10 20 30 40 50 60 70 80 1AC0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 10-FEB-97 1AC0
TITLE GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH TITLE 2 CYCLODEXTRIN, NMR, MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOAMYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BINDING DOMAIN, RESIDUES 509 - 616; COMPND 5 SYNONYM: 1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE; COMPND 6 EC: 3.2.1.3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 STRAIN: AB4.1; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS NIGER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5061; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PIGF; SOURCE 8 EXPRESSION_SYSTEM_GENE: A. NIGER GLAA
KEYWDS HYDROLASE, STARCH BINDING DOMAIN
EXPDTA SOLUTION NMR
AUTHOR K.SORIMACHI,M.-F.LE GAL-COEFFET,G.WILLIAMSON,D.B.ARCHER, AUTHOR 2 M.P.WILLIAMSON
REVDAT 3 19-MAY-09 1AC0 1 REMARK REVDAT 2 24-FEB-09 1AC0 1 VERSN REVDAT 1 07-JUL-97 1AC0 0
JRNL AUTH K.SORIMACHI,M.F.LE GAL-COEFFET,G.WILLIAMSON, JRNL AUTH 2 D.B.ARCHER,M.P.WILLIAMSON JRNL TITL SOLUTION STRUCTURE OF THE GRANULAR STARCH BINDING JRNL TITL 2 DOMAIN OF ASPERGILLUS NIGER GLUCOAMYLASE BOUND TO JRNL TITL 3 BETA-CYCLODEXTRIN. JRNL REF STRUCTURE V. 5 647 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9195884 JRNL DOI 10.1016/S0969-2126(97)00220-7
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SORIMACHI,A.J.JACKS,M.F.LE GAL-COEFFET, REMARK 1 AUTH 2 G.WILLIAMSON,D.B.ARCHER,M.P.WILLIAMSON REMARK 1 TITL SOLUTION STRUCTURE OF THE GRANULAR STARCH BINDING REMARK 1 TITL 2 DOMAIN OF GLUCOAMYLASE FROM ASPERGILLUS NIGER BY REMARK 1 TITL 3 NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY REMARK 1 REF J.MOL.BIOL. V. 259 970 1996 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE VALUES SHOWN IN THE TEMPERATURE REMARK 3 FACTOR FIELD ARE ATOMIC RMSD VALUES OF 41 STRUCTURES TO THE REMARK 3 UNMINIMIZED AVERAGE STRUCTURE.
REMARK 4 REMARK 4 1AC0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED TOCSY; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX 500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : RANDOM FROM 81 GOOD STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 535 O LEU A 540 1.33 REMARK 500 O4 GLC A 4 O6 BGC A 5 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 556 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 564 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 510 -62.74 -141.90 REMARK 500 THR A 511 -55.14 176.06 REMARK 500 ALA A 523 -133.03 -141.04 REMARK 500 THR A 524 102.88 177.76 REMARK 500 THR A 526 65.48 -108.76 REMARK 500 ASP A 542 -19.16 65.75 REMARK 500 GLU A 544 82.86 -170.01 REMARK 500 THR A 545 -13.26 -46.65 REMARK 500 SER A 558 -120.07 -75.92 REMARK 500 ASP A 560 54.60 176.20 REMARK 500 TRP A 563 93.58 19.21 REMARK 500 VAL A 565 154.80 174.15 REMARK 500 THR A 566 86.82 -157.56 REMARK 500 VAL A 567 -166.73 -116.46 REMARK 500 ALA A 571 -66.86 -162.46 REMARK 500 GLU A 573 -143.41 -162.23 REMARK 500 ASP A 585 -76.65 -98.77 REMARK 500 ASP A 586 -90.14 -65.47 REMARK 500 SER A 587 -129.60 -170.18 REMARK 500 GLU A 589 74.12 -154.06 REMARK 500 TRP A 590 86.26 -51.07 REMARK 500 GLU A 591 87.86 -62.94 REMARK 500 ASP A 593 -66.72 -90.06 REMARK 500 GLU A 597 88.33 -160.03 REMARK 500 ALA A 603 -172.21 -59.63 REMARK 500 THR A 606 63.80 -158.35 REMARK 500 ALA A 609 -147.50 -135.45 REMARK 500 VAL A 611 78.72 -160.