1AOT - Header Asymmetric Unit

HEADER COMPLEX (PROTO-ONCOGENE/EARLY PROTEIN) 10-JUL-97 1AOT

TITLE NMR STRUCTURE OF THE FYN SH2 DOMAIN COMPLEXED WITH A TITLE 2 PHOSPHOTYROSYL PEPTIDE, MINIMIZED AVERAGE STRUCTURE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYN PROTEIN-TYROSINE KINASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: SRC HOMOLOGY 2 DOMAIN; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHOTYROSYL PEPTIDE; COMPND 11 CHAIN: P

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: LYSS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRK172; SOURCE 12 EXPRESSION_SYSTEM_GENE: LYSS; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HAMSTER POLYOMAVIRUS; SOURCE 15 ORGANISM_TAXID: 10626

KEYWDS SH2 DOMAIN, SIGNAL TRANSDUCTION, PEPTIDE COMPLEX, COMPLEX KEYWDS 2 (PROTO-ONCOGENE/EARLY PROTEIN)

EXPDTA SOLUTION NMR

AUTHOR T.D.MULHERN,G.L.SHAW,C.J.MORTON,A.J.DAY,I.D.CAMPBELL

REVDAT 2 24-FEB-09 1AOT 1 VERSN REVDAT 1 14-JAN-98 1AOT 0

JRNL AUTH T.D.MULHERN,G.L.SHAW,C.J.MORTON,A.J.DAY, JRNL AUTH 2 I.D.CAMPBELL JRNL TITL THE SH2 DOMAIN FROM THE TYROSINE KINASE FYN IN JRNL TITL 2 COMPLEX WITH A PHOSPHOTYROSYL PEPTIDE REVEALS JRNL TITL 3 INSIGHTS INTO DOMAIN STABILITY AND BINDING JRNL TITL 4 SPECIFICITY. JRNL REF STRUCTURE V. 5 1313 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9351806 JRNL DOI 10.1016/S0969-2126(97)00283-9

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.PINTAR,M.HENSMANN,K.JUMEL,M.PITKEATHLY, REMARK 1 AUTH 2 S.E.HARDING,I.D.CAMPBELL REMARK 1 TITL SOLUTION STUDIES OF THE SH2 DOMAIN FROM THE FYN REMARK 1 TITL 2 TYROSINE KINASE: SECONDARY STRUCTURE, BACKBONE REMARK 1 TITL 3 DYNAMICS AND PROTEIN ASSOCIATION REMARK 1 REF EUR.BIOPHYS.J. V. 24 371 1996 REMARK 1 REFN ISSN 0175-7571

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE.

REMARK 4 REMARK 4 1AOT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, DQF-COSY, TOCSY, HSQC, REMARK 210 NOESY-HSQC, TOCSY-HSQC, REMARK 210 CBCA(CO)NH, HCCH-TOCSY, XF- REMARK 210 NOESY, XF-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : OMEGA REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE F 2 -167.89 -54.56 REMARK 500 ALA F 4 26.97 44.55 REMARK 500 GLU F 5 41.13 -179.53 REMARK 500 GLU F 6 -69.08 -162.31 REMARK 500 LYS F 11 69.30 -105.44 REMARK 500 PHE F 24 110.71 57.68 REMARK 500 PRO F 27 -159.14 -78.14 REMARK 500 ARG F 34 158.71 177.58 REMARK 500 ASP F 52 44.22 -85.10 REMARK 500 MET F 53 20.41 -161.80 REMARK 500 LYS F 54 -29.63 -174.73 REMARK 500 LYS F 59 -166.62 -104.22 REMARK 500 ALA F 94 -20.16 93.19 REMARK 500 LEU F 100 -175.23 -49.02 REMARK 500 PRO F 103 -159.92 -78.03 REMARK 500 PRO P 208 -169.97 -78.20 REMARK 500 ILE P 209 31.16 -175.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG F 19 0.09 SIDE_CHAIN REMARK 500 ARG F 28 0.22 SIDE_CHAIN REMARK 500 ARG F 34 0.14 SIDE_CHAIN REMARK 500 ARG F 48 0.13 SIDE_CHAIN REMARK 500 ARG F 76 0.31 SIDE_CHAIN REMARK 500 ARG F 92 0.29 SIDE_CHAIN REMARK 500 ARG F 99 0.20 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: PTR REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: PHOSPHOTYROSINE BINDING SITE. REMARK 800 SITE_IDENTIFIER: 3IB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: +3 ILE BINDING SITE.

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AOU RELATED DB: PDB

DBREF 1AOT F 1 106 UNP P06241 FYN_HUMAN 142 247 DBREF 1AOT P 201 211 UNP P03079 TAMI_POVHA 321 331

SEQADV 1AOT SER F 97 UNP P06241 CYS 238 ENGINEERED SEQADV 1AOT SER F 98 UNP P06241 CYS 239 ENGINEERED SEQADV 1AOT SER F 104 UNP P06241 CYS 245 ENGINEERED

SEQRES 1 F 106 SER ILE GLN ALA GLU GLU TRP TYR PHE GLY LYS LEU GLY SEQRES 2 F 106 ARG LYS ASP ALA GLU ARG GLN LEU LEU SER PHE GLY ASN SEQRES 3 F 106 PRO ARG GLY THR PHE LEU ILE ARG GLU SER GLU THR THR SEQRES 4 F 106 LYS GLY ALA TYR SER LEU SER ILE ARG ASP TRP ASP ASP SEQRES 5 F 106 MET LYS GLY ASP HIS VAL LYS HIS TYR LYS ILE ARG LYS SEQRES 6 F 106 LEU ASP ASN GLY GLY TYR TYR ILE THR THR ARG ALA GLN SEQRES 7 F 106 PHE GLU THR LEU GLN GLN LEU VAL GLN HIS TYR SER GLU SEQRES 8 F 106 ARG ALA ALA GLY LEU SER SER ARG LEU VAL VAL PRO SER SEQRES 9 F 106 HIS LYS SEQRES 1 P 11 GLU PRO GLN PTR GLU GLU ILE PRO ILE TYR LEU

MODRES 1AOT PTR P 204 TYR O-PHOSPHOTYROSINE

HET PTR P 204 24

HETNAM PTR O-PHOSPHOTYROSINE

HETSYN PTR PHOSPHONOTYROSINE

FORMUL 2 PTR C9 H12 N O6 P

HELIX 1 1 ARG F 14 LEU F 22 1 9 HELIX 2 2 LEU F 82 TYR F 89 1 8

SHEET 1 A 2 SER F 46 ARG F 48 0 SHEET 2 A 2 VAL F 58 HIS F 60 -1 N LYS F 59 O ILE F 47 SHEET 1 B 2 ARG F 64 LEU F 66 0 SHEET 2 B 2 GLY F 70 TYR F 72 -1 N TYR F 72 O ARG F 64

LINK N PTR P 204 C GLN P 203 1555 1555 1.31 LINK C PTR P 204 N GLU P 205 1555 1555 1.31

SITE 1 PTR 7 ARG F 34 SER F 36 THR F 38 SER F 44 SITE 2 PTR 7 HIS F 60 TYR F 61 LYS F 62 SITE 1 3IB 5 TYR F 61 ILE F 73 THR F 74 GLY F 95 SITE 2 3IB 5 LEU F 96

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000