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   Search term(s): GO:0006351

Here you see a subgraph of the complete GO graph, with your query GO:0006351 as the highest hiearchical level and all levels of lower hierarchy. The number of PDB entries, for which a UniProt entry annotated with the corresponding GO term is available, is shown in square brackets for all hiearchical levels of the subgraph.

• transcription, DNA-templated (GO:0006351)
  [12214 PDB entries]
  
  
• antisense RNA transcription (GO:0009300)
  • negative regulation of antisense RNA transcription (GO:0060195)
    [6 PDB entries]
    
    
  • positive regulation of antisense RNA transcription (GO:0060196)
  • regulation of antisense RNA transcription (GO:0060194)
    • negative regulation of antisense RNA transcription (GO:0060195)
      [6 PDB entries]
      
      
    • positive regulation of antisense RNA transcription (GO:0060196)
• bacterial transcription (GO:0001121)
  [1 PDB entries]
  
  
• promoter clearance from bacterial-type RNA polymerase promoter (GO:0001122)
• transcription elongation from bacterial-type RNA polymerase promoter (GO:0001124)
  [1 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from bacterial-type RNA polymerase promoter (GO:0001194)
• transcription initiation from bacterial-type RNA polymerase promoter (GO:0001123)
  [114 PDB entries]
  
  
• bacterial-type RNA polymerase preinitiation complex assembly (GO:0001126)
• transcriptional open complex formation at bacterial-type RNA polymerase promoter (GO:0001127)
• transcriptional start site selection at bacterial-type RNA polymerase promoter (GO:0001176)
• transcription termination from bacterial-type RNA polymerase promoter (GO:0001125)
• DNA-templated transcription, elongation (GO:0006354)
  [42 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation (GO:0001192)
  • maintenance of transcriptional fidelity during DNA-templated transcription elongation from bacterial-type RNA polymerase promoter (GO:0001194)
  • maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (GO:0001193)
    [130 PDB entries]
    
    
  • maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter (GO:0001195)
    [3 PDB entries]
    
    
• negative regulation of DNA-templated transcription, elongation (GO:0032785)
  [5 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• positive regulation of DNA-templated transcription, elongation (GO:0032786)
  [18 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• regulation of DNA-templated transcription, elongation (GO:0032784)
  [79 PDB entries]
  
  
• negative regulation of DNA-templated transcription, elongation (GO:0032785)
  [5 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• positive regulation of DNA-templated transcription, elongation (GO:0032786)
  [18 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• transcription elongation from bacterial-type RNA polymerase promoter (GO:0001124)
  [1 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from bacterial-type RNA polymerase promoter (GO:0001194)
• transcription elongation from mitochondrial promoter (GO:0006392)
  [13 PDB entries]
  
  
• transcription elongation from RNA polymerase I promoter (GO:0006362)
  [77 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001183)
• transcription elongation from RNA polymerase II promoter (GO:0006368)
  [325 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (GO:0001193)
  [130 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• transcription elongation from RNA polymerase III promoter (GO:0006385)
  [151 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter (GO:0001195)
  [3 PDB entries]
  
  
• DNA-templated transcription, initiation (GO:0006352)
  [481 PDB entries]
  
  
• DNA-templated transcriptional open complex formation (GO:0001112)
  [1 PDB entries]
  
  
• transcriptional open complex formation at bacterial-type RNA polymerase promoter (GO:0001127)
• transcriptional open complex formation at RNA polymerase II promoter (GO:0001113)
  [16 PDB entries]
  
  
• DNA-templated transcriptional start site selection (GO:0001173)
  • transcriptional start site selection at bacterial-type RNA polymerase promoter (GO:0001176)
  • transcriptional start site selection at RNA polymerase II promoter (GO:0001174)
    [16 PDB entries]
    
    
  • transcriptional start site selection at RNA polymerase III promoter (GO:0001175)
• negative regulation of DNA-templated transcription, initiation (GO:2000143)
  [14 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of DNA-templated transcription, initiation (GO:2000144)
  [52 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• regulation of DNA-templated transcription, initiation (GO:2000142)
  [19 PDB entries]
  
  
• negative regulation of DNA-templated transcription, initiation (GO:2000143)
  [14 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of DNA-templated transcription, initiation (GO:2000144)
  [52 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• transcription initiation from bacterial-type RNA polymerase promoter (GO:0001123)
  [114 PDB entries]
  
  
• bacterial-type RNA polymerase preinitiation complex assembly (GO:0001126)
• transcriptional open complex formation at bacterial-type RNA polymerase promoter (GO:0001127)
• transcriptional start site selection at bacterial-type RNA polymerase promoter (GO:0001176)
• transcription initiation from mitochondrial promoter (GO:0006391)
  [8 PDB entries]
  
  
• transcription initiation from RNA polymerase I promoter (GO:0006361)
  [50 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• RNA polymerase I preinitiation complex assembly (GO:0001188)
• transcription initiation from RNA polymerase II promoter (GO:0006367)
  [1554 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• RNA polymerase II preinitiation complex assembly (GO:0051123)
  [80 PDB entries]
  
  
• transcriptional open complex formation at RNA polymerase II promoter (GO:0001113)
  [16 PDB entries]
  
  
• transcriptional start site selection at RNA polymerase II promoter (GO:0001174)
  [16 PDB entries]
  
  
• transcription initiation from RNA polymerase III promoter (GO:0006384)
  [8 PDB entries]
  
  
• RNA polymerase III preinitiation complex assembly (GO:0070898)
  [21 PDB entries]
  
  
• transcriptional start site selection at RNA polymerase III promoter (GO:0001175)
• transcription preinitiation complex assembly (GO:0070897)
  • bacterial-type RNA polymerase preinitiation complex assembly (GO:0001126)
  • RNA polymerase I preinitiation complex assembly (GO:0001188)
  • RNA polymerase II preinitiation complex assembly (GO:0051123)
    [80 PDB entries]
    
    
  • RNA polymerase III preinitiation complex assembly (GO:0070898)
    [21 PDB entries]
    
    
• DNA-templated transcription, termination (GO:0006353)
  [328 PDB entries]
  
  
• negative regulation of DNA-templated transcription, termination (GO:0060567)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• positive regulation of DNA-templated transcription, termination (GO:0060566)
  [1 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• regulation of DNA-templated transcription, termination (GO:0031554)
  [18 PDB entries]
  
  
• negative regulation of DNA-templated transcription, termination (GO:0060567)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• positive regulation of DNA-templated transcription, termination (GO:0060566)
  [1 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• transcription antitermination (GO:0031564)
  [189 PDB entries]
  
  
• transcriptional attenuation (GO:0031555)
• termination of mitochondrial transcription (GO:0006393)
  [8 PDB entries]
  
  
• termination of RNA polymerase I transcription (GO:0006363)
  [70 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• termination of RNA polymerase II transcription (GO:0006369)
  [259 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• termination of RNA polymerase II transcription, exosome-dependent (GO:0030847)
  [18 PDB entries]
  
  
• termination of RNA polymerase II transcription, poly(A)-coupled (GO:0030846)
  [4 PDB entries]
  
  
• termination of RNA polymerase III transcription (GO:0006386)
  [140 PDB entries]
  
  
• transcription termination from bacterial-type RNA polymerase promoter (GO:0001125)
• transcription ternary complex disassembly (GO:0001118)
• mitochondrial transcription (GO:0006390)
  [10 PDB entries]
  
  
• mitochondrial rRNA transcription (GO:0042792)
• positive regulation of mitochondrial transcription (GO:1903109)
• regulation of mitochondrial transcription (GO:1903108)
  [1 PDB entries]
  
  
• positive regulation of mitochondrial transcription (GO:1903109)
• termination of mitochondrial transcription (GO:0006393)
  [8 PDB entries]
  
  
• transcription elongation from mitochondrial promoter (GO:0006392)
  [13 PDB entries]
  
  
• transcription initiation from mitochondrial promoter (GO:0006391)
  [8 PDB entries]
  
  
• mRNA transcription (GO:0009299)
  [55 PDB entries]
  
  
• mRNA transcription by RNA polymerase II (GO:0042789)
  [118 PDB entries]
  
