10 20 30 40 50 60 70 80 1ARF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION REGULATION 01-OCT-93 1ARF
TITLE STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: TITLE 2 IMPLICATIONS FOR DNA BINDING
COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST TRANSCRIPTION FACTOR ADR1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932
KEYWDS TRANSCRIPTION REGULATION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR R.C.HOFFMAN,R.X.XU,S.J.HORVATH,J.R.HERRIOTT,R.E.KLEVIT
REVDAT 2 24-FEB-09 1ARF 1 VERSN REVDAT 1 31-JAN-94 1ARF 0
JRNL AUTH R.C.HOFFMAN,S.J.HORVATH,R.E.KLEVIT JRNL TITL STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER JRNL TITL 2 DOMAINS: IMPLICATIONS FOR DNA BINDING. JRNL REF PROTEIN SCI. V. 2 951 1993 JRNL REFN ISSN 0961-8368 JRNL PMID 8318900
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.HOFFMAN,R.X.XU,R.E.KLEVIT,J.R.HERRIOTT REMARK 1 TITL A SIMPLE METHOD FOR THE REFINEMENT OF MODELS REMARK 1 TITL 2 DERIVED FROM NMR DATA DEMONSTRATED ON A ZINC REMARK 1 TITL 3 FINGER DOMAIN FROM YEAST ADR1 REMARK 1 REF J.MAGN.RESON. V. 102 61 1993 REMARK 1 REFN ISSN 0022-2364
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ARF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 103 -172.48 -57.63 REMARK 500 1 THR A 110 23.48 41.39 REMARK 500 2 SER A 103 -146.82 -61.49 REMARK 500 2 CYS A 109 -61.71 -92.54 REMARK 500 2 THR A 110 -17.27 138.01 REMARK 500 2 ASN A 128 83.18 -175.21 REMARK 500 2 GLU A 129 96.02 -25.68 REMARK 500 3 THR A 110 39.42 99.67 REMARK 500 3 PHE A 113 -87.59 -120.23 REMARK 500 3 ALA A 114 -54.27 175.18 REMARK 500 3 ASN A 128 98.69 177.64 REMARK 500 4 SER A 103 174.08 -46.85 REMARK 500 4 VAL A 108 -63.22 -96.44 REMARK 500 4 THR A 110 4.23 123.61 REMARK 500 4 PHE A 113 -95.26 -132.54 REMARK 500 4 ALA A 114 -60.62 -175.94 REMARK 500 4 THR A 127 -76.58 -107.73 REMARK 500 4 ASN A 128 -61.62 -26.16 REMARK 500 4 GLU A 129 115.80 -13.21 REMARK 500 5 GLU A 107 -14.85 -49.39 REMARK 500 5 VAL A 108 -73.77 -78.02 REMARK 500 5 THR A 127 -73.20 -92.11 REMARK 500 5 ASN A 128 116.92 -174.83 REMARK 500 6 VAL A 108 -64.70 -99.64 REMARK 500 6 THR A 110 -5.85 136.98 REMARK 500 6 PHE A 113 -85.13 -122.05 REMARK 500 6 ALA A 114 -54.21 172.04 REMARK 500 6 ASN A 128 91.44 177.07 REMARK 500 6 GLU A 129 114.95 -9.37 REMARK 500 7 SER A 103 173.89 -48.06 REMARK 500 7 THR A 110 -3.21 132.62 REMARK 500 7 PHE A 113 -96.27 -132.42 REMARK 500 7 ALA A 114 -58.15 -177.80 REMARK 500 7 THR A 127 112.50 173.98 REMARK 500 7 ASN A 128 -142.07 -134.90 REMARK 500 8 THR A 110 30.16 90.06 REMARK 500 8 PHE A 113 -88.27 -122.99 REMARK 500 8 ALA A 114 -53.65 174.34 REMARK 500 8 ASN A 128 121.17 172.54 REMARK 500 9 PHE A 104 118.65 -4.66 REMARK 500 9 GLU A 107 20.18 -77.86 REMARK 500 9 PHE A 113 -96.69 -132.69 REMARK 500 9 ALA A 114 -56.73 -175.77 REMARK 500 9 ASN A 128 -83.81 170.43 REMARK 500 10 PHE A 104 99.17 -6.66 REMARK 500 10 THR A 110 78.86 32.89 REMARK 500 10 ASN A 128 98.95 -177.