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 581 0.26 SIDE_CHAIN REMARK 500 ARG A 596 0.31 SIDE_CHAIN REMARK 500 ARG A 616 0.14 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLO A 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC A 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 4 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC A 5 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLO A 6 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 7 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 617B REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 618B REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 619B REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 620B REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 621B REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 622B REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 623B
DBREF 1AC0 A 509 616 UNP P04064 AMYG_ASPNG 533 640
SEQRES 1 A 108 CYS THR THR PRO THR ALA VAL ALA VAL THR PHE ASP LEU SEQRES 2 A 108 THR ALA THR THR THR TYR GLY GLU ASN ILE TYR LEU VAL SEQRES 3 A 108 GLY SER ILE SER GLN LEU GLY ASP TRP GLU THR SER ASP SEQRES 4 A 108 GLY ILE ALA LEU SER ALA ASP LYS TYR THR SER SER ASP SEQRES 5 A 108 PRO LEU TRP TYR VAL THR VAL THR LEU PRO ALA GLY GLU SEQRES 6 A 108 SER PHE GLU TYR LYS PHE ILE ARG ILE GLU SER ASP ASP SEQRES 7 A 108 SER VAL GLU TRP GLU SER ASP PRO ASN ARG GLU TYR THR SEQRES 8 A 108 VAL PRO GLN ALA CYS GLY THR SER THR ALA THR VAL THR SEQRES 9 A 108 ASP THR TRP ARG
HET GLC A 1 21 HET BGC A 2 21 HET GLC A 3 21 HET GLC A 4 21 HET BGC A 5 21 HET GLO A 6 21 HET GLC A 7 21 HET GLC A 617B 21 HET GLC A 618B 21 HET GLC A 619B 21 HET GLC A 620B 21 HET GLC A 621B 21 HET GLC A 622B 21 HET GLC A 623B 21
HETNAM GLC ALPHA-D-GLUCOSE HETNAM BGC BETA-D-GLUCOSE HETNAM GLO D-GLUCOSE IN LINEAR FORM
FORMUL 2 GLC 11(C6 H12 O6) FORMUL 2 BGC 2(C6 H12 O6) FORMUL 2 GLO C6 H12 O6
HELIX 1 1 THR A 545 ASP A 547 5 3
SHEET 1 A 7 SER A 607 TRP A 615 0 SHEET 2 A 7 THR A 513 ALA A 523 1 N THR A 518 O ALA A 609 SHEET 3 A 7 PRO A 561 ALA A 571 -1 N VAL A 567 O VAL A 517 SHEET 4 A 7 ILE A 549 SER A 552 -1 N SER A 552 O TYR A 564 SHEET 5 A 7 ASN A 530 SER A 536 -1 N LEU A 533 O ILE A 549 SHEET 6 A 7 GLU A 573 ILE A 582 -1 N LYS A 578 O VAL A 534 SHEET 7 A 7 GLU A 589 GLU A 591 -1 N GLU A 589 O ARG A 581
SSBOND 1 CYS A 509 CYS A 604 1555 1555 2.02
LINK C1 GLC A 1 O4 GLC A 7 1555 1555 1.40 LINK O4 GLC A 1 C1 BGC A 2 1555 1555 1.40 LINK O4 BGC A 2 C1 GLC A 3 1555 1555 1.40 LINK O4 GLC A 3 C1 GLC A 4 1555 1555 1.40 LINK O4 GLC A 4 C1 BGC A 5 1555 1555 1.40 LINK O4 BGC A 5 C1 GLO A 6 1555 1555 1.41 LINK O4 GLO A 6 C1 GLC A 7 1555 1555 1.40 LINK C1 GLC A 617B O4 GLC A 623B 1555 1555 1.40 LINK O4 GLC A 617B C1 GLC A 618B 1555 1555 1.41 LINK O4 GLC A 618B C1 GLC A 619B 1555 1555 1.40 LINK O4 GLC A 619B C1 GLC A 620B 1555 1555 1.40 LINK O4 GLC A 620B C1 GLC A 621B 1555 1555 1.40 LINK O4 GLC A 621B C1 GLC A 622B 1555 1555 1.40 LINK O4 GLC A 622B C1 GLC A 623B 1555 1555 1.40
SITE 1 AC1 3 BGC A 2 GLC A 7 TRP A 590 SITE 1 AC2 6 GLC A 1 GLC A 3 TRP A 543 GLU A 544 SITE 2 AC2 6 THR A 545 TRP A 590 SITE 1 AC3 4 BGC A 2 GLC A 4 TRP A 543 GLU A 544 SITE 1 AC4 2 GLC A 3 BGC A 5 SITE 1 AC5 4 GLC A 4 GLO A 6 SER A 536 TRP A 543 SITE 1 AC6 3 BGC A 5 GLC A 7 TRP A 543 SITE 1 AC7 2 GLC A 1 GLO A 6 SITE 1 AC8 7 TYR A 556 THR A 557 SER A 558 PRO A 561 SITE 2 AC8 7 LEU A 562 GLC A 618B GLC A 623B SITE 1 AC9 4 GLC A 617B GLC A 619B GLC A 620B GLC A 623B SITE 1 BC1 4 GLC A 618B GLC A 620B GLC A 621B GLC A 622B SITE 1 BC2 5 TYR A 527 SER A 558 GLC A 618B GLC A 619B SITE 2 BC2 5 GLC A 621B SITE 1 BC3 3 GLC A 619B GLC A 620B GLC A 622B SITE 1 BC4 3 GLC A 619B GLC A 621B GLC A 623B SITE 1 BC5 7 ALA A 523 TYR A 556 PRO A 561 LEU A 562 SITE 2 BC5 7 GLC A 617B GLC A 618B GLC A 622B
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000