10 20 30 40 50 60 70 80 1AU6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 11-SEP-97 1AU6
TITLE SOLUTION STRUCTURE OF DNA D(CATGCATG) INTERSTRAND- TITLE 2 CROSSLINKED BY BISPLATIN COMPOUND (1,1/T,T), NMR, TITLE 3 MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: BISPLATINUM COMPOUND (1,1/T,T) INTERSTRAND- COMPND 6 CROSSLINKED DNA OCTAMER
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS BISPLATINUM COMPOUND (1,1/T,T), DNA, INTERSTRAND CROSSLINK, KEYWDS 2 DUMBBELL STRUCTURE, DEOXYRIBONUCLEIC ACID
EXPDTA SOLUTION NMR
AUTHOR D.YANG,S.S.G.E.VAN BOOM,J.REEDIJK,J.H.VAN BOOM,N.FARRELL, AUTHOR 2 A.H.-J.WANG
REVDAT 3 24-FEB-09 1AU6 1 VERSN REVDAT 2 01-APR-03 1AU6 1 JRNL REVDAT 1 25-FEB-98 1AU6 0
JRNL AUTH D.YANG,S.S.VAN BOOM,J.REEDIJK,J.H.VAN BOOM, JRNL AUTH 2 N.FARRELL,A.H.WANG JRNL TITL A NOVEL DNA STRUCTURE INDUCED BY THE ANTICANCER JRNL TITL 2 BISPLATINUM COMPOUND CROSSLINKED TO A GPC SITE IN JRNL TITL 3 DNA. JRNL REF NAT.STRUCT.BIOL. V. 2 577 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 7664126 JRNL DOI 10.1038/NSB0795-577
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.YANG REMARK 1 REF THESIS 1996 REMARK 1 PUBL URBANA : UNIVERSITY OF ILLINOIS AT REMARK 1 PUBL 2 URBANA-CHAMPAIGN (THESIS) REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH D.YANG,A.H.WANG REMARK 1 TITL STRUCTURAL STUDIES OF INTERACTIONS BETWEEN REMARK 1 TITL 2 ANTICANCER PLATINUM DRUGS AND DNA REMARK 1 REF PROG.BIOPHYS.MOL.BIOL. V. 66 81 1996 REMARK 1 REFN ISSN 0079-6107
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1AU6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM SOLVENT SYSTEM : H2O/D2O REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D1HNOESY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : VXR500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR, QUANTA REMARK 210 METHOD USED : NOE-RESTRAINED REFINEMENT REMARK 210 SPEDREF REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 3 C5 DT A 3 C7 0.041 REMARK 500 DG A 4 C8 DG A 4 N9 -0.053 REMARK 500 DC A 5 C5' DC A 5 C4' 0.100 REMARK 500 DC A 5 C5 DC A 5 C6 0.053 REMARK 500 DA A 6 C3' DA A 6 C2' -0.052 REMARK 500 DA A 6 N9 DA A 6 C4 -0.040 REMARK 500 DT A 7 C5 DT A 7 C7 0.044 REMARK 500 DT B 11 C5 DT B 11 C7 0.042 REMARK 500 DG B 12 C8 DG B 12 N9 -0.053 REMARK 500 DC B 13 C5' DC B 13 C4' 0.100 REMARK 500 DC B 13 C5 DC B 13 C6 0.053 REMARK 500 DA B 14 C3' DA B 14 C2' -0.052 REMARK 500 DA B 14 N9 DA B 14 C4 -0.040 REMARK 500 DT B 15 C5 DT B 15 C7 0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C5' - C4' - O4' ANGL. DEV. = 7.7 DEGREES REMARK 500 DC A 1 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 2 C5' - C4' - O4' ANGL. DEV. = 13.0 DEGREES REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT A 3 C5' - C4' - O4' ANGL. DEV. = 7.8 DEGREES REMARK 500 DT A 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT A 3 C4 - C5 - C7 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT A 3 C6 - C5 - C7 ANGL. DEV. = -6.1 DEGREES REMARK 500 DT A 3 O3' - P - O5' ANGL. DEV. = -12.4 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG A 4 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC A 5 C5' - C4' - C3' ANGL. DEV. = 7.4 DEGREES REMARK 500 DC A 5 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC A 5 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 4 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DA A 6 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DA A 6 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 9.9 DEGREES REMARK 500 DA A 6 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA A 6 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT A 7 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG A 8 O4' - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG A 8 O4' - C1' - N9 ANGL. DEV. = 9.7 DEGREES REMARK 500 DT A 7 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B 9 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 DC B 9 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA B 10 C5' - C4' - O4' ANGL. DEV. = 13.0 DEGREES REMARK 500 DA B 10 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 11 C5' - C4' - O4' ANGL. DEV. = 7.8 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT B 11 C4 - C5 - C7 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT B 11 C6 - C5 - C7 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT B 11 O3' - P - O5' ANGL. DEV. = -12.4 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B 12 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC B 13 C5' - C4' - C3' ANGL. DEV. = 7.4 DEGREES REMARK 500 DC B 13 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC B 13 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 12 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DA B 14 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DA B 14 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA B 14 O4' - C1' - N9 ANGL. DEV. = 10.0 DEGREES REMARK 500 DA B 14 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA B 14 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 15 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG B 16 O4' - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 9.7 DEGREES REMARK 500 DT B 15 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 4 0.10 SIDE_CHAIN REMARK 500 DA A 6 0.07 SIDE_CHAIN REMARK 500 DG B 12 0.10 SIDE_CHAIN REMARK 500 DA B 14 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BPT A 17
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPT A 17
DBREF 1AU6 A 1 8 PDB 1AU6 1AU6 1 8 DBREF 1AU6 B 9 16 PDB 1AU6 1AU6 9 16
SEQRES 1 A 8 DC DA DT DG DC DA DT DG SEQRES 1 B 8 DC DA DT DG DC DA DT DG
HET BPT A 17 36
HETNAM BPT BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO) HETNAM 2 BPT COMPLEX
HETSYN BPT 1,1/T,T
FORMUL 3 BPT C4 H24 CL2 N6 PT2
LINK PT1 BPT A 17 N7 DG A 4 1555 1555 1.99 LINK PT2 BPT A 17 N7 DG B 12 1555 1555 1.99
SITE 1 AC1 6 DA A 2 DT A 3 DG A 4 DA B 10 SITE 2 AC1 6 DT B 11 DG B 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000