10 20 30 40 50 60 70 80 198D - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 28-NOV-94 198D
TITLE A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: TITLE 2 CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG
EXPDTA X-RAY DIFFRACTION
AUTHOR A.DAUTANT,B.LANGLOIS D'ESTAINTOT,B.GALLOIS,T.BROWN, AUTHOR 2 W.N.HUNTER
REVDAT 3 24-FEB-09 198D 1 VERSN REVDAT 2 01-APR-03 198D 1 JRNL REVDAT 1 15-MAR-95 198D 0
JRNL AUTH A.DAUTANT,B.LANGLOIS D'ESTAINTOT,B.GALLOIS,T.BROWN, JRNL AUTH 2 W.N.HUNTER JRNL TITL A TRIGONAL FORM OF THE IDARUBICIN:D(CGATCG) JRNL TITL 2 COMPLEX; CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 A JRNL TITL 3 RESOLUTION. JRNL REF NUCLEIC ACIDS RES. V. 23 1710 1995 JRNL REFN ISSN 0305-1048 JRNL PMID 7784175 JRNL DOI 10.1093/NAR/23.10.1710
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.-G.GAO,A.H.-J.WANG REMARK 1 TITL INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING REMARK 1 TITL 2 OF ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR REMARK 1 TITL 3 STRUCTURE OF IDARUBICIN AND REMARK 1 TITL 4 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO REMARK 1 TITL 5 D(CGATCG) REMARK 1 REF ANTI-CANCER DRUG DES. V. 6 137 1991 REMARK 1 REFN ISSN 0266-9536
REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 3768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 480 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : 0.025 ; 0.025 REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : 0.040 ; 0.040 REMARK 3 PHOSPHATE BONDS DISTANCE (A) : 0.068 ; 0.035 REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : 0.037 ; 0.045 REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 198D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.00K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.02167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.04333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 C6 DG A 2 N1 -0.050 REMARK 500 DT A 4 C5 DT A 4 C6 0.044 REMARK 500 DC A 5 C5' DC A 5 C4' 0.046 REMARK 500 DG A 6 C5' DG A 6 C4' 0.076 REMARK 500 DG A 6 N1 DG A 6 C2 -0.055 REMARK 500 DG B 8 C2 DG B 8 N3 -0.051 REMARK 500 DT B 10 O4' DT B 10 C1' 0.068 REMARK 500 DT C 16 C2 DT C 16 O2 0.055 REMARK 500 DT C 16 C4 DT C 16 O4 0.060 REMARK 500 DC C 17 O4' DC C 17 C4' -0.061 REMARK 500 DG C 18 C5 DG C 18 N7 0.039 REMARK 500 DA D 21 N3 DA D 21 C4 0.038 REMARK 500 DT D 22 C5' DT D 22 C4' 0.047 REMARK 500 DC D 23 O4' DC D 23 C1' 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DA A 3 C6 - N1 - C2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA A 3 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA A 3 C3' - O3' - P ANGL. DEV. = 9.7 DEGREES REMARK 500 DC A 5 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 9.0 DEGREES REMARK 500 DT A 4 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 8 C4 - C5 - N7 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 8 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG B 8 N9 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 8 N3 - C2 - N2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 8 N1 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG B 8 C5 - C6 - O6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DC B 11 N3 - C4 - C5 ANGL. DEV. = -2.8 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 10.3 DEGREES REMARK 500 DC C 13 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DG C 14 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 9.5 DEGREES REMARK 500 DG C 14 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG C 14 N1 - C2 - N3 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG C 14 C4 - C5 - N7 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG C 14 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG C 14 N9 - C4 - C5 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA C 15 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 15 C6 - N1 - C2 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA C 15 N1 - C2 - N3 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA C 15 C5 - C6 - N1 ANGL. DEV. = -3.5 DEGREES REMARK 500 DA C 15 N1 - C6 - N6 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT C 16 C1' - O4' - C4' ANGL. DEV. = 4.9 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT C 16 N1 - C2 - N3 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 16 C2 - N3 - C4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT C 16 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT C 16 C4 - C5 - C7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 16 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA C 15 C3' - O3' - P ANGL. DEV. = 10.8 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 16.9 DEGREES REMARK 500 DC C 17 C2 - N3 - C4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC C 17 N3 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC C 17 N1 - C2 - O2 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT C 16 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DG C 18 C1' - O4' - C4' ANGL. DEV. = 4.7 DEGREES REMARK 500 DG C 18 N3 - C4 - C5 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG C 18 N9 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 19 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC C 17 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 62 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH D 63 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH C 110 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH C 112 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH C 118 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 102 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH A 100 DISTANCE = 13.54 ANGSTROMS REMARK 525 HOH B 107 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH B 108 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH B 116 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH D 93 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH D 105 DISTANCE = 10.11 ANGSTROMS REMARK 525 HOH A 109 DISTANCE = 9.39 ANGSTROMS REMARK 525 HOH A 114 DISTANCE = 11.34 ANGSTROMS REMARK 525 HOH A 122 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH C 168 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH C 169 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH D 149 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 161 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH C 181 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH B 170 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 178 DISTANCE = 13.60 ANGSTROMS REMARK 525 HOH D 162 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A 146 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH C 188 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH C 189 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH D 176 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH D 179 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A 159 DISTANCE = 14.52 ANGSTROMS REMARK 525 HOH A 160 DISTANCE = 14.55 ANGSTROMS REMARK 525 HOH A 165 DISTANCE = 12.73 ANGSTROMS REMARK 525 HOH A 177 DISTANCE = 10.47 ANGSTROMS REMARK 525 HOH A 187 DISTANCE = 10.45 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM5 A 25 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM5 B 26 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM5 D 27 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM5 D 28 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 29
DBREF 198D A 1 6 PDB 198D 198D 1 6 DBREF 198D B 7 12 PDB 198D 198D 7 12 DBREF 198D C 13 18 PDB 198D 198D 13 18 DBREF 198D D 19 24 PDB 198D 198D 19 24
SEQRES 1 A 6 DC DG DA DT DC DG SEQRES 1 B 6 DC DG DA DT DC DG SEQRES 1 C 6 DC DG DA DT DC DG SEQRES 1 D 6 DC DG DA DT DC DG
HET DM5 A 25 36 HET DM5 B 26 36 HET DM5 D 27 36 HET DM5 D 28 36 HET SPM A 29 14
HETNAM DM5 IDARUBICIN HETNAM SPM SPERMINE
HETSYN DM5 4-DEMETHOXY-DAUNORUBICIN
FORMUL 5 DM5 4(C26 H27 N O9) FORMUL 9 SPM C10 H26 N4 FORMUL 10 HOH *160(H2 O)
SITE 1 AC1 12 DC A 1 DT A 4 DC A 5 DG A 6 SITE 2 AC1 12 HOH A 44 DC B 7 DG B 8 DA B 9 SITE 3 AC1 12 DG B 12 HOH B 98 DG C 18 HOH C 47 SITE 1 AC2 8 DC A 1 DG A 2 DA A 3 HOH A 95 SITE 2 AC2 8 DG B 8 DT B 10 DC B 11 DG B 12 SITE 1 AC3 10 DG A 6 DT C 16 DC C 17 DG C 18 SITE 2 AC3 10 DC D 19 DG D 20 DA D 21 DG D 24 SITE 3 AC3 10 HOH D 33 HOH D 81 SITE 1 AC4 7 DC C 13 DG C 14 HOH C 154 DG D 20 SITE 2 AC4 7 DC D 23 DG D 24 HOH D 33 SITE 1 AC5 9 DC A 1 DA A 3 DT A 4 DC A 5 SITE 2 AC5 9 DG A 6 HOH A 95 DC C 17 DG C 18 SITE 3 AC5 9 HOH D 81
CRYST1 52.996 52.996 33.065 90.00 90.00 120.00 P 31 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018869 0.010894 0.000000 0.00000
SCALE2 0.000000 0.021788 0.000000 0.00000
SCALE3 0.000000 0.000000 0.030243 0.00000