GLU GLU LEU TYR SEQRES 55 A 793 GLY THR TYR GLU TYR LEU LEU GLY MET ARG ILE TRP SER SEQRES 56 A 793 LEU THR LYS GLU ARG TYR GLN LYS LEU LEU LYS GLN LYS SEQRES 57 A 793 GLN GLU LYS GLU THR GLU LEU GLU ASN LEU LEU LYS LEU SEQRES 58 A 793 SER ALA LYS ASP ILE TRP ASN THR ASP LEU LYS ALA PHE SEQRES 59 A 793 GLU VAL GLY TYR GLN GLU PHE LEU GLN ARG ASP ALA GLU SEQRES 60 A 793 ALA ARG GLY GLY ASN VAL PRO ASN LYS GLY SER LYS THR SEQRES 61 A 793 LYS GLY LYS GLY LYS ARG LYS LEU VAL ASP ASP GLU ASP

FORMUL 2 HOH *217(H2 O)

HELIX 1 1 LYS A 438 LYS A 442 5 5 HELIX 2 2 ASP A 451 VAL A 464 1 14 HELIX 3 3 ASN A 492 MET A 502 1 11 HELIX 4 4 ILE A 534 SER A 545 1 12 HELIX 5 5 MET A 581 GLU A 590 1 10 HELIX 6 6 THR A 607 SER A 629 5 23 HELIX 7 7 ASN A 677 SER A 691 5 15 HELIX 8 8 PRO A 701 LYS A 713 1 13 HELIX 9 9 VAL A 721 THR A 732 1 12 HELIX 10 10 LEU A 741 ALA A 749 1 9 HELIX 11 11 ALA A 780 TYR A 782 5 3 HELIX 12 12 THR A 791 ILE A 794 1 4 HELIX 13 13 PRO A 797 LEU A 802 5 6 HELIX 14 14 MET A 824 VAL A 827 1 4 HELIX 15 15 PRO A 846 MET A 857 1 12 HELIX 16 16 THR A 909 LEU A 920 1 12 HELIX 17 17 PRO A 949 ILE A 958 1 10 HELIX 18 18 PHE A 960 ARG A 963 1 4 HELIX 19 19 VAL A 990 ILE A 1034 1 45 HELIX 20 20 ARG A 1045 ASN A 1054 1 10 HELIX 21 21 GLU A 1114 LEU A 1117 1 4 HELIX 22 22 ILE A 1121 LEU A 1124 5 4 HELIX 23 23 LYS A 1126 LEU A 1147 1 22 HELIX 24 24 ALA A 1151 ALA A 1176 1 26

SHEET 1 A 4 LEU A 556 GLU A 558 0 SHEET 2 A 4 HIS A 520 THR A 525 1 N LEU A 521 O LEU A 557 SHEET 3 A 4 THR A 444 GLU A 449 1 N LEU A 445 O HIS A 520 SHEET 4 A 4 TYR A 469 ARG A 475 1 N GLY A 470 O THR A 444 SHEET 1 B 3 ASN A 574 PHE A 578 0 SHEET 2 B 3 ILE A 564 ILE A 568 -1 N ILE A 568 O ASN A 574 SHEET 3 B 3 TRP A 597 GLN A 599 -1 N LYS A 598 O SER A 567 SHEET 1 C 2 LEU A 761 ASN A 764 0 SHEET 2 C 2 TYR A 784 LEU A 787 -1 N GLU A 786 O LEU A 762 SHEET 1 D 2 ALA A 830 ILE A 833 0 SHEET 2 D 2 SER A 838 ILE A 841 -1 N ILE A 841 O ALA A 830 SHEET 1 E 3 ILE A 967 SER A 971 0 SHEET 2 E 3 ARG A 883 TYR A 887 -1 N MET A 886 O SER A 968 SHEET 3 E 3 THR A 875 GLU A 880 -1 N GLU A 880 O ARG A 883 SHEET 1 F 4 ASP A 932 GLU A 935 0 SHEET 2 F 4 PHE A 943 THR A 946 -1 N THR A 946 O ASP A 932 SHEET 3 F 4 VAL A 897 GLU A 902 -1 N ILE A 900 O PHE A 943 SHEET 4 F 4 ARG A 889 GLN A 892 -1 N GLU A 891 O GLU A 899 SHEET 1 G 2 MET A 975 PHE A 978 0 SHEET 2 G 2 ILE A 984 TYR A 987 -1 N TYR A 987 O MET A 975

CRYST1 103.400 145.700 161.300 90.00 90.00 90.00 C 2 2 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.009671 0.000000 0.000000 0.00000

SCALE2 0.000000 0.006863 0.000000 0.00000

SCALE3 0.000000 0.000000 0.006200 0.00000