10 20 30 40 50 60 70 80 1AFH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID-BINDING PROTEIN 07-MAR-97 1AFH
TITLE LIPID TRANSFER PROTEIN FROM MAIZE SEEDLINGS, NMR, 15 TITLE 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_TAXID: 4577; SOURCE 4 ORGAN: SEEDS
KEYWDS LIPID-BINDING PROTEIN, LIPID TRANSFER PROTEIN, MAIZE, KEYWDS 2 MOLECULAR MODELING, NMR
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR J.GOMAR,M.C.PETIT,P.SODANO,D.SY,D.MARION,J.C.KADER, AUTHOR 2 F.VOVELLE,M.PTAK
REVDAT 2 24-FEB-09 1AFH 1 VERSN REVDAT 1 15-MAY-97 1AFH 0
JRNL AUTH J.GOMAR,M.C.PETIT,P.SODANO,D.SY,D.MARION,J.C.KADER, JRNL AUTH 2 F.VOVELLE,M.PTAK JRNL TITL SOLUTION STRUCTURE AND LIPID BINDING OF A JRNL TITL 2 NONSPECIFIC LIPID TRANSFER PROTEIN EXTRACTED FROM JRNL TITL 3 MAIZE SEEDS. JRNL REF PROTEIN SCI. V. 5 565 1996 JRNL REFN ISSN 0961-8368 JRNL PMID 8845747
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE.
REMARK 4 REMARK 4 1AFH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, DQF-COSY, ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX-500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, DIANA, XPLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION AND REMARK 210 ANALYSIS OF THE RAMACHANDRAN REMARK 210 MAPS AND ENERGETIC CRITERIA REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 89 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 7 CYS A 14 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 7 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 8 TYR A 17 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 CYS A 89 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 11 CYS A 14 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 13 CYS A 89 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 14 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 15 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 70.05 32.13 REMARK 500 1 SER A 3 80.19 -156.39 REMARK 500 1 CYS A 4 -57.88 66.08 REMARK 500 1 GLN A 21 48.49 -140.79 REMARK 500 1 SER A 23 -47.60 70.87 REMARK 500 1 ARG A 41 23.74 -152.30 REMARK 500 1 THR A 43 -61.78 67.73 REMARK 500 1 SER A 73 -70.62 -44.63 REMARK 500 1 SER A 86 48.54 -84.96 REMARK 500 1 CYS A 89 56.04 -117.08 REMARK 500 1 SER A 90 -38.70 -139.67 REMARK 500 2 GLN A 21 59.76 -141.22 REMARK 500 2 SER A 23 -51.34 74.42 REMARK 500 2 THR A 43 -56.98 160.15 REMARK 500 2 SER A 61 97.93 -62.41 REMARK 500 2 THR A 85 101.14 -58.37 REMARK 500 2 SER A 86 60.53 60.36 REMARK 500 2 ASP A 88 -72.46 -150.87 REMARK 500 2 SER A 90 -42.35 -162.75 REMARK 500 3 SER A 16 -61.93 -91.21 REMARK 500 3 SER A 23 -45.71 -175.24 REMARK 500 3 ALA A 40 -131.21 -91.51 REMARK 500 3 THR A 43 -60.73 78.17 REMARK 500 3 SER A 61 77.90 160.45 REMARK 500 3 LEU A 63 138.13 68.99 REMARK 500 3 THR A 85 -115.69 39.72 REMARK 500 3 SER A 86 -60.87 62.75 REMARK 500 4 ILE A 2 71.24 35.12 REMARK 500 4 SER A 3 59.74 -144.59 REMARK 500 4 CYS A 4 -52.50 67.30 REMARK 500 4 SER A 23 60.45 170.17 REMARK 500 4 CYS A 29 -73.24 -66.63 REMARK 500 4 ARG A 41 51.32 -172.62 REMARK 500 4 THR A 43 -53.80 54.66 REMARK 500 4 SER A 61 94.21 -65.57 REMARK 500 4 LEU A 63 134.43 69.12 REMARK 500 4 SER A 84 -175.65 -170.89 REMARK 500 4 SER A 