10 20 30 40 50 60 70 80 1AFX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 15-MAR-97 1AFX
TITLE UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 SYNONYM: UGA; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CONSERVED UGAA TETRALOOP FROM EUKARYOTIC COMPND 8 16S-LIKE RIBOSOMAL RNA (5'-R(GGUGUGAACACC)-3')
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS RIBONUCLEIC ACID, TETRALOOP, RIBOSOMAL RNA
EXPDTA SOLUTION NMR
NUMMDL 13
AUTHOR S.E.BUTCHER,T.DIECKMANN,J.FEIGON
REVDAT 3 24-FEB-09 1AFX 1 VERSN REVDAT 2 01-APR-03 1AFX 1 JRNL REVDAT 1 15-MAY-97 1AFX 0
JRNL AUTH S.E.BUTCHER,F.H.ALLAIN,J.FEIGON JRNL TITL SOLUTION STRUCTURE OF THE LOOP B DOMAIN FROM THE JRNL TITL 2 HAIRPIN RIBOZYME. JRNL REF NAT.STRUCT.BIOL. V. 6 212 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10074938 JRNL DOI 10.1038/6651
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE.
REMARK 4 REMARK 4 1AFX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : CLUSTER OF 13 STRUCTURES WITH REMARK 210 COMMON FOLD REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 11 G A 6 C8 G A 6 N9 -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 G A 2 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 G A 2 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 6.9 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 G A 4 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 G A 4 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 G A 6 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 G A 6 N7 - C8 - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 1 G A 6 C8 - N9 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 A A 7 C5 - N7 - C8 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 A A 7 N7 - C8 - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 A A 7 C8 - N9 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 A A 8 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 A A 8 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 A A 8 N7 - C8 - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 A A 8 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 A A 10 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 A A 10 N7 - C8 - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 1 A A 10 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 G A 1 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 G A 2 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 2 G A 2 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 2 G A 4 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 2 G A 4 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 G A 6 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 G A 6 N7 - C8 - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 2 G A 6 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 2 A A 7 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 2 A A 7 N7 - C8 - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 2 A A 7 C8 - N9 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 A A 8 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 A A 8 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 A A 8 N7 - C8 - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 2 A A 8 C8 - N9 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 A A 10 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 A A 10 N7 - C8 - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 2 A A 10 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 G A 1 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 318 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 C A 9 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1AFX A 1 12 PDB 1AFX 1AFX 1 12
SEQRES 1 A 12 G G U G U G A A C A C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000