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 111 0.28 SIDE_CHAIN REMARK 500 1 ARG A 115 0.10 SIDE_CHAIN REMARK 500 1 ARG A 121 0.20 SIDE_CHAIN REMARK 500 1 ARG A 124 0.24 SIDE_CHAIN REMARK 500 2 ARG A 102 0.30 SIDE_CHAIN REMARK 500 2 ARG A 111 0.13 SIDE_CHAIN REMARK 500 2 ARG A 115 0.14 SIDE_CHAIN REMARK 500 2 ARG A 124 0.14 SIDE_CHAIN REMARK 500 3 ARG A 102 0.12 SIDE_CHAIN REMARK 500 3 ARG A 111 0.29 SIDE_CHAIN REMARK 500 3 ARG A 115 0.30 SIDE_CHAIN REMARK 500 4 ARG A 102 0.17 SIDE_CHAIN REMARK 500 4 ARG A 111 0.27 SIDE_CHAIN REMARK 500 4 ARG A 115 0.28 SIDE_CHAIN REMARK 500 4 ARG A 121 0.29 SIDE_CHAIN REMARK 500 4 ARG A 124 0.24 SIDE_CHAIN REMARK 500 5 ARG A 102 0.26 SIDE_CHAIN REMARK 500 5 ARG A 115 0.29 SIDE_CHAIN REMARK 500 5 ARG A 124 0.29 SIDE_CHAIN REMARK 500 6 ARG A 102 0.24 SIDE_CHAIN REMARK 500 6 ARG A 111 0.30 SIDE_CHAIN REMARK 500 6 ARG A 115 0.29 SIDE_CHAIN REMARK 500 6 ARG A 121 0.23 SIDE_CHAIN REMARK 500 7 ARG A 111 0.30 SIDE_CHAIN REMARK 500 7 ARG A 115 0.27 SIDE_CHAIN REMARK 500 7 ARG A 121 0.24 SIDE_CHAIN REMARK 500 7 ARG A 124 0.26 SIDE_CHAIN REMARK 500 8 ARG A 102 0.19 SIDE_CHAIN REMARK 500 8 ARG A 111 0.30 SIDE_CHAIN REMARK 500 8 ARG A 121 0.27 SIDE_CHAIN REMARK 500 8 ARG A 124 0.26 SIDE_CHAIN REMARK 500 9 ARG A 102 0.08 SIDE_CHAIN REMARK 500 9 ARG A 111 0.18 SIDE_CHAIN REMARK 500 9 ARG A 115 0.26 SIDE_CHAIN REMARK 500 9 ARG A 124 0.20 SIDE_CHAIN REMARK 500 10 ARG A 111 0.29 SIDE_CHAIN REMARK 500 10 ARG A 115 0.16 SIDE_CHAIN REMARK 500 10 ARG A 121 0.25 SIDE_CHAIN REMARK 500 10 ARG A 124 0.29 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 HIS A 122 NE2 102.2 REMARK 620 3 HIS A 126 NE2 103.0 94.3 REMARK 620 4 CYS A 109 SG 117.6 88.4 137.7 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1
DBREF 1ARF A 102 130 UNP P07248 ADR1_YEAST 102 130
SEQADV 1ARF TYR A 118 UNP P07248 HIS 118 CONFLICT
SEQRES 1 A 29 ARG SER PHE VAL CYS GLU VAL CYS THR ARG ALA PHE ALA SEQRES 2 A 29 ARG GLN GLU TYR LEU LYS ARG HIS TYR ARG SER HIS THR SEQRES 3 A 29 ASN GLU LYS
HET ZN A 1 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 AAA GLN A 116 HIS A 126 1ALPHA AND 3/10 HELICAL H-BONDS 11
SHEET 1 BBB 2 PHE A 104 CYS A 106 0 SHEET 2 BBB 2 THR A 110 PHE A 113 -1
LINK ZN ZN A 1 SG CYS A 106 1555 1555 2.31 LINK ZN ZN A 1 NE2 HIS A 122 1555 1555 1.99 LINK ZN ZN A 1 NE2 HIS A 126 1555 1555 2.00 LINK ZN ZN A 1 SG CYS A 109 1555 1555 2.28
SITE 1 AC1 5 CYS A 106 VAL A 108 CYS A 109 HIS A 122 SITE 2 AC1 5 HIS A 126
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000