  
• ncRNA transcription (GO:0098781)
  • ncRNA transcription associated with protein coding gene TSS/TES (GO:0098790)
    • negative regulation of ncRNA transcription associated with protein coding gene TSS/TES (GO:1904388)
  • rRNA transcription (GO:0009303)
    [103 PDB entries]
    
    
  • 5S class rRNA transcription by RNA polymerase III (GO:0042791)
    [5 PDB entries]
    
    
  • mitochondrial rRNA transcription (GO:0042792)
  • nucleolar large rRNA transcription by RNA polymerase I (GO:0042790)
    [44 PDB entries]
    
    
  • negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
    [14 PDB entries]
    
    
  • positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
    [39 PDB entries]
    
    
  • promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001184)
  • regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901836)
  • transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001183)
  • plastid rRNA transcription (GO:0042794)
  • snoRNA transcription (GO:0009302)
    • snoRNA transcription by RNA polymerase II (GO:0001015)
      [2 PDB entries]
      
      
    • snoRNA transcription by RNA polymerase III (GO:0001014)
  • snRNA transcription (GO:0009301)
    • snRNA transcription by RNA polymerase II (GO:0042795)
      [133 PDB entries]
      
      
    • negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
    • positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
    • regulation of snRNA transcription by RNA polymerase II (GO:1905380)
    • snRNA transcription by RNA polymerase III (GO:0042796)
      [1 PDB entries]
      
      
  • tRNA transcription (GO:0009304)
    • tRNA transcription by RNA polymerase III (GO:0042797)
      [142 PDB entries]
      
      
• negative regulation of transcription, DNA-templated (GO:0045892)
  [3391 PDB entries]
  
  
• carbon catabolite repression of transcription (GO:0045013)
  [47 PDB entries]
  
  
• carbon catabolite repression of transcription by galactose (GO:0000410)
• carbon catabolite repression of transcription by glucose (GO:0045014)
  [3 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• chromatin organization involved in negative regulation of transcription (GO:0097549)
• chromatin silencing (GO:0006342)
  [245 PDB entries]
  
  
• chromatin silencing at centromere (GO:0030702)
  [29 PDB entries]
  
  
• chromatin silencing at rDNA (GO:0000183)
  [427 PDB entries]
  
  
• chromatin silencing at silent mating-type cassette (GO:0030466)
  [105 PDB entries]
  
  
• chromatin silencing at subtelomere (GO:0099114)
• chromatin silencing at telomere (GO:0006348)
  [123 PDB entries]
  
  
• chromatin silencing by small RNA (GO:0031048)
  [23 PDB entries]
  
  
• establishment of chromatin silencing (GO:0006343)
  [25 PDB entries]
  
  
• heterochromatin organization involved in chromatin silencing (GO:0070868)
  [11 PDB entries]
  
  
• maintenance of chromatin silencing (GO:0006344)
  [20 PDB entries]
  
  
• methylation-dependent chromatin silencing (GO:0006346)
  [32 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• positive regulation of chromatin silencing (GO:0031937)
  [23 PDB entries]
  
  
• regulation of chromatin silencing (GO:0031935)
  [5 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• positive regulation of chromatin silencing (GO:0031937)
  [23 PDB entries]
  
  
• regulation of chromatin silencing at centromere (GO:0090052)
  [5 PDB entries]
  
  
• regulation of chromatin silencing at rDNA (GO:0061187)
  [12 PDB entries]
  
  
• regulation of chromatin silencing at silent mating-type cassette (GO:0090054)
• regulation of chromatin silencing at telomere (GO:0031938)
  [17 PDB entries]
  
  
• regulation of chromatin silencing by small RNA (GO:0010964)
• regulation of methylation-dependent chromatin silencing (GO:0090308)
  [45 PDB entries]
  
  
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• negative regulation of antisense RNA transcription (GO:0060195)
  [6 PDB entries]
  
  
• negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated (GO:0010678)
  • negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of DNA-templated transcription, elongation (GO:0032785)
  [5 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of DNA-templated transcription, initiation (GO:2000143)
  [14 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• negative regulation of DNA-templated transcription, termination (GO:0060567)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of mating-type specific transcription, DNA-templated (GO:0045894)
  • negative regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001198)
    [9 PDB entries]
    
    
• negative regulation of ncRNA transcription associated with protein coding gene TSS/TES (GO:1904388)
• negative regulation of transcription by competitive promoter binding (GO:0010944)
  [25 PDB entries]
  
  
• negative regulation of transcription by pheromones (GO:0045996)
  • negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
    [1 PDB entries]
    
    
• negative regulation of transcription by RNA polymerase I (GO:0016479)
  [19 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase II (GO:0000122)
  [4571 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter (GO:1900387)
• negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter (GO:1900464)
• negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (GO:1900463)
• negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (GO:0061427)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter (GO:1902352)
• negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter (GO:1900477)
• negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter (GO:1902625)
  [1 PDB entries]
  
  
• negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter (GO:1900460)
• negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (GO:1900474)
• negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (GO:1904490)
• negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904089)
• negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter (GO:0035952)
• negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900473)
• negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (GO:1900462)
• negative regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0010688)
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903758)
  [4 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
  [1 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061398)
• negative regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034396)
• negative regulation of transcription from RNA polymerase II promoter in response to stress (GO:0097201)
• negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (GO:0010768)
  [14 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901227)
  [3 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000820)
  [1 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (GO:0035949)
• regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072365)
  [14 PDB entries]
  
  
• regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072362)
  [6 PDB entries]
  
  
• regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (GO:0072368)
  [7 PDB entries]
  
  
• regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904489)
• regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase III (GO:0016480)
  [13 PDB entries]
  
  
• negative regulation of RNA polymerase III activity (GO:1903623)
• negative regulation of transcription by RNA polymerase V (GO:1904280)
• negative regulation of transcription by transcription factor catabolism (GO:0010620)
• negative regulation of transcription by transcription factor localization (GO:0010621)
  [2 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by transcription factor localization involved in response to DNA damage checkpoint signaling (GO:1990260)
• negative regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071930)
  [18 PDB entries]
  
  
• negative regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090419)
• negative regulation of transcription involved in meiotic cell cycle (GO:0051038)
  • negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• nitrogen catabolite repression of transcription (GO:0090295)
  [8 PDB entries]
  
  
• nitrogen catabolite repression of transcription from RNA polymerase II promoter (GO:0001081)
  [8 PDB entries]
  
  
• plastid transcription (GO:0042793)
  • plastid rRNA transcription (GO:0042794)
• positive regulation of transcription, DNA-templated (GO:0045893)
  [4194 PDB entries]
  
  
• carbon catabolite activation of transcription (GO:0045991)
  • carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
    [8 PDB entries]
    
    
  • positive regulation of transcription by galactose (GO:0000411)
    [1 PDB entries]
    
    
  • positive regulation of transcription by glucose (GO:0046016)
    [3 PDB entries]
    
    
  • positive regulation of transcription by oleic acid (GO:0061421)
• chromatin-mediated maintenance of transcription (GO:0048096)
  [199 PDB entries]
  
  
• negative regulation of chromatin-mediated maintenance of transcription (GO:1904500)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• regulation of chromatin-mediated maintenance of transcription (GO:1904499)
  [16 PDB entries]
  
  
• negative regulation of chromatin-mediated maintenance of transcription (GO:1904500)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• nitrogen catabolite activation of transcription (GO:0090294)
  • nitrogen catabolite activation of transcription from RNA polymerase II promoter (GO:0001080)
    [193 PDB entries]
    
    
• positive regulation of antisense RNA transcription (GO:0060196)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• positive regulation of DNA-templated transcription, elongation (GO:0032786)
  [18 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of DNA-templated transcription, initiation (GO:2000144)
  [52 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of DNA-templated transcription, termination (GO:0060566)
  [1 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of mating-type specific transcription, DNA-templated (GO:0045895)
  • positive regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001197)
    [1 PDB entries]
    
    
• positive regulation of mitochondrial transcription (GO:1903109)
• positive regulation of transcription by pheromones (GO:0009371)
  • positive regulation of transcription from RNA polymerase II promoter by pheromones (GO:0007329)
    [14 PDB entries]
    
