1BFW - Header Asymmetric Unit

HEADER VIRAL PROTEIN 22-MAY-98 1BFW

TITLE RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND- TITLE 2 MOUTH-DISEASE (FMD) VIRUS, NMR, 10 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE MAJOR IMMUNOGEN REGION, RESIDUES 141-159; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RETRO-INVERSO PEPTIDE CORRESPONDING TO THE COMPND 7 MAJOR IMMUNOGEN REGION OF THE FOOT-AND-MOUTH-DISEASE VIRUS COMPND 8 CAPSID

SOURCE MOL_ID: 1

KEYWDS CAPSID, PEPTIDOMIMETIC, RETRO-INVERSO, FMDV, ANTIGEN, VIRAL KEYWDS 2 PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR M.C.PETIT,N.BENKIRANE,G.GUICHARD,A.PHAN CHAN DU,M.T.CUNG, AUTHOR 2 J.P.BRIAND,S.MULLER

REVDAT 2 24-FEB-09 1BFW 1 VERSN REVDAT 1 13-JAN-99 1BFW 0

JRNL AUTH M.C.PETIT,N.BENKIRANE,G.GUICHARD,A.P.DU,M.MARRAUD, JRNL AUTH 2 M.T.CUNG,J.P.BRIAND,S.MULLER JRNL TITL SOLUTION STRUCTURE OF A RETRO-INVERSO PEPTIDE JRNL TITL 2 ANALOGUE MIMICKING THE FOOT-AND-MOUTH DISEASE JRNL TITL 3 VIRUS MAJOR ANTIGENIC SITE. STRUCTURAL BASIS FOR JRNL TITL 4 ITS ANTIGENIC CROSS-REACTIVITY WITH THE PARENT JRNL TITL 5 PEPTIDE. JRNL REF J.BIOL.CHEM. V. 274 3686 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 9920919 JRNL DOI 10.1074/JBC.274.6.3686

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.4 REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINT ENERGY MINIMIZATION

REMARK 4 REMARK 4 1BFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : 0.1 M PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O:10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY, TOCSY NOESY, ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : DRX400 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 ANNEALING, MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINTS VIOLATIONS, REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1BFW A 159 140 PDB 1BFW 1BFW 159 140

SEQRES 1 A 20 LML DGN DAR DAL DVA DAR DPR DAL DLE DSN GLY DPN DAS SEQRES 2 A 20 GLY DAR DVA GLY DSN GLY NH2

HET LML A 159 20 HET DGN A 158 17 HET DAR A 157 23 HET DAL A 156 10 HET DVA A 155 16 HET DAR A 154 23 HET DPR A 153 14 HET DAL A 152 10 HET DLE A 151 19 HET DSN A 150 11 HET DPN A 148 20 HET DAS A 147 13 HET DAR A 145 23 HET DVA A 144 16 HET DSN A 142 11 HET NH2 A 140 3

HETNAM LML ISOBUTYL MALONIC ACID HETNAM DGN D-GLUTAMINE HETNAM DAR D-ARGININE HETNAM DAL D-ALANINE HETNAM DVA D-VALINE HETNAM DPR D-PROLINE HETNAM DLE D-LEUCINE HETNAM DSN D-SERINE HETNAM DPN D-PHENYLALANINE HETNAM DAS D-ASPARTIC ACID HETNAM NH2 AMINO GROUP

FORMUL 1 LML C7 H12 O4 FORMUL 1 DGN C5 H10 N2 O3 FORMUL 1 DAR 3(C6 H15 N4 O2 1+) FORMUL 1 DAL 2(C3 H7 N O2) FORMUL 1 DVA 2(C5 H11 N O2) FORMUL 1 DPR C5 H9 N O2 FORMUL 1 DLE C6 H13 N O2 FORMUL 1 DSN 2(C3 H7 N O3) FORMUL 1 DPN C9 H11 N O2 FORMUL 1 DAS C4 H7 N O4 FORMUL 1 NH2 H2 N

LINK C LML A 159 N DGN A 158 1555 1555 1.33 LINK C DGN A 158 N DAR A 157 1555 1555 1.33 LINK C DAR A 157 N DAL A 156 1555 1555 1.33 LINK C DAL A 156 N DVA A 155 1555 1555 1.33 LINK C DVA A 155 N DAR A 154 1555 1555 1.33 LINK C DAR A 154 N DPR A 153 1555 1555 1.36 LINK C DPR A 153 N DAL A 152 1555 1555 1.33 LINK C DAL A 152 N DLE A 151 1555 1555 1.33 LINK C DLE A 151 N DSN A 150 1555 1555 1.33 LINK C DSN A 150 N GLY A 149 1555 1555 1.32 LINK N DPN A 148 C GLY A 149 1555 1555 1.33 LINK C DPN A 148 N DAS A 147 1555 1555 1.33 LINK C DAS A 147 N GLY A 146 1555 1555 1.33 LINK N DAR A 145 C GLY A 146 1555 1555 1.33 LINK C DAR A 145 N DVA A 144 1555 1555 1.33 LINK C DVA A 144 N GLY A 143 1555 1555 1.33 LINK N DSN A 142 C GLY A 143 1555 1555 1.33 LINK C DSN A 142 N GLY A 141 1555 1555 1.33 LINK N NH2 A 140 C GLY A 141 1555 1555 1.33

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000