10 20 30 40 50 60 70 80 1ANF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PERIPLASMIC BINDING PROTEIN 25-JUN-97 1ANF
TITLE MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 CELLULAR_LOCATION: PERIPLASM; SOURCE 6 GENE: MALE
KEYWDS PERIPLASMIC BINDING PROTEIN, SUGAR TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR J.C.SPURLINO,F.A.QUIOCHO
REVDAT 3 13-JUL-11 1ANF 1 VERSN REVDAT 2 24-FEB-09 1ANF 1 VERSN REVDAT 1 24-DEC-97 1ANF 0
SPRSDE 24-DEC-97 1ANF 2MBP
JRNL AUTH F.A.QUIOCHO,J.C.SPURLINO,L.E.RODSETH JRNL TITL EXTENSIVE FEATURES OF TIGHT OLIGOSACCHARIDE BINDING REVEALED JRNL TITL 2 IN HIGH-RESOLUTION STRUCTURES OF THE MALTODEXTRIN JRNL TITL 3 TRANSPORT/CHEMOSENSORY RECEPTOR. JRNL REF STRUCTURE V. 5 997 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9309217 JRNL DOI 10.1016/S0969-2126(97)00253-0
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.SHARFF,L.E.RODSETH,F.A.QUIOCHO REMARK 1 TITL REFINED 1.8-A STRUCTURE REVEALS THE MODE OF BINDING OF REMARK 1 TITL 2 BETA-CYCLODEXTRIN TO THE MALTODEXTRIN BINDING PROTEIN REMARK 1 REF BIOCHEMISTRY V. 32 10553 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.C.SPURLINO,L.E.RODSETH,F.A.QUIOCHO REMARK 1 TITL ATOMIC INTERACTIONS IN PROTEIN-CARBOHYDRATE COMPLEXES. REMARK 1 TITL 2 TRYPTOPHAN RESIDUES IN THE PERIPLASMIC MALTODEXTRIN RECEPTOR REMARK 1 TITL 3 FOR ACTIVE TRANSPORT AND CHEMOTAXIS REMARK 1 REF J.MOL.BIOL. V. 226 15 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.J.SHARFF,L.E.RODSETH,J.C.SPURLINO,F.A.QUIOCHO REMARK 1 TITL CRYSTALLOGRAPHIC EVIDENCE OF A LARGE LIGAND-INDUCED REMARK 1 TITL 2 HINGE-TWIST MOTION BETWEEN THE TWO DOMAINS OF THE REMARK 1 TITL 3 MALTODEXTRIN BINDING PROTEIN INVOLVED IN ACTIVE TRANSPORT REMARK 1 TITL 4 AND CHEMOTAXIS REMARK 1 REF BIOCHEMISTRY V. 31 10657 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.C.SPURLINO,G.Y.LU,F.A.QUIOCHO REMARK 1 TITL THE 2.3-A RESOLUTION STRUCTURE OF THE MALTOSE-OR REMARK 1 TITL 2 MALTODEXTRIN-BINDING PROTEIN, A PRIMARY RECEPTOR OF REMARK 1 TITL 3 BACTERIAL ACTIVE TRANSPORT AND CHEMOTAXIS REMARK 1 REF J.BIOL.CHEM. V. 266 5202 1991 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 34825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.026 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.055 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.078 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.014 ; 0.015 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.160 ; 0.100 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.207 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.252 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : 0.224 ; 0.500 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.500 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 21.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 26.100; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.540 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.470 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.210 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.750 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR ALSO WAS USED.
REMARK 4 REMARK 4 1ANF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-89 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NA REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS DETECTOR SYSTEM (NIELSEN) REMARK 200 DATA SCALING SOFTWARE : SDMS DETECTOR SYSTEM (NIELSEN) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.09690 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : 0.24400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS WITH 2MBP REMARK 200 SOFTWARE USED: PROTEIN, CHAIN REMARK 200 STARTING MODEL: PDB ENTRY 2MBP REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 18% PEG REMARK 280 8000, 10 MM CITRATE, PH 6.2
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 SER A 270 OG REMARK 470 LYS A 370 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 419 O HOH A 504 2.02 REMARK 500 CE MET A 204 O HOH A 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA ALA A 84 OH TYR A 341 4547 1.59 REMARK 500 O HOH A 502 O HOH A 504 2657 2.00 REMARK 500 CB ALA A 84 OH TYR A 341 4547 2.04 REMARK 500 N ALA A 84 OH TYR A 341 4547 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 238 CB SER A 238 OG 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 3 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 GLY A 5 C - N - CA ANGL. DEV. = 20.8 DEGREES REMARK 500 TRP A 10 CB - CG - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 TYR A 17 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 17 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 GLU A 28 CG - CD - OE1 ANGL. DEV. = -12.1 DEGREES REMARK 500 GLU A 28 CG - CD - OE2 ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS A 29 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP A 30 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP A 30 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = 10.0 DEGREES REMARK 500 GLU A 38 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 41 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU A 45 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 GLU A 45 OE1 - CD - OE2 ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP A 55 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ILE A 59 CA - CB - CG2 ANGL. DEV. = 18.2 DEGREES REMARK 500 PHE A 61 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ALA A 84 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP A 87 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 99 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 