    
• positive regulation of transcription by RNA polymerase I (GO:0045943)
  [60 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase II (GO:0045944)
  [6300 PDB entries]
  
  
• carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
  [8 PDB entries]
  
  
• positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of central gap gene transcription (GO:0007357)
• positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035961)
  [3 PDB entries]
  
  
• positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
  [6 PDB entries]
  
  
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter (GO:1904741)
  [1 PDB entries]
  
  
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (GO:1900524)
• positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter (GO:0035948)
  [98 PDB entries]
  
  
• positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900375)
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (GO:0035951)
• positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
  [6 PDB entries]
  
  
• positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900413)
  [2 PDB entries]
  
  
• positive regulation of posterior gap gene transcription (GO:0007360)
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter (GO:1900461)
• positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900418)
• positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060963)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
• positive regulation of SREBP signaling pathway (GO:2000640)
  [3 PDB entries]
  
  
• positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035957)
• positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter (GO:1900478)
• positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• positive regulation of terminal gap gene transcription (GO:0007363)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900622)
• positive regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903757)
• positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
  [48 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
  [1 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to stress (GO:0036003)
  [22 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus (GO:1901522)
  [119 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (GO:1901244)
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (GO:1902097)
• positive regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901228)
  [3 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation (GO:1904081)
• positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process (GO:2000763)
• positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000721)
• positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion (GO:1902901)
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• positive regulation of transcription of Notch receptor target (GO:0007221)
  [40 PDB entries]
  
  
• positive regulation of transcription via serum response element binding (GO:0010735)
  [13 PDB entries]
  
  
• regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072366)
  [18 PDB entries]
  
  
• regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072363)
  [35 PDB entries]
  
  
• regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
  [23 PDB entries]
  
  
• regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter (GO:0097301)
• regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1904488)
• SREBP signaling pathway (GO:0032933)
  [10 PDB entries]
  
  
• transcriptional activation by promoter-enhancer looping (GO:0071733)
  [13 PDB entries]
  
  
• transcriptional activation by promoter-terminator looping (GO:0090203)
• positive regulation of transcription by RNA polymerase III (GO:0045945)
  [146 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase V (GO:1904281)
• positive regulation of transcription by transcription factor localization (GO:0061586)
• positive regulation of transcription from a mobile element promoter (GO:0061435)
• positive regulation of transcription involved in egg activation (GO:0060469)
• positive regulation of transcription involved in exit from mitosis (GO:0007072)
  [1 PDB entries]
  
  
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase I promoter (GO:0007073)
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase II promoter (GO:0007074)
  [2 PDB entries]
  
  
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase III promoter (GO:0007075)
• positive regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071931)
  [16 PDB entries]
  
  
• positive regulation of transcription involved in meiotic cell cycle (GO:0051039)
  [5 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• promoter clearance during DNA-templated transcription (GO:0001109)
  • promoter clearance from bacterial-type RNA polymerase promoter (GO:0001122)
  • promoter clearance from RNA polymerase I promoter (GO:0001182)
    • promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001184)
  • promoter clearance from RNA polymerase II promoter (GO:0001111)
    [12 PDB entries]
    
    
  • promoter clearance from RNA polymerase III promoter (GO:0001110)
• regulation of transcription, DNA-templated (GO:0006355)
  [12284 PDB entries]
  
  
• carbon catabolite regulation of transcription (GO:0045990)
  [1 PDB entries]
  
  
• carbon catabolite activation of transcription (GO:0045991)
  • carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
    [8 PDB entries]
    
    
  • positive regulation of transcription by galactose (GO:0000411)
    [1 PDB entries]
    
    
  • positive regulation of transcription by glucose (GO:0046016)
    [3 PDB entries]
    
    
  • positive regulation of transcription by oleic acid (GO:0061421)
• carbon catabolite regulation of transcription from RNA polymerase II promoter (GO:0000429)
• carbon catabolite repression of transcription (GO:0045013)
  [47 PDB entries]
  
  
• carbon catabolite repression of transcription by galactose (GO:0000410)
• carbon catabolite repression of transcription by glucose (GO:0045014)
  [3 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• chromatin organization involved in regulation of transcription (GO:0034401)
  [7 PDB entries]
  
  
• negative regulation of transcription, DNA-templated (GO:0045892)
  [3391 PDB entries]
  
  
• carbon catabolite repression of transcription (GO:0045013)
  [47 PDB entries]
  
  
• carbon catabolite repression of transcription by galactose (GO:0000410)
• carbon catabolite repression of transcription by glucose (GO:0045014)
  [3 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• chromatin organization involved in negative regulation of transcription (GO:0097549)
• chromatin silencing (GO:0006342)
  [245 PDB entries]
  
  
• chromatin silencing at centromere (GO:0030702)
  [29 PDB entries]
  
  
• chromatin silencing at rDNA (GO:0000183)
  [427 PDB entries]
  
  
• chromatin silencing at silent mating-type cassette (GO:0030466)
  [105 PDB entries]
  
  
• chromatin silencing at subtelomere (GO:0099114)
• chromatin silencing at telomere (GO:0006348)
  [123 PDB entries]
  
  
• chromatin silencing by small RNA (GO:0031048)
  [23 PDB entries]
  
  
• establishment of chromatin silencing (GO:0006343)
  [25 PDB entries]
  
  
• heterochromatin organization involved in chromatin silencing (GO:0070868)
  [11 PDB entries]
  
  
• maintenance of chromatin silencing (GO:0006344)
  [20 PDB entries]
  
  
• methylation-dependent chromatin silencing (GO:0006346)
  [32 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• positive regulation of chromatin silencing (GO:0031937)
  [23 PDB entries]
  
  
• regulation of chromatin silencing (GO:0031935)
  [5 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• positive regulation of chromatin silencing (GO:0031937)
  [23 PDB entries]
  
  
• regulation of chromatin silencing at centromere (GO:0090052)
  [5 PDB entries]
  
  
• regulation of chromatin silencing at rDNA (GO:0061187)
  [12 PDB entries]
  
  
• regulation of chromatin silencing at silent mating-type cassette (GO:0090054)
• regulation of chromatin silencing at telomere (GO:0031938)
  [17 PDB entries]
  
  
• regulation of chromatin silencing by small RNA (GO:0010964)
• regulation of methylation-dependent chromatin silencing (GO:0090308)
  [45 PDB entries]
  
  
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• negative regulation of antisense RNA transcription (GO:0060195)
  [6 PDB entries]
  
  
• negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated (GO:0010678)
  • negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of DNA-templated transcription, elongation (GO:0032785)
  [5 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of DNA-templated transcription, initiation (GO:2000143)
  [14 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• negative regulation of DNA-templated transcription, termination (GO:0060567)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of mating-type specific transcription, DNA-templated (GO:0045894)
  • negative regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001198)
    [9 PDB entries]
    
    
• negative regulation of ncRNA transcription associated with protein coding gene TSS/TES (GO:1904388)
• negative regulation of transcription by competitive promoter binding (GO:0010944)
  [25 PDB entries]
  
  
• negative regulation of transcription by pheromones (GO:0045996)
  • negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
    [1 PDB entries]
    
    
• negative regulation of transcription by RNA polymerase I (GO:0016479)
  [19 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase II (GO:0000122)
  [4571 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter (GO:1900387)
• negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter (GO:1900464)
• negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (GO:1900463)
• negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (GO:0061427)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter (GO:1902352)
• negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter (GO:1900477)
• negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter (GO:1902625)
  [1 PDB entries]
  
  
• negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter (GO:1900460)
• negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (GO:1900474)
• negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (GO:1904490)
• negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904089)
• negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter (GO:0035952)
• negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900473)
• negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (GO:1900462)
• negative regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0010688)
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903758)
  [4 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
  [1 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061398)
• negative regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034396)
• negative regulation of transcription from RNA polymerase II promoter in response to stress (GO:0097201)
• negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (GO:0010768)
  [14 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901227)
  [3 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000820)
  [1 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (GO:0035949)
• regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072365)
  [14 PDB entries]
  
