1AO4 - Header Asymmetric Unit

HEADER INHIBITOR 16-JUL-97 1AO4

TITLE COBALT(III)-PEPLOMYCIN COMPLEX DETERMINED BY NMR STUDIES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUP-3FM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GLYCOSIDE OF ANTIBIOTIC PEPLOMYCIN, PMY-GUP- COMPND 6 3FM. PEPLOMYCIN IS COMPLEXED WITH CO(III)

SOURCE MOL_ID: 1

KEYWDS ANTICANCER DRUGS, PEPLOMYCIN, PEPLEOMYCIN, BLEOMYCIN, DNA, KEYWDS 2 TWO-DIMENSIONAL NMR, SOLUTION STRUCTURES, INHIBITOR

EXPDTA SOLUTION NMR

AUTHOR J.CACERES-CORTES,H.SUGIYAMA,K.IKUDOME,I.SAITO,A.H.-J.WANG

REVDAT 4 24-FEB-09 1AO4 1 VERSN REVDAT 3 01-APR-03 1AO4 1 JRNL REVDAT 2 23-AUG-99 1AO4 1 COMPND REVDAT 1 30-JUL-99 1AO4 0

JRNL AUTH J.CACERES-CORTES,H.SUGIYAMA,K.IKUDOME,I.SAITO, JRNL AUTH 2 A.H.WANG JRNL TITL STRUCTURES OF COBALT(III)-PEPLEOMYCIN AND JRNL TITL 2 COBALT(III)-DEGLYCOPEPLEOMYCIN (GREEN FORMS) JRNL TITL 3 DETERMINED BY NMR STUDIES. JRNL REF EUR.J.BIOCHEM. V. 244 818 1997 JRNL REFN ISSN 0014-2956 JRNL PMID 9108252 JRNL DOI 10.1111/J.1432-1033.1997.00818.X

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, SPEDREF REMARK 3 AUTHORS : A.T.BRUNGER (X-PLOR), (SPEDREF) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION

REMARK 4 REMARK 4 1AO4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-99. REMARK 100 THE RCSB ID CODE IS RCSB001215.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50MM SODIUM PHOSPHATE, 0.15 M REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : VXR 500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: METHOD USED TO DETERMINE THE STRUCTURE : NOE-RMD

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GUP A 1

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 3CO A 4 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3FM A 2 NCA REMARK 620 2 PMY A 3 NJ 90.3 REMARK 620 3 PMY A 3 NH 80.2 94.2 REMARK 620 4 PMY A 3 NG 98.3 171.3 86.1 REMARK 620 5 PMY A 3 NC 95.4 96.6 168.4 83.9 REMARK 620 6 PEO A 5 O1 173.2 87.4 93.6 84.0 91.2 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GUP A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3FM A 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMY A 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CO A 4 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 5

HET GUP A 1 20 HET 3FM A 2 27 HET PMY A 3 142 HET 3CO A 4 1 HET PEO A 5 3

HETNAM GUP ALPHA-L-GULOPYRANOSIDE HETNAM 3FM 3-O-FORMAMIDO-ALPHA-D-MANNOPYRANOSIDE HETNAM PMY AGLYCON OF PEPLOMYCIN HETNAM 3CO COBALT (III) ION HETNAM PEO HYDROGEN PEROXIDE

HETSYN PMY AGLYCON OF (S)-N1-[3-[(1-PHENYLETHYL)AMINO]- HETSYN 2 PMY PROPYL]BLEOMYCINAMIDE

FORMUL 1 GUP C6 H12 O6 FORMUL 1 3FM C7 H13 N O7 FORMUL 2 PMY C48 H67 N17 O10 S2 FORMUL 3 3CO CO 3+ FORMUL 4 PEO H2 O2

LINK C2 GUP A 1 O1 3FM A 2 1555 1555 1.39 LINK C1 GUP A 1 OH1 PMY A 3 1555 1555 1.43 LINK NCA 3FM A 2 CO 3CO A 4 1555 1555 2.00 LINK NJ PMY A 3 CO 3CO A 4 1555 1555 1.97 LINK NH PMY A 3 CO 3CO A 4 1555 1555 2.00 LINK NG PMY A 3 CO 3CO A 4 1555 1555 1.87 LINK NC PMY A 3 CO 3CO A 4 1555 1555 2.04 LINK CO 3CO A 4 O1 PEO A 5 1555 1555 1.99

SITE 1 AC1 2 3FM A 2 PMY A 3 SITE 1 AC2 3 GUP A 1 PMY A 3 3CO A 4 SITE 1 AC3 4 GUP A 1 3FM A 2 3CO A 4 PEO A 5 SITE 1 AC4 3 3FM A 2 PMY A 3 PEO A 5 SITE 1 AC5 2 PMY A 3 3CO A 4

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000