86 45.76 -83.93 REMARK 500 4 CYS A 89 53.57 -143.47 REMARK 500 4 SER A 90 -48.48 -159.15 REMARK 500 5 ILE A 2 82.56 -69.12 REMARK 500 5 SER A 23 36.05 -165.62 REMARK 500 5 ARG A 41 26.48 -157.84 REMARK 500 5 THR A 43 -66.08 70.09 REMARK 500 5 VAL A 60 69.85 -64.52 REMARK 500 5 SER A 61 -102.68 54.38 REMARK 500 5 LEU A 63 99.98 63.54 REMARK 500 5 PRO A 80 56.60 -65.31 REMARK 500 5 ILE A 83 67.12 -104.44 REMARK 500 5 THR A 85 -16.44 81.04 REMARK 500 5 SER A 90 -42.64 -143.96 REMARK 500 6 SER A 23 49.98 -176.38 REMARK 500 6 ARG A 41 -20.19 -163.32 REMARK 500 6 THR A 43 -64.60 62.40 REMARK 500 6 SER A 61 113.26 77.25 REMARK 500 6 ILE A 71 -70.38 -60.43 REMARK 500 6 THR A 85 -56.82 68.78 REMARK 500 6 THR A 87 140.92 -38.48 REMARK 500 6 SER A 90 -41.15 -151.34 REMARK 500 7 PRO A 25 -78.82 -59.95 REMARK 500 7 SER A 26 149.79 161.83 REMARK 500 7 ARG A 41 38.19 -152.55 REMARK 500 7 THR A 43 -60.92 65.19 REMARK 500 7 SER A 86 53.53 -93.32 REMARK 500 7 ASP A 88 -71.74 -83.13 REMARK 500 7 SER A 90 -49.24 -170.12 REMARK 500 8 SER A 23 -51.82 76.16 REMARK 500 8 ARG A 41 20.49 -143.10 REMARK 500 8 THR A 43 -61.54 69.63 REMARK 500 8 SER A 61 -62.74 162.79 REMARK 500 8 SER A 73 -70.91 -48.51 REMARK 500 8 SER A 84 -85.30 -150.61 REMARK 500 8 THR A 85 -61.11 -152.62 REMARK 500 8 SER A 86 59.83 -109.50 REMARK 500 8 SER A 90 -50.66 -144.98 REMARK 500 9 GLN A 21 72.12 -117.59 REMARK 500 9 SER A 23 -60.80 -151.23 REMARK 500 9 ARG A 41 20.27 -161.06 REMARK 500 9 THR A 43 -59.82 67.95 REMARK 500 9 VAL A 60 62.93 -64.90 REMARK 500 9 SER A 61 57.32 36.02 REMARK 500 9 SER A 90 -51.42 -159.30 REMARK 500 10 GLN A 21 78.18 -118.16 REMARK 500 10 SER A 23 -58.71 -168.88 REMARK 500 10 ALA A 40 -110.79 -139.92 REMARK 500 10 THR A 43 -67.76 84.80 REMARK 500 10 SER A 61 90.85 -64.29 REMARK 500 10 SER A 84 -106.68 -158.68 REMARK 500 10 CYS A 89 57.89 -90.90 REMARK 500 10 SER A 90 -42.34 -155.42 REMARK 500 11 ILE A 2 65.42 30.54 REMARK 500 11 SER A 3 -74.88 -123.16 REMARK 500 11 CYS A 4 -46.31 -151.51 REMARK 500 11 GLN A 21 50.01 -140.41 REMARK 500 11 SER A 23 -58.02 71.80 REMARK 500 11 ALA A 40 51.50 -166.91 REMARK 500 11 THR A 43 -51.48 160.52 REMARK 500 11 VAL A 60 53.53 -65.92 REMARK 500 11 SER A 61 -138.11 49.12 REMARK 500 11 ILE A 71 -74.23 -47.83 REMARK 500 11 ILE A 83 40.19 -93.24 REMARK 500 11 SER A 90 -51.50 -135.62 REMARK 500 12 ILE A 2 43.99 37.98 REMARK 500 12 CYS A 4 -56.29 62.80 REMARK 500 12 SER A 23 -62.65 73.91 REMARK 500 12 ARG A 41 18.48 -147.94 REMARK 500 12 THR A 43 -61.77 70.95 REMARK 500 12 SER A 61 83.45 74.80 REMARK 500 12 SER A 84 -72.19 -123.47 REMARK 500 12 THR A 85 -69.32 -133.13 REMARK 500 12 THR A 87 -100.18 54.63 REMARK 500 12 ASP A 88 -70.74 -157.97 REMARK 500 12 SER A 90 -38.15 -161.37 REMARK 500 13 SER A 3 82.35 -152.06 REMARK 500 13 CYS A 4 -59.85 66.43 REMARK 500 13 SER A 23 -43.74 179.15 REMARK 500 13 ALA A 40 -148.27 -84.41 REMARK 500 13 THR A 43 -66.94 76.70 REMARK 500 13 LEU A 63 100.65 19.86 REMARK 500 13 SER A 78 62.65 -106.82 REMARK 500 13 THR A 82 -135.55 -113.71 REMARK 500 13 THR A 85 -59.89 72.07 REMARK 500 13 THR A 87 -144.63 31.58 REMARK 500 13 SER A 90 -51.52 -164.08 REMARK 500 14 ILE A 2 46.41 33.90 REMARK 500 14 