  
• regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072362)
  [6 PDB entries]
  
  
• regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (GO:0072368)
  [7 PDB entries]
  
  
• regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904489)
• regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase III (GO:0016480)
  [13 PDB entries]
  
  
• negative regulation of RNA polymerase III activity (GO:1903623)
• negative regulation of transcription by RNA polymerase V (GO:1904280)
• negative regulation of transcription by transcription factor catabolism (GO:0010620)
• negative regulation of transcription by transcription factor localization (GO:0010621)
  [2 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by transcription factor localization involved in response to DNA damage checkpoint signaling (GO:1990260)
• negative regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071930)
  [18 PDB entries]
  
  
• negative regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090419)
• negative regulation of transcription involved in meiotic cell cycle (GO:0051038)
  • negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• nitrogen catabolite repression of transcription (GO:0090295)
  [8 PDB entries]
  
  
• nitrogen catabolite repression of transcription from RNA polymerase II promoter (GO:0001081)
  [8 PDB entries]
  
  
• nitrogen catabolite regulation of transcription (GO:0090293)
  • nitrogen catabolite activation of transcription (GO:0090294)
    • nitrogen catabolite activation of transcription from RNA polymerase II promoter (GO:0001080)
      [193 PDB entries]
      
      
  • nitrogen catabolite regulation of transcription from RNA polymerase II promoter (GO:0001079)
  • nitrogen catabolite repression of transcription (GO:0090295)
    [8 PDB entries]
    
    
  • nitrogen catabolite repression of transcription from RNA polymerase II promoter (GO:0001081)
    [8 PDB entries]
    
    
• positive regulation of transcription, DNA-templated (GO:0045893)
  [4194 PDB entries]
  
  
• carbon catabolite activation of transcription (GO:0045991)
  • carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
    [8 PDB entries]
    
    
  • positive regulation of transcription by galactose (GO:0000411)
    [1 PDB entries]
    
    
  • positive regulation of transcription by glucose (GO:0046016)
    [3 PDB entries]
    
    
  • positive regulation of transcription by oleic acid (GO:0061421)
• chromatin-mediated maintenance of transcription (GO:0048096)
  [199 PDB entries]
  
  
• negative regulation of chromatin-mediated maintenance of transcription (GO:1904500)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• regulation of chromatin-mediated maintenance of transcription (GO:1904499)
  [16 PDB entries]
  
  
• negative regulation of chromatin-mediated maintenance of transcription (GO:1904500)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• nitrogen catabolite activation of transcription (GO:0090294)
  • nitrogen catabolite activation of transcription from RNA polymerase II promoter (GO:0001080)
    [193 PDB entries]
    
    
• positive regulation of antisense RNA transcription (GO:0060196)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• positive regulation of DNA-templated transcription, elongation (GO:0032786)
  [18 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of DNA-templated transcription, initiation (GO:2000144)
  [52 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of DNA-templated transcription, termination (GO:0060566)
  [1 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of mating-type specific transcription, DNA-templated (GO:0045895)
  • positive regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001197)
    [1 PDB entries]
    
    
• positive regulation of mitochondrial transcription (GO:1903109)
• positive regulation of transcription by pheromones (GO:0009371)
  • positive regulation of transcription from RNA polymerase II promoter by pheromones (GO:0007329)
    [14 PDB entries]
    
    
• positive regulation of transcription by RNA polymerase I (GO:0045943)
  [60 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase II (GO:0045944)
  [6300 PDB entries]
  
  
• carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
  [8 PDB entries]
  
  
• positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of central gap gene transcription (GO:0007357)
• positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035961)
  [3 PDB entries]
  
  
• positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
  [6 PDB entries]
  
  
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter (GO:1904741)
  [1 PDB entries]
  
  
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (GO:1900524)
• positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter (GO:0035948)
  [98 PDB entries]
  
  
• positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900375)
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (GO:0035951)
• positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
  [6 PDB entries]
  
  
• positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900413)
  [2 PDB entries]
  
  
• positive regulation of posterior gap gene transcription (GO:0007360)
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter (GO:1900461)
• positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900418)
• positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060963)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
• positive regulation of SREBP signaling pathway (GO:2000640)
  [3 PDB entries]
  
  
• positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035957)
• positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter (GO:1900478)
• positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• positive regulation of terminal gap gene transcription (GO:0007363)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900622)
• positive regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903757)
• positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
  [48 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
  [1 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to stress (GO:0036003)
  [22 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus (GO:1901522)
  [119 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (GO:1901244)
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (GO:1902097)
• positive regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901228)
  [3 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation (GO:1904081)
• positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process (GO:2000763)
• positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000721)
• positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion (GO:1902901)
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• positive regulation of transcription of Notch receptor target (GO:0007221)
  [40 PDB entries]
  
  
• positive regulation of transcription via serum response element binding (GO:0010735)
  [13 PDB entries]
  
  
• regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072366)
  [18 PDB entries]
  
  
• regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072363)
  [35 PDB entries]
  
  
• regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
  [23 PDB entries]
  
  
• regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter (GO:0097301)
• regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1904488)
• SREBP signaling pathway (GO:0032933)
  [10 PDB entries]
  
  
• transcriptional activation by promoter-enhancer looping (GO:0071733)
  [13 PDB entries]
  
  
• transcriptional activation by promoter-terminator looping (GO:0090203)
• positive regulation of transcription by RNA polymerase III (GO:0045945)
  [146 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase V (GO:1904281)
• positive regulation of transcription by transcription factor localization (GO:0061586)
• positive regulation of transcription from a mobile element promoter (GO:0061435)
• positive regulation of transcription involved in egg activation (GO:0060469)
• positive regulation of transcription involved in exit from mitosis (GO:0007072)
  [1 PDB entries]
  
  
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase I promoter (GO:0007073)
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase II promoter (GO:0007074)
  [2 PDB entries]
  
  
• positive regulation of transcription involved in exit from mitosis, from RNA polymerase III promoter (GO:0007075)
• positive regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071931)
  [16 PDB entries]
  
  
• positive regulation of transcription involved in meiotic cell cycle (GO:0051039)
  [5 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• regulation of antisense RNA transcription (GO:0060194)
  • negative regulation of antisense RNA transcription (GO:0060195)
    [6 PDB entries]
    
    
  • positive regulation of antisense RNA transcription (GO:0060196)
• regulation of chromatin silencing (GO:0031935)
  [5 PDB entries]
  
  
• negative regulation of chromatin silencing (GO:0031936)
  [65 PDB entries]
  
  
• negative regulation of chromatin silencing at rDNA (GO:0061188)
  [12 PDB entries]
  
  
• negative regulation of chromatin silencing at silent mating-type cassette (GO:0061186)
  [1 PDB entries]
  
  
• negative regulation of chromatin silencing at telomere (GO:0031939)
  [22 PDB entries]
  
  
• negative regulation of chromatin silencing by small RNA (GO:0060906)
• negative regulation of chromatin silencing involved in replicative cell aging (GO:0001308)
  [19 PDB entries]
  
  
• negative regulation of methylation-dependent chromatin silencing (GO:0090310)
  [1 PDB entries]
  
  
• positive regulation of chromatin silencing (GO:0031937)
  [23 PDB entries]
  
  
• regulation of chromatin silencing at centromere (GO:0090052)
  [5 PDB entries]
  
  
• regulation of chromatin silencing at rDNA (GO:0061187)
  [12 PDB entries]
  
  
• regulation of chromatin silencing at silent mating-type cassette (GO:0090054)
• regulation of chromatin silencing at telomere (GO:0031938)
  [17 PDB entries]
  
  
• regulation of chromatin silencing by small RNA (GO:0010964)
• regulation of methylation-dependent chromatin silencing (GO:0090308)
  [45 PDB entries]
  
  
• regulation of chromatin-mediated maintenance of transcription (GO:1904499)
  [16 PDB entries]
  
  
• negative regulation of chromatin-mediated maintenance of transcription (GO:1904500)
• positive regulation of chromatin-mediated maintenance of transcription (GO:1904501)
  [34 PDB entries]
  
