1AC9 - Header Asymmetric Unit

HEADER DNA 17-FEB-97 1AC9

TITLE SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE TITLE 2 ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, TITLE 3 RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION TITLE 4 REFINEMENT, 6 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: (CTG-LGP-ATCCAG); COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS DNA DECAMER, DEOXYRIBONUCLEIC ACID

EXPDTA SOLUTION NMR

NUMMDL 6

AUTHOR M.FOTI,S.MARSHALKO,E.SCHURTER,S.KUMAR,G.P.BEARDSLEY, AUTHOR 2 B.I.SCHWEITZER

REVDAT 2 24-FEB-09 1AC9 1 VERSN REVDAT 1 07-JUL-97 1AC9 0

JRNL AUTH M.FOTI,S.MARSHALKO,E.SCHURTER,S.KUMAR, JRNL AUTH 2 G.P.BEARDSLEY,B.I.SCHWEITZER JRNL TITL SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE JRNL TITL 2 ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, JRNL TITL 3 RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION JRNL TITL 4 MATRIX REFINEMENT. JRNL REF BIOCHEMISTRY V. 36 5336 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9154915 JRNL DOI 10.1021/BI962604E

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIX TOTAL STRUCTURES DETERMINED (3 REMARK 3 FROM CANONICAL A-TYPE DNA AND 3 FROM CANONICAL B-TYPE DNA). REMARK 3 ALL STRUCTURES WERE GENERATED WITH DIFFERENT STARTING RANDOM REMARK 3 NUMBER SEEDS. STRUCTURES GENERATED FROM A-TYPE: MODELS 1 - 3 REMARK 3 STRUCTURES GENERATED FROM B-TYPE: MOD ELS 4 - 6

REMARK 4 REMARK 4 1AC9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY, HETEROTOCSY, REMARK 210 COSY, DQFCOSY, HSQC, HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY PLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX95.0, X-PLOR REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 6 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 6 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DT A 2 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DG A 3 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DG A 3 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG A 3 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 DA A 5 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DA A 5 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DA A 9 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DG A 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG A 10 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DC B 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DG B 13 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DG B 13 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG B 13 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 DA B 15 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DA B 15 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DA B 19 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DA B 19 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DG B 20 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG B 20 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 2 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DT A 2 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 DG A 3 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DG A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DA A 5 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DA A 5 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 2 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DA A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DG A 10 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DG A 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DC B 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 DG B 13 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DG B 13 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 DA B 15 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DA B 15 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 2 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DA B 19 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DA B 19 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG B 20 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 DT A 2 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 153 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

DBREF 1AC9 A 1 10 PDB 1AC9 1AC9 1 10 DBREF 1AC9 B 11 20 PDB 1AC9 1AC9 11 20

SEQRES 1 A 10 DC DT DG LGP DA DT DC DC DA DG SEQRES 1 B 10 DC DT DG LGP DA DT DC DC DA DG

MODRES 1AC9 LGP A 4 DG MODRES 1AC9 LGP B 14 DG

HET LGP A 4 32 HET LGP B 14 32

HETNAM LGP N9-1-HYDROXY-PROP-2-OXYMETHYL-GUANINE-3'-MONOPHOSPHATE

HETSYN LGP LINEAR DECARBON-C2* GUANOSINE-5'-MONOPHOSPHATE

FORMUL 1 LGP 2(C9 H14 N5 O7 P)

LINK P LGP A 4 O3' DG A 3 1555 1555 1.62 LINK O3' LGP A 4 P DA A 5 1555 1555 1.61 LINK P LGP B 14 O3' DG B 13 1555 1555 1.62 LINK O3' LGP B 14 P DA B 15 1555 1555 1.61

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000