1BGZ - Header Asymmetric Unit

HEADER RNA 03-JUN-98 1BGZ

TITLE S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 16S RRNA BINDING SITE FOR S8; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RNA HAIRPIN

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS RIBONUCLEIC ACID, 16S RRNA, INTERNAL LOOP, BASE TRIPLE

EXPDTA SOLUTION NMR

NUMMDL 6

AUTHOR K.KALURACHCHI,E.P.NIKONOWICZ

REVDAT 2 24-FEB-09 1BGZ 1 VERSN REVDAT 1 13-JAN-99 1BGZ 0

JRNL AUTH K.KALURACHCHI,E.P.NIKONOWICZ JRNL TITL NMR STRUCTURE DETERMINATION OF THE BINDING SITE JRNL TITL 2 FOR RIBOSOMAL PROTEIN S8 FROM ESCHERICHIA COLI 16 JRNL TITL 3 S RRNA. JRNL REF J.MOL.BIOL. V. 280 639 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9677294 JRNL DOI 10.1006/JMBI.1998.1915

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.A.ZIMMERMANN,K.SINGH-BERGMANN REMARK 1 TITL BINDING SITES FOR RIBOSOMAL PROTEINS S8 AND S15 IN REMARK 1 TITL 2 THE 16 S RNA OF ESCHERICHIA COLI REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 563 422 1979 REMARK 1 REFN ISSN 0006-3002

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE.

REMARK 4 REMARK 4 1BGZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 10MM NACL, 10MM POTASSIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : H2O/D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, CT-HSQC, COSY, HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 6 REMARK 210 CONFORMERS, SELECTION CRITERIA : FEWEST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: 2D AND 3D DOUBLE AND TRIPLE RESONANCE EXPERIMENTS WERE REMARK 210 USED TO OBTAIN DISTANCE AND TORSION ANGLE CONSTRAINTS.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 17 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 18 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 17 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 A A 18 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 109 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

DBREF 1BGZ A 1 23 PDB 1BGZ 1BGZ 1 23

SEQRES 1 A 23 G G G A U A C U G C U U C SEQRES 2 A 23 G G U A A G U C C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000