  
• regulation of DNA-binding transcription factor activity (GO:0051090)
  [569 PDB entries]
  
  
• negative regulation of DNA-binding transcription factor activity (GO:0043433)
  [1077 PDB entries]
  
  
• negative regulation of hh target transcription factor activity (GO:1990787)
• positive regulation of DNA-binding transcription factor activity (GO:0051091)
  [1265 PDB entries]
  
  
• regulation of androgen receptor activity (GO:2000823)
• regulation of thyroid hormone receptor activity (GO:1904167)
• regulation of DNA-templated transcription in response to stress (GO:0043620)
  [29 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter in response to stress (GO:0043618)
  [33 PDB entries]
  
  
• regulation of DNA-templated transcription, elongation (GO:0032784)
  [79 PDB entries]
  
  
• negative regulation of DNA-templated transcription, elongation (GO:0032785)
  [5 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• positive regulation of DNA-templated transcription, elongation (GO:0032786)
  [18 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• regulation of DNA-templated transcription, initiation (GO:2000142)
  [19 PDB entries]
  
  
• negative regulation of DNA-templated transcription, initiation (GO:2000143)
  [14 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of DNA-templated transcription, initiation (GO:2000144)
  [52 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• regulation of DNA-templated transcription, termination (GO:0031554)
  [18 PDB entries]
  
  
• negative regulation of DNA-templated transcription, termination (GO:0060567)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• positive regulation of DNA-templated transcription, termination (GO:0060566)
  [1 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• transcription antitermination (GO:0031564)
  [189 PDB entries]
  
  
• transcriptional attenuation (GO:0031555)
• regulation of mating-type specific transcription, DNA-templated (GO:0007532)
  [6 PDB entries]
  
  
• negative regulation of mating-type specific transcription, DNA-templated (GO:0045894)
  • negative regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001198)
    [9 PDB entries]
    
    
• positive regulation of mating-type specific transcription, DNA-templated (GO:0045895)
  • positive regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001197)
    [1 PDB entries]
    
    
• regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001196)
• regulation of mitochondrial transcription (GO:1903108)
  [1 PDB entries]
  
  
• positive regulation of mitochondrial transcription (GO:1903109)
• regulation of transcription by carbon monoxide (GO:0070028)
• regulation of transcription by galactose (GO:0000409)
  • carbon catabolite repression of transcription by galactose (GO:0000410)
  • positive regulation of transcription by galactose (GO:0000411)
    [1 PDB entries]
    
    
  • regulation of transcription from RNA polymerase II promoter by galactose (GO:0000431)
• regulation of transcription by glucose (GO:0046015)
  [11 PDB entries]
  
  
• negative regulation of transcription by glucose (GO:0061986)
• positive regulation of transcription by glucose (GO:0046016)
  [3 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter by glucose (GO:0000430)
  [1 PDB entries]
  
  
• regulation of transcription by pheromones (GO:0009373)
  • negative regulation of transcription by pheromones (GO:0045996)
    • negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
      [1 PDB entries]
      
      
  • positive regulation of transcription by pheromones (GO:0009371)
    • positive regulation of transcription from RNA polymerase II promoter by pheromones (GO:0007329)
      [14 PDB entries]
      
      
  • regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046019)
• regulation of transcription by RNA polymerase I (GO:0006356)
  [85 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase I (GO:0016479)
  [19 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase I (GO:0045943)
  [60 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901836)
• regulation of transcription by RNA polymerase II (GO:0006357)
  [1919 PDB entries]
  
  
• BMP signaling pathway (GO:0030509)
  [183 PDB entries]
  
  
• carbon catabolite regulation of transcription from RNA polymerase II promoter (GO:0000429)
• dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940)
  [34 PDB entries]
  
  
• negative regulation of leucine import by regulation of transcription from RNA polymerase II promoter (GO:1902574)
• negative regulation of transcription by RNA polymerase II (GO:0000122)
  [4571 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter (GO:1900387)
• negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter (GO:1900464)
• negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (GO:1900463)
• negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (GO:0061427)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter (GO:1902352)
• negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter (GO:1900477)
• negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter (GO:1902625)
  [1 PDB entries]
  
  
• negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter (GO:1900460)
• negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (GO:1900474)
• negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (GO:1904490)
• negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904089)
• negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter (GO:0035952)
• negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900473)
• negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (GO:1900462)
• negative regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0010688)
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903758)
  [4 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
  [1 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061398)
• negative regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034396)
• negative regulation of transcription from RNA polymerase II promoter in response to stress (GO:0097201)
• negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (GO:0010768)
  [14 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901227)
  [3 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000820)
  [1 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (GO:0035949)
• regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072365)
  [14 PDB entries]
  
  
• regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072362)
  [6 PDB entries]
  
  
• regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (GO:0072368)
  [7 PDB entries]
  
  
• regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904489)
• regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• nitrogen catabolite regulation of transcription from RNA polymerase II promoter (GO:0001079)
• phosphorylation of RNA polymerase II C-terminal domain (GO:0070816)
  [26 PDB entries]
  
  
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter (GO:1900374)
• positive regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (GO:1900546)
• positive regulation of transcription by RNA polymerase II (GO:0045944)
  [6300 PDB entries]
  
  
• carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
  [8 PDB entries]
  
  
• positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of central gap gene transcription (GO:0007357)
• positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035961)
  [3 PDB entries]
  
  
• positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
  [6 PDB entries]
  
  
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter (GO:1904741)
  [1 PDB entries]
  
  
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (GO:1900524)
• positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter (GO:0035948)
  [98 PDB entries]
  
  
• positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900375)
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (GO:0035951)
• positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
  [6 PDB entries]
  
  
• positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900413)
  [2 PDB entries]
  
  
• positive regulation of posterior gap gene transcription (GO:0007360)
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter (GO:1900461)
• positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900418)
• positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060963)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
• positive regulation of SREBP signaling pathway (GO:2000640)
  [3 PDB entries]
  
  
• positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035957)
• positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter (GO:1900478)
• positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• positive regulation of terminal gap gene transcription (GO:0007363)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900622)
• positive regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903757)
• positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
  [48 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
  [1 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to stress (GO:0036003)
  [22 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus (GO:1901522)
  [119 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (GO:1901244)
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (GO:1902097)
• positive regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901228)
  [3 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation (GO:1904081)
• positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process (GO:2000763)
• positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000721)
• positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion (GO:1902901)
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• positive regulation of transcription of Notch receptor target (GO:0007221)
  [40 PDB entries]
  
  
• positive regulation of transcription via serum response element binding (GO:0010735)
  [13 PDB entries]
  
  
• regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072366)
  [18 PDB entries]
  
  
• regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072363)
  [35 PDB entries]
  
  
• regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
  [23 PDB entries]
  
  
• regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter (GO:0097301)
• regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1904488)
• SREBP signaling pathway (GO:0032933)
  [10 PDB entries]
  
  
• transcriptional activation by promoter-enhancer looping (GO:0071733)
  [13 PDB entries]
  
  
• transcriptional activation by promoter-terminator looping (GO:0090203)
• regulation of androgen receptor activity (GO:2000823)
• regulation of BMP signaling pathway (GO:0030510)
  [79 PDB entries]
  
  
• regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter (GO:1900402)
• regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter (GO:0072364)
• regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter (GO:1900427)
• regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter (GO:1900406)
  [1 PDB entries]
  
  
• regulation of ergosterol biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:0035960)
• regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter (GO:1900415)
• regulation of glucose import by regulation of transcription from RNA polymerase II promoter (GO:1900389)
• regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter (GO:1900393)
• regulation of lipid transport by regulation of transcription from RNA polymerase II promoter (GO:0072367)
• regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001196)
• regulation of nodal signaling pathway involved in determination of left/right asymmetry (GO:1900145)
• regulation of oligopeptide transport by regulation of transcription from RNA polymerase II promoter (GO:0035950)
• regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (GO:1900545)
• regulation of phosphorylation of RNA polymerase II C-terminal domain (GO:1901407)
  [211 PDB entries]
  