99 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU A 103 CB - CG - CD1 ANGL. DEV. = -15.1 DEGREES REMARK 500 TYR A 117 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 121 CB - CG - CD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASN A 124 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 THR A 128 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 GLU A 131 CG - CD - OE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 LYS A 137 CA - CB - CG ANGL. DEV. = 27.4 DEGREES REMARK 500 ASP A 136 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 LYS A 142 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 MET A 148 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU A 153 OE1 - CD - OE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP A 164 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLY A 165 CA - C - O ANGL. DEV. = -11.1 DEGREES REMARK 500 TYR A 167 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU A 172 CG - CD - OE2 ANGL. DEV. = -12.1 DEGREES REMARK 500 LYS A 175 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR A 176 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 209 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ALA A 231 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 SER A 233 CA - CB - OG ANGL. DEV. = -17.5 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 83 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 2 -116.31 53.74 REMARK 500 GLU A 3 -104.55 61.02 REMARK 500 GLU A 4 -105.79 167.70 REMARK 500 THR A 31 -25.12 -147.76 REMARK 500 ASP A 55 -144.70 -117.08 REMARK 500 LYS A 83 -23.48 -39.31 REMARK 500 ALA A 168 -80.78 -76.71 REMARK 500 ASN A 173 77.53 47.78 REMARK 500 LYS A 239 19.22 59.21 REMARK 500 ASN A 272 32.61 -88.94 REMARK 500 ASP A 296 -71.93 -72.91 REMARK 500 ALA A 312 103.22 -161.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 312 LYS A 313 99.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 354 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA A 312 25.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 414 DISTANCE = 5.18 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 371
DBREF 1ANF A 1 370 UNP P02928 MALE_ECOLI 27 396
SEQRES 1 A 370 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 370 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 370 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 370 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 370 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 370 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 370 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 370 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 370 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 370 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 370 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 370 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 370 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 370 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 370 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 370 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 370 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 370 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 370 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 370 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 370 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 370 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 370 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 370 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 370 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 370 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 370 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 370 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 370 GLN THR ARG ILE THR LYS
HET GLC A 372 11 HET GLC A 371 12
HETNAM GLC ALPHA-D-GLUCOSE
FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 HOH *104(H2 O)
HELIX 1 1 TYR A 17 GLU A 28 1 12 HELIX 2 2 LEU A 43 ALA A 52 1 10 HELIX 3 3 HIS A 64 GLN A 72 5 9 HELIX 4 4 LYS A 83 LYS A 88 1 6 HELIX 5 5 PRO A 91 VAL A 97 1 7 HELIX 6 6 GLU A 130 LYS A 142 5 13 HELIX 7 7 PRO A 154 ALA A 163 1 10 HELIX 8 8 ALA A 186 LYS A 200 1 15 HELIX 9 9 TYR A 210 ASN A 218 1 9 HELIX 10 10 PRO A 229 SER A 238 5 10 HELIX 11 11 LYS A 273 ASN A 282 1 10 HELIX 12 12 ASP A 287 ASP A 296 1 10 HELIX 13 13 LYS A 305 LEU A 311 1 7 HELIX 14 14 PRO A 315 LYS A 326 1 12 HELIX 15 15 PRO A 334 ALA A 351 5 18 HELIX 16 16 VAL A 357 ILE A 368 1 12
SHEET 1 A 2 LEU A 7 TRP A 10 0 SHEET 2 A 2 VAL A 35 GLU A 38 1 N THR A 36 O LEU A 7 SHEET 1 B 3 ILE A 59 ALA A 63 0 SHEET 2 B 3 GLY A 260 ILE A 266 -1 N GLY A 265 O ILE A 60 SHEET 3 B 3 TYR A 106 GLU A 111 -1 N GLU A 111 O GLY A 260 SHEET 1 C 3 MET A 224 ASN A 227 0 SHEET 2 C 3 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 3 C 3 TYR A 242 THR A 245 -1 N THR A 245 O LEU A 115 SHEET 1 D 2 LYS A 170 GLU A 172 0 SHEET 2 D 2 LYS A 175 ASP A 177 -1 N ASP A 177 O LYS A 170
LINK C1 GLC A 372 O4 GLC A 371 1555 1555 1.42
SITE 1 AC1 10 TRP A 62 ALA A 63 ASP A 65 ARG A 66 SITE 2 AC1 10 GLU A 153 PRO A 154 TYR A 155 TRP A 340 SITE 3 AC1 10 GLC A 371 HOH A 386 SITE 1 AC2 11 ASP A 14 LYS A 15 ALA A 63 GLU A 111 SITE 2 AC2 11 GLU A 153 GLC A 372 HOH A 380 HOH A 381 SITE 3 AC2 11 HOH A 382 HOH A 383 HOH A 384
CRYST1 105.880 68.440 57.940 90.00 112.54 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009445 0.000000 0.003920 0.00000
SCALE2 0.000000 0.014611 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018687 0.00000