ALA A 40 85.78 -168.62 REMARK 500 14 ARG A 41 24.31 -158.86 REMARK 500 14 THR A 43 -65.72 68.80 REMARK 500 14 SER A 61 -71.03 76.59 REMARK 500 14 SER A 78 59.80 -112.11 REMARK 500 14 THR A 82 -94.97 -128.59 REMARK 500 14 ILE A 83 -51.79 -120.12 REMARK 500 14 THR A 85 -130.01 -72.44 REMARK 500 14 SER A 86 -58.90 63.03 REMARK 500 14 CYS A 89 54.55 -105.17 REMARK 500 14 SER A 90 -40.89 -144.06 REMARK 500 15 ILE A 2 59.04 32.11 REMARK 500 15 GLN A 21 70.70 -103.82 REMARK 500 15 SER A 23 -54.29 176.63 REMARK 500 15 ALA A 39 32.01 -94.85 REMARK 500 15 ALA A 40 -159.51 -164.39 REMARK 500 15 THR A 43 -67.44 83.83 REMARK 500 15 SER A 61 107.54 76.49 REMARK 500 15 LEU A 63 103.09 59.48 REMARK 500 15 SER A 84 -104.91 -119.45 REMARK 500 15 THR A 85 -55.90 -164.02 REMARK 500 15 CYS A 89 56.11 -109.64 REMARK 500 15 SER A 90 -61.40 -128.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 46 0.12 SIDE_CHAIN REMARK 500 1 ARG A 91 0.11 SIDE_CHAIN REMARK 500 2 ARG A 19 0.08 SIDE_CHAIN REMARK 500 2 ARG A 47 0.07 SIDE_CHAIN REMARK 500 4 ARG A 19 0.09 SIDE_CHAIN REMARK 500 4 ARG A 41 0.11 SIDE_CHAIN REMARK 500 4 ARG A 47 0.14 SIDE_CHAIN REMARK 500 4 ARG A 91 0.15 SIDE_CHAIN REMARK 500 5 ARG A 41 0.14 SIDE_CHAIN REMARK 500 5 ARG A 91 0.16 SIDE_CHAIN REMARK 500 6 ARG A 34 0.11 SIDE_CHAIN REMARK 500 6 ARG A 41 0.08 SIDE_CHAIN REMARK 500 6 ARG A 46 0.21 SIDE_CHAIN REMARK 500 6 ARG A 91 0.09 SIDE_CHAIN REMARK 500 7 ARG A 19 0.16 SIDE_CHAIN REMARK 500 7 ARG A 34 0.12 SIDE_CHAIN REMARK 500 7 ARG A 41 0.16 SIDE_CHAIN REMARK 500 7 ARG A 46 0.13 SIDE_CHAIN REMARK 500 7 ARG A 47 0.08 SIDE_CHAIN REMARK 500 8 ARG A 19 0.08 SIDE_CHAIN REMARK 500 8 ARG A 46 0.11 SIDE_CHAIN REMARK 500 8 ARG A 47 0.12 SIDE_CHAIN REMARK 500 9 ARG A 19 0.08 SIDE_CHAIN REMARK 500 9 ARG A 34 0.09 SIDE_CHAIN REMARK 500 9 ARG A 41 0.16 SIDE_CHAIN REMARK 500 10 ARG A 41 0.15 SIDE_CHAIN REMARK 500 10 ARG A 46 0.10 SIDE_CHAIN REMARK 500 10 ARG A 47 0.17 SIDE_CHAIN REMARK 500 11 ARG A 91 0.11 SIDE_CHAIN REMARK 500 12 ARG A 91 0.16 SIDE_CHAIN REMARK 500 13 ARG A 34 0.10 SIDE_CHAIN REMARK 500 13 ARG A 91 0.14 SIDE_CHAIN REMARK 500 14 ARG A 34 0.12 SIDE_CHAIN REMARK 500 14 ARG A 46 0.12 SIDE_CHAIN REMARK 500 14 TYR A 81 0.07 SIDE_CHAIN REMARK 500 14 ARG A 91 0.08 SIDE_CHAIN REMARK 500 15 ARG A 91 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1AFH A 1 93 UNP P19656 NLTP_MAIZE 28 120
SEQRES 1 A 93 ALA ILE SER CYS GLY GLN VAL ALA SER ALA ILE ALA PRO SEQRES 2 A 93 CYS ILE SER TYR ALA ARG GLY GLN GLY SER GLY PRO SER SEQRES 3 A 93 ALA GLY CYS CYS SER GLY VAL ARG SER LEU ASN ASN ALA SEQRES 4 A 93 ALA ARG THR THR ALA ASP ARG ARG ALA ALA CYS ASN CYS SEQRES 5 A 93 LEU LYS ASN ALA ALA ALA GLY VAL SER GLY LEU ASN ALA SEQRES 6 A 93 GLY ASN ALA ALA SER ILE PRO SER LYS CYS GLY VAL SER SEQRES 7 A 93 ILE PRO TYR THR ILE SER THR SER THR ASP CYS SER ARG SEQRES 8 A 93 VAL ASN
HELIX 1 1 GLY A 5 ARG A 19 1 15 HELIX 2 2 SER A 26 ALA A 39 1 14 HELIX 3 3 THR A 43 ALA A 58 1 16 HELIX 4 4 ALA A 65 CYS A 75 1 11
SSBOND 1 CYS A 4 CYS A 52 1555 1555 2.02 SSBOND 2 CYS A 14 CYS A 29 1555 1555 2.02 SSBOND 3 CYS A 30 CYS A 75 1555 1555 2.03 SSBOND 4 CYS A 50 CYS A 89 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000