  
• regulation of pri-miRNA transcription by RNA polymerase II (GO:1902893)
• regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900448)
• regulation of replicative cell aging by regulation of transcription from RNA polymerase II promoter in response to caloric restriction (GO:0061434)
• regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060962)
• regulation of snRNA transcription by RNA polymerase II (GO:1905380)
• regulation of SREBP signaling pathway (GO:2000638)
• regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901580)
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:1900382)
• regulation of thyroid hormone receptor activity (GO:1904167)
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900621)
• regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903756)
• regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046019)
• regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061396)
• regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034395)
  [52 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter in response to methionine (GO:0061432)
• regulation of transcription from RNA polymerase II promoter in response to stress (GO:0043618)
  [33 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry (GO:1900094)
• regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901213)
• regulation of transcription from RNA polymerase II promoter involved in kidney development (GO:0060994)
• regulation of transcription from RNA polymerase II promoter involved in lung bud formation (GO:0060500)
• regulation of transcription from RNA polymerase II promoter involved in mammary gland formation (GO:0060597)
• regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010672)
• regulation of transcription from RNA polymerase II promoter involved in somitogenesis (GO:0090236)
• regulation of transcription from RNA polymerase II promoter involved in spermatogenesis (GO:1902064)
• regulation of transcription from RNA polymerase II promoter involved in spinal cord anterior-posterior patterning (GO:0021909)
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• regulation of transcription involved in anterior neural plate formation (GO:0090019)
• regulation of transcription involved in anterior/posterior axis specification (GO:0044324)
  [1 PDB entries]
  
  
• regulation of transcription involved in cell fate commitment (GO:0060850)
  [229 PDB entries]
  
  
• regulation of transcription involved in posterior neural plate formation (GO:0090020)
• regulation of transcription by RNA polymerase III (GO:0006359)
  [60 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase III (GO:0016480)
  [13 PDB entries]
  
  
• negative regulation of RNA polymerase III activity (GO:1903623)
• positive regulation of transcription by RNA polymerase III (GO:0045945)
  [146 PDB entries]
  
  
• regulation of RNA polymerase III activity (GO:1903622)
• regulation of transcription by RNA polymerase V (GO:1904279)
  • negative regulation of transcription by RNA polymerase V (GO:1904280)
  • positive regulation of transcription by RNA polymerase V (GO:1904281)
• regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0000083)
  [427 PDB entries]
  
  
• negative regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071930)
  [18 PDB entries]
  
  
• positive regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071931)
  [16 PDB entries]
  
  
• regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0000117)
  [2 PDB entries]
  
  
• negative regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090419)
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• regulation of transcription involved in meiotic cell cycle (GO:0051037)
  • negative regulation of transcription involved in meiotic cell cycle (GO:0051038)
    • negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
  • positive regulation of transcription involved in meiotic cell cycle (GO:0051039)
    [5 PDB entries]
    
    
  • positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
  • regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010672)
• telomeric repeat-containing RNA transcription (GO:0097393)
  • telomeric repeat-containing RNA transcription by RNA polymerase II (GO:0097394)
    [5 PDB entries]
    
    
  • negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
    [9 PDB entries]
    
    
  • positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
    [8 PDB entries]
    
    
  • regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901580)
• transcription by RNA polymerase I (GO:0006360)
  [168 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase I (GO:0016479)
  [19 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• nucleolar large rRNA transcription by RNA polymerase I (GO:0042790)
  [44 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001184)
• regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901836)
• transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001183)
• positive regulation of transcription by RNA polymerase I (GO:0045943)
  [60 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• promoter clearance from RNA polymerase I promoter (GO:0001182)
  • promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001184)
• regulation of transcription by RNA polymerase I (GO:0006356)
  [85 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase I (GO:0016479)
  [19 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901837)
  [14 PDB entries]
  
  
• positive regulation of transcription by RNA polymerase I (GO:0045943)
  [60 PDB entries]
  
  
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901838)
  [39 PDB entries]
  
  
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• regulation of transcription of nucleolar large rRNA by RNA polymerase I (GO:1901836)
• termination of RNA polymerase I transcription (GO:0006363)
  [70 PDB entries]
  
  
• negative regulation of termination of RNA polymerase I transcription (GO:2000731)
• positive regulation of termination of RNA polymerase I transcription (GO:2000732)
• regulation of termination of RNA polymerase I transcription (GO:2000730)
• transcription elongation from RNA polymerase I promoter (GO:0006362)
  [77 PDB entries]
  
  
• negative regulation of transcription elongation by RNA polymerase I (GO:2001208)
  [3 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase I promoter (GO:2001209)
  [7 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase I promoter (GO:2001207)
• transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript (GO:0001183)
• transcription initiation from RNA polymerase I promoter (GO:0006361)
  [50 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase I promoter (GO:1903357)
  [4 PDB entries]
  
  
• RNA polymerase I preinitiation complex assembly (GO:0001188)
• transcription by RNA polymerase II (GO:0006366)
  [2126 PDB entries]
  
  
• mRNA transcription by RNA polymerase II (GO:0042789)
  [118 PDB entries]
  
  
• negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter (GO:0100045)
  • negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900465)
    [1 PDB entries]
    
    
• negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter (GO:0100017)
• negative regulation of cellular amino acid biosynthetic process by transcription from RNA polymerase II promoter (GO:0100025)
• negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter (GO:0100044)
• negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter (GO:0100043)
• negative regulation of ceramide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100007)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter (GO:0100064)
• negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter (GO:0100052)
• negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter (GO:0100040)
• negative regulation of mating type switching by transcription from RNA polymerase II promoter (GO:0100050)
• negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter (GO:0100069)
• negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100049)
• negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100056)
  • negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter (GO:0100042)
• negative regulation of transcription by RNA polymerase II (GO:0000122)
  [4571 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter (GO:1900387)
• negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter (GO:1900464)
• negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (GO:1900463)
• negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (GO:0061427)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter (GO:1902352)
• negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter (GO:1900477)
• negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter (GO:1902625)
  [1 PDB entries]
  
  
• negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter (GO:1900460)
• negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (GO:1900474)
• negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (GO:1904490)
• negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904089)
• negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter (GO:0035952)
• negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900473)
• negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (GO:1900462)
• negative regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0010688)
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903758)
  [4 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
  [1 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061398)
• negative regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034396)
• negative regulation of transcription from RNA polymerase II promoter in response to stress (GO:0097201)
• negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (GO:0010768)
  [14 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901227)
  [3 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000820)
  [1 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (GO:0035949)
• regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072365)
  [14 PDB entries]
  
  
• regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072362)
  [6 PDB entries]
  
  
• regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (GO:0072368)
  [7 PDB entries]
  
  
• regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904489)
• regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100046)
• positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter (GO:0100037)
  • positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of DNA repair by transcription from RNA polymerase II promoter (GO:0100026)
  • positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ethanol catabolic process by transcription from RNA polymerase II promoter (GO:0100005)
• positive regulation of fatty acid beta-oxidation by transcription from RNA polymerase II promoter (GO:0100013)
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter (GO:1904740)
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by transcription from RNA polymerase II promoter (GO:0100054)
• positive regulation of mating type switching by transcription from RNA polymerase II promoter (GO:0100014)
  • positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of peroxisome organization by transcription from RNA polymerase II promoter (GO:0100004)
• positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter (GO:0100032)
  • positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100048)
  • positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100055)
• positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter (GO:0100041)
• positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100036)
• positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter (GO:0100068)
  • positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter (GO:0100053)
• positive regulation of transcription by RNA polymerase II (GO:0045944)
  [6300 PDB entries]
  
  
• carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
  [8 PDB entries]
  
  
• positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of central gap gene transcription (GO:0007357)
• positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035961)
  [3 PDB entries]
  
  
• positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
  [6 PDB entries]
  
  
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter (GO:1904741)
  [1 PDB entries]
  
  
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (GO:1900524)
• positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter (GO:0035948)
  [98 PDB entries]
  
