10 20 30 40 50 60 70 80 163D - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA/TRANSCRIPTION REGULATION PROTEIN 15-FEB-94 163D
TITLE A THREE-DIMENSIONAL MODEL OF THE REV BINDING ELEMENT OF HIV- TITLE 2 1 DERIVED FROM ANALYSES OF IN VITRO SELECTED VARIANTS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (REV RESPONSIVE ELEMENT); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HIV REV PROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 34 - 50; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2
KEYWDS RNA/TRANSCRIPTION REGULATION PROTEIN
EXPDTA THEORETICAL MODEL
AUTHOR F.LECLERC,R.J.CEDERGREN,A.D.ELLINGTON
REVDAT 2 01-APR-03 163D 1 JRNL REVDAT 1 31-MAY-94 163D 0
JRNL AUTH F.LECLERC,R.CEDERGREN,A.D.ELLINGTON JRNL TITL A THREE-DIMENSIONAL MODEL OF THE REV-BINDING JRNL TITL 2 ELEMENT OF HIV-1 DERIVED FROM ANALYSES OF APTAMERS. JRNL REF NAT.STRUCT.BIOL. V. 1 293 1994 JRNL REFN ASTM NSBIEW US ISSN 1072-8368
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.BATTISTE,R.TAN,A.D.FRANKEL,J.R.WILLIAMSON REMARK 1 TITL BINDING OF AN HIV REV PEPTIDE TO REV RESPONSIVE REMARK 1 TITL 2 ELEMENT RNA INDUCES FORMATION OF PURINE-PURINE REMARK 1 TITL 3 BASE PAIRS REMARK 1 REF BIOCHEMISTRY V. 33 2741 1994 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.GIVER,D.BARTEL,M.ZAPP,A.PAWUL,M.GREEN, REMARK 1 AUTH 2 A.D.ELLINGTON REMARK 1 TITL SELECTION AND DESIGN OF HIGH-AFFINITY RNA LIGANDS REMARK 1 TITL 2 FOR HIV-1 REV REMARK 1 REF GENE V. 137 19 1993 REMARK 1 REFN ASTM GENED6 NE ISSN 0378-1119 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.B.JENSEN,L.GREEN,S.MACDOUGAL-WAUGH,C.TUERK REMARK 1 TITL CHARACTERIZATION OF AN IN VITRO-SELECTED RNA REMARK 1 TITL 2 LIGAND TO THE HIV-1 REV PROTEIN REMARK 1 REF J.MOL.BIOL. V. 235 237 1994 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.TAN,L.CHEN,J.A.BUETTNER,D.HUDSON,A.D.FRANKEL REMARK 1 TITL RNA RECOGNITION BY AN ISOLATED "A"(ALPHA)-HELIX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 73 1031 1993 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.GIVER,D.BARTEL,M.ZAPP,A.PAWUL,M.GREEN, REMARK 1 AUTH 2 A.D.ELLINGTON REMARK 1 TITL SELECTIVE OPTIMIZATION OF THE REV-BINDING ELEMENT REMARK 1 TITL 2 OF HIV-1 REMARK 1 REF NUCLEIC ACIDS RES. V. 21 5509 1993 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.L.ZAPP,S.STERN,M.R.GREEN REMARK 1 TITL SMALL MOLECULES THAT SELECTIVELY BLOCK RNA BINDING REMARK 1 TITL 2 OF HIV-1 REV PROTEIN INHIBIT REV FUNCTION AND REMARK 1 TITL 3 VIRAL PRODUCTION REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 74 969 1993 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.P.BARTEL,M.L.ZAPP,M.R.GREEN,J.W.SZOSTAK REMARK 1 TITL HIV-1 REV REGULATION INVOLVES RECOGNITION OF REMARK 1 TITL 2 NON-WATSON-CRICK BASE-PAIRS IN VIRAL RNA REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 67 529 1991 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 163D COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 5 REMARK 5 THE RNA MOLECULE (30 NUCLEOTIDES) IS DERIVED FROM THE REV REMARK 5 RESPONSE ELEMENT (RRE) RNA (234 NUCLEOTIDES) WHICH IS A REMARK 5 STEM-LOOP STRUCTURE PRESENT WITHIN THE ENVELOPE CODING REMARK 5 REGION OF THE HIV-1 ENVELOPE GLYCOPROTEIN GENE. THE RNA REMARK 5 SEQUENCE CORRESPONDS TO THE SEQUENCE OF RBE3 (BARTEL, D.P., REMARK 5 ZAPP, M.L., GREEN, M.R., AND SZOSTAK, J.W. HIV-1 REV REMARK 5 REGULATION INVOLVES RECOGNITION OF NON-WATSON-CRICK REMARK 5 BASE-PAIRS IN VIRAL RNA. CELL, 67, 529-536 (1991)).
REMARK 6 REMARK 6 IN THIS ENTRY NUCLEOTIDE CYTOSINE 69 FORMS A BASE PAIR WITH REMARK 6 GUANINE 50 AND ADENINE 68 BULGES OUT FROM THE STRUCTURE. REMARK 6 IN PDB ENTRY 262D ADENINE 68 FORMS BASE PAIR WITH GUANINE REMARK 6 50 AND CYTOSINE 69 BULGES OUT FROM THE STRUCTURE.
REMARK 7 REMARK 7 CROSS REFERENCE TO SEQUENCE DATABASE REMARK 7 SWISS-PROT ENTRY- REV_HV1RH PDB ENTRY CHAIN - B
REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
DBREF 163D B 1 17 UNP P05872 REV_HV1SC 34 50
SEQRES 1 A 30 G G U G G G C G C A G C U SEQRES 2 A 30 U C G G C U G A C G G U A SEQRES 3 A 30 C A C C SEQRES 1 B 17 THR ARG GLN ALA ARG ARG ASN ARG ARG ARG ARG TRP ARG SEQRES 2 B 17 GLU ARG GLN ARG
HELIX 1 H1 THR B 1 ARG B 17 1 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000