10 20 30 40 50 60 70 80 1BJ2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 02-JUL-98 1BJ2
TITLE RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, TITLE 2 NMR, 8 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP COMPND 4 *CP*C)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE LOOP-LOOP COMPLEX HAS INVERTED LOOP COMPND 8 SEQUENCE; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C) COMPND 12 -3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: THE LOOP-LOOP COMPLEX HAS INVERTED LOOP COMPND 16 SEQUENCE
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES
KEYWDS COLE1 RNA, NMR, LOOP-LOOP COMPLEX, KISS COMPLEX, KEYWDS 2 RIBONUCLEIC ACID
EXPDTA SOLUTION NMR
NUMMDL 8
AUTHOR A.J.LEE,D.M.CROTHERS
REVDAT 3 24-FEB-09 1BJ2 1 VERSN REVDAT 2 30-MAR-99 1BJ2 1 SOURCE COMPND REMARK TITLE REVDAT 2 2 1 JRNL KEYWDS HEADER REVDAT 1 02-FEB-99 1BJ2 0
JRNL AUTH A.J.LEE,D.M.CROTHERS JRNL TITL THE SOLUTION STRUCTURE OF AN RNA LOOP-LOOP JRNL TITL 2 COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE. JRNL REF STRUCTURE V. 6 993 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9739090 JRNL DOI 10.1016/S0969-2126(98)00101-4
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1BJ2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 25 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, DQF-COSY, 15N/14N REMARK 210 SELECTED NOESY, 13C/12C REMARK 210 SELECTED NOESY, HCCH-COSY, REMARK 210 31P, MQHCN, 13C-HMQC, 15N-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY+, OMEGA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, GE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : TORSION ANGLE MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO EXPERIMENTAL DATA REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: FOR REPRESENTATIVE MODEL, SEE 2BJ2. THE STRUCTURE WAS REMARK 210 DETERMINED USING DOUBLE AND TRIPLE RESONANCE NMR SPECTROSCOPY REMARK 210 ON 13C, 15N LABELED RNA.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 6 C B 10 C4 C B 10 N4 -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 2 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 C A 3 O4' - C1' - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 C A 3 N3 - C4 - C5 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 C A 3 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 C A 3 N3 - C4 - N4 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 A A 5 N1 - C6 - N6 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 C A 6 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 G A 8 N1 - C2 - N3 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 8 N1 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 G A 8 C5 - C6 - O6 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 9 N9 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 1 A A 9 N1 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 G A 11 N1 - C2 - N3 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 G A 11 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 G A 12 N1 - C2 - N3 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 U A 14 O4' - C1' - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 G A 16 N1 - C2 - N3 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 19 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 C A 20 N3 - C4 - C5 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 C A 20 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 C A 21 N3 - C4 - C5 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 G B 1 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 C B 2 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 C B 2 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 C B 5 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 C B 5 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 G B 6 N1 - C2 - N3 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 G B 6 N3 - C2 - N2 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 G B 6 C5 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 A B 8 N9 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 1 A B 8 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 1 C B 9 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 C B 10 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 A B 11 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 C B 13 C6 - N1 - C2 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 C B 14 C6 - N1 - C2 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 C B 14 N3 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 G B 15 N1 - C6 - O6 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 G B 16 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G B 16 N3 - C2 - N2 ANGL. DEV. = -6.4 DEGREES REMARK 500 1 G B 18 N1 - C2 - N3 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G B 18 N3 - C2 - N2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 G B 18 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 C B 19 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 C B 19 N3 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 G A 1 C5 - C6 - O6 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 C A 3 C6 - N1 - C2 ANGL. DEV. = -3.0 DEGREES REMARK 500 2 C A 3 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 A A 4 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 430 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJ2 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE
DBREF 1BJ2 A 1 21 PDB 1BJ2 1BJ2 1 21 DBREF 1BJ2 B 1 19 PDB 1BJ2 1BJ2 1 19
SEQRES 1 A 21 G G C A A C G G A U G G U SEQRES 2 A 21 U C G U U G C C SEQRES 1 B 19 G C A C C G A A C C A U C SEQRES 2 B 19 C G G U G C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000