  
• positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900375)
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (GO:0035951)
• positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
  [6 PDB entries]
  
  
• positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900413)
  [2 PDB entries]
  
  
• positive regulation of posterior gap gene transcription (GO:0007360)
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter (GO:1900461)
• positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900418)
• positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060963)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
• positive regulation of SREBP signaling pathway (GO:2000640)
  [3 PDB entries]
  
  
• positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035957)
• positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter (GO:1900478)
• positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• positive regulation of terminal gap gene transcription (GO:0007363)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900622)
• positive regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903757)
• positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
  [48 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
  [1 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to stress (GO:0036003)
  [22 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus (GO:1901522)
  [119 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (GO:1901244)
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (GO:1902097)
• positive regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901228)
  [3 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation (GO:1904081)
• positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process (GO:2000763)
• positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000721)
• positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion (GO:1902901)
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• positive regulation of transcription of Notch receptor target (GO:0007221)
  [40 PDB entries]
  
  
• positive regulation of transcription via serum response element binding (GO:0010735)
  [13 PDB entries]
  
  
• regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072366)
  [18 PDB entries]
  
  
• regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072363)
  [35 PDB entries]
  
  
• regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
  [23 PDB entries]
  
  
• regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter (GO:0097301)
• regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1904488)
• SREBP signaling pathway (GO:0032933)
  [10 PDB entries]
  
  
• transcriptional activation by promoter-enhancer looping (GO:0071733)
  [13 PDB entries]
  
  
• transcriptional activation by promoter-terminator looping (GO:0090203)
• pri-miRNA transcription by RNA polymerase II (GO:0061614)
  [20 PDB entries]
  
  
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• regulation of pri-miRNA transcription by RNA polymerase II (GO:1902893)
• promoter clearance from RNA polymerase II promoter (GO:0001111)
  [12 PDB entries]
  
  
• regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter (GO:0100024)
  • negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter (GO:0100047)
  • positive regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter (GO:0100015)
  • regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter (GO:0100034)
• regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter (GO:0100038)
  • regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter (GO:1900427)
• regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter (GO:0100028)
  • negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter (GO:0100066)
• regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter (GO:0100070)
  • regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:2000531)
    [3 PDB entries]
    
    
• regulation of fungal-type cell wall biogenesis by transcription from RNA polymerase II promoter (GO:0100033)
  • regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter (GO:1900415)
• regulation of meiotic nuclear division by transcription from RNA polymerase II promoter (GO:0100023)
  • positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter (GO:0100051)
• regulation of phenotypic switching by transcription from RNA polymerase II promoter (GO:0100057)
  [5 PDB entries]
  
  
• negative regulation of phenotypic switching by transcription from RNA polymerase II promoter (GO:0100059)
• positive regulation of phenotypic switching by transcription from RNA polymerase II promoter (GO:0100058)
• regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (GO:1900545)
• regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100039)
  • regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900448)
• regulation of thiamine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100016)
  • regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:1900382)
• regulation of transcription by RNA polymerase II (GO:0006357)
  [1919 PDB entries]
  
  
• BMP signaling pathway (GO:0030509)
  [183 PDB entries]
  
  
• carbon catabolite regulation of transcription from RNA polymerase II promoter (GO:0000429)
• dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940)
  [34 PDB entries]
  
  
• negative regulation of leucine import by regulation of transcription from RNA polymerase II promoter (GO:1902574)
• negative regulation of transcription by RNA polymerase II (GO:0000122)
  [4571 PDB entries]
  
  
• carbon catabolite repression of transcription from RNA polymerase II promoter (GO:0000437)
• negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter (GO:1900387)
• negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA polymerase II promoter (GO:1900464)
• negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (GO:1900463)
• negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (GO:0061427)
• negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by negative regulation of transcription from RNA polymerase II promoter (GO:1902352)
• negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter (GO:1900477)
• negative regulation of induction of conjugation with cellular fusion by negative regulation of transcription from RNA polymerase II promoter (GO:1902625)
  [1 PDB entries]
  
  
• negative regulation of inositol biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900471)
• negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter (GO:1900460)
• negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (GO:1900474)
• negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (GO:1904490)
• negative regulation of neuron apoptotic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904089)
• negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter (GO:0035952)
• negative regulation of phosphatidylcholine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900473)
• negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (GO:1900526)
• negative regulation of pri-miRNA transcription by RNA polymerase II (GO:1902894)
  [65 PDB entries]
  
  
• negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (GO:1900462)
• negative regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0010688)
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903758)
  [4 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046020)
  [1 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061398)
• negative regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034396)
• negative regulation of transcription from RNA polymerase II promoter in response to stress (GO:0097201)
• negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (GO:0010768)
  [14 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901227)
  [3 PDB entries]
  
  
• negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010674)
• negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000820)
  [1 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (GO:0035949)
• regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072365)
  [14 PDB entries]
  
  
• regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter (GO:0072362)
  [6 PDB entries]
  
  
• regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (GO:0072368)
  [7 PDB entries]
  
  
• regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (GO:1904489)
• regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• transfer RNA gene-mediated silencing (GO:0061587)
  [26 PDB entries]
  
  
• nitrogen catabolite regulation of transcription from RNA polymerase II promoter (GO:0001079)
• phosphorylation of RNA polymerase II C-terminal domain (GO:0070816)
  [26 PDB entries]
  
  
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter (GO:1900374)
• positive regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (GO:1900546)
• positive regulation of transcription by RNA polymerase II (GO:0045944)
  [6300 PDB entries]
  
  
• carbon catabolite activation of transcription from RNA polymerase II promoter (GO:0000436)
  [8 PDB entries]
  
  
• positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900422)
• positive regulation of central gap gene transcription (GO:0007357)
• positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter (GO:1900404)
• positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035961)
  [3 PDB entries]
  
  
• positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
  [6 PDB entries]
  
  
• positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter (GO:1904741)
  [1 PDB entries]
  
  
• positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (GO:1900524)
• positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter (GO:0035948)
  [98 PDB entries]
  
  
• positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900375)
• positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter (GO:0036095)
• positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (GO:1900423)
• positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (GO:0035951)
• positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
  [6 PDB entries]
  
  
• positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900413)
  [2 PDB entries]
  
  
• positive regulation of posterior gap gene transcription (GO:0007360)
• positive regulation of pri-miRNA transcription by RNA polymerase II (GO:1902895)
  [64 PDB entries]
  
  
• positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter (GO:1900461)
• positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900418)
• positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (GO:1904001)
• positive regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060963)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
• positive regulation of SREBP signaling pathway (GO:2000640)
  [3 PDB entries]
  
  
• positive regulation of starch catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0035957)
• positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter (GO:1900478)
• positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• positive regulation of terminal gap gene transcription (GO:0007363)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900622)
• positive regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903757)
• positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
  [48 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
  [1 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter in response to stress (GO:0036003)
  [22 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus (GO:1901522)
  [119 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (GO:1901244)
• positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (GO:1902097)
• positive regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901228)
  [3 PDB entries]
  
  
• positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010673)
• positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation (GO:1904081)
• positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process (GO:2000763)
• positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (GO:2000721)
• positive regulation of transcription from RNA polymerase II promoter involved in stress response to cadmium ion (GO:1902901)
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
  [1 PDB entries]
  
  
• positive regulation of transcription of Notch receptor target (GO:0007221)
  [40 PDB entries]
  
  
• positive regulation of transcription via serum response element binding (GO:0010735)
  [13 PDB entries]
  
  
• regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072366)
  [18 PDB entries]
  
  
• regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter (GO:0072363)
  [35 PDB entries]
  
  
• regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
  [23 PDB entries]
  
  
• regulation of potassium ion concentration by positive regulation of transcription from RNA polymerase II promoter (GO:0097301)
• regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:1904488)
• SREBP signaling pathway (GO:0032933)
  [10 PDB entries]
  
  
• transcriptional activation by promoter-enhancer looping (GO:0071733)
  [13 PDB entries]
  
  
• transcriptional activation by promoter-terminator looping (GO:0090203)
• regulation of androgen receptor activity (GO:2000823)
• regulation of BMP signaling pathway (GO:0030510)
  [79 PDB entries]
  
  
• regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter (GO:1900402)
• regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter (GO:0072364)
• regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter (GO:1900427)
• regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter (GO:1900406)
  [1 PDB entries]
  
  
• regulation of ergosterol biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:0035960)
• regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter (GO:1900415)
• regulation of glucose import by regulation of transcription from RNA polymerase II promoter (GO:1900389)
• regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter (GO:1900393)
• regulation of lipid transport by regulation of transcription from RNA polymerase II promoter (GO:0072367)
• regulation of mating-type specific transcription from RNA polymerase II promoter (GO:0001196)
• regulation of nodal signaling pathway involved in determination of left/right asymmetry (GO:1900145)
• regulation of oligopeptide transport by regulation of transcription from RNA polymerase II promoter (GO:0035950)
• regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (GO:1900545)
• regulation of phosphorylation of RNA polymerase II C-terminal domain (GO:1901407)
  [211 PDB entries]
  
  
• regulation of pri-miRNA transcription by RNA polymerase II (GO:1902893)
• regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (GO:1900448)
• regulation of replicative cell aging by regulation of transcription from RNA polymerase II promoter in response to caloric restriction (GO:0061434)
• regulation of ribosomal protein gene transcription by RNA polymerase II (GO:0060962)
• regulation of snRNA transcription by RNA polymerase II (GO:1905380)
• regulation of SREBP signaling pathway (GO:2000638)
• regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901580)
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter (GO:1900382)
• regulation of thyroid hormone receptor activity (GO:1904167)
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter by calcium-mediated signaling (GO:1900621)
• regulation of transcription from RNA polymerase II promoter by histone modification (GO:1903756)
• regulation of transcription from RNA polymerase II promoter by pheromones (GO:0046019)
• regulation of transcription from RNA polymerase II promoter in response to copper ion (GO:0061396)
• regulation of transcription from RNA polymerase II promoter in response to iron (GO:0034395)
  [52 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter in response to methionine (GO:0061432)
• regulation of transcription from RNA polymerase II promoter in response to stress (GO:0043618)
  [33 PDB entries]
  
  
• regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry (GO:1900094)
• regulation of transcription from RNA polymerase II promoter involved in heart development (GO:1901213)
• regulation of transcription from RNA polymerase II promoter involved in kidney development (GO:0060994)
• regulation of transcription from RNA polymerase II promoter involved in lung bud formation (GO:0060500)
• regulation of transcription from RNA polymerase II promoter involved in mammary gland formation (GO:0060597)
• regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (GO:0010672)
• regulation of transcription from RNA polymerase II promoter involved in somitogenesis (GO:0090236)
• regulation of transcription from RNA polymerase II promoter involved in spermatogenesis (GO:1902064)
• regulation of transcription from RNA polymerase II promoter involved in spinal cord anterior-posterior patterning (GO:0021909)
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• regulation of transcription involved in anterior neural plate formation (GO:0090019)
• regulation of transcription involved in anterior/posterior axis specification (GO:0044324)
  [1 PDB entries]
  
  
• regulation of transcription involved in cell fate commitment (GO:0060850)
  [229 PDB entries]
  
  
• regulation of transcription involved in posterior neural plate formation (GO:0090020)
• regulation of transport by transcription from RNA polymerase II promoter (GO:0100020)
  • negative regulation of leucine import by transcription from RNA polymerase II promoter (GO:0100065)
  • positive regulation of sodium ion transport by transcription from RNA polymerase II promoter (GO:0100003)
  • positive regulation of sulfite transport by transcription from RNA polymerase II promoter (GO:0100006)
  • regulation of glucose import by transcription from RNA polymerase II promoter (GO:0100018)
  • regulation of iron ion transport by transcription from RNA polymerase II promoter (GO:0100021)
  • regulation of transport by negative regulation of transcription from RNA polymerase II promoter (GO:1900392)
• snoRNA transcription by RNA polymerase II (GO:0001015)
  [2 PDB entries]
  
  
• snRNA transcription by RNA polymerase II (GO:0042795)
  [133 PDB entries]
  
  
• negative regulation of snRNA transcription by RNA polymerase II (GO:1905381)
• positive regulation of snRNA transcription by RNA polymerase II (GO:1905382)
• regulation of snRNA transcription by RNA polymerase II (GO:1905380)
• telomeric repeat-containing RNA transcription by RNA polymerase II (GO:0097394)
  [5 PDB entries]
  
  
• negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
  [9 PDB entries]
  
  
• positive regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901582)
  [8 PDB entries]
  
  
• regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901580)
• termination of RNA polymerase II transcription (GO:0006369)
  [259 PDB entries]
  
  
• negative regulation of termination of RNA polymerase II transcription (GO:0120191)
• positive regulation of termination of RNA polymerase II transcription (GO:1904595)
  [1 PDB entries]
  
  
• regulation of termination of RNA polymerase II transcription (GO:1904594)
• termination of RNA polymerase II transcription, exosome-dependent (GO:0030847)
  [18 PDB entries]
  
  
• termination of RNA polymerase II transcription, poly(A)-coupled (GO:0030846)
  [4 PDB entries]
  
  
• transcription elongation from RNA polymerase II promoter (GO:0006368)
  [325 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (GO:0001193)
  [130 PDB entries]
  
  
• negative regulation of transcription elongation from RNA polymerase II promoter (GO:0034244)
  [58 PDB entries]
  
  
• positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
  [375 PDB entries]
  
  
• regulation of transcription elongation from RNA polymerase II promoter (GO:0034243)
  [16 PDB entries]
  
  
• transcription initiation from RNA polymerase II promoter (GO:0006367)
  [1554 PDB entries]
  
  
• negative regulation of transcription initiation from RNA polymerase II promoter (GO:0060633)
  [4 PDB entries]
  
  
• positive regulation of transcription initiation from RNA polymerase II promoter (GO:0060261)
  [189 PDB entries]
  
  
• regulation of transcription initiation from RNA polymerase II promoter (GO:0060260)
• RNA polymerase II preinitiation complex assembly (GO:0051123)
  [80 PDB entries]
  
  
• transcriptional open complex formation at RNA polymerase II promoter (GO:0001113)
  [16 PDB entries]
  
  
• transcriptional start site selection at RNA polymerase II promoter (GO:0001174)
  [16 PDB entries]
  
  
• transcription by RNA polymerase III (GO:0006383)
  [188 PDB entries]
  
  
• 5S class rRNA transcription by RNA polymerase III (GO:0042791)
  [5 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase III (GO:0016480)
  [13 PDB entries]
  
  
• negative regulation of RNA polymerase III activity (GO:1903623)
• positive regulation of transcription by RNA polymerase III (GO:0045945)
  [146 PDB entries]
  
  
• promoter clearance from RNA polymerase III promoter (GO:0001110)
• regulation of transcription by RNA polymerase III (GO:0006359)
  [60 PDB entries]
  
  
• negative regulation of transcription by RNA polymerase III (GO:0016480)
  [13 PDB entries]
  
  
• negative regulation of RNA polymerase III activity (GO:1903623)
• positive regulation of transcription by RNA polymerase III (GO:0045945)
  [146 PDB entries]
  
  
• regulation of RNA polymerase III activity (GO:1903622)
• snoRNA transcription by RNA polymerase III (GO:0001014)
• snRNA transcription by RNA polymerase III (GO:0042796)
  [1 PDB entries]
  
  
• termination of RNA polymerase III transcription (GO:0006386)
  [140 PDB entries]
  
  
• transcription elongation from RNA polymerase III promoter (GO:0006385)
  [151 PDB entries]
  
  
• maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter (GO:0001195)
  [3 PDB entries]
  
  
• transcription initiation from RNA polymerase III promoter (GO:0006384)
  [8 PDB entries]
  
  
• RNA polymerase III preinitiation complex assembly (GO:0070898)
  [21 PDB entries]
  
  
• transcriptional start site selection at RNA polymerase III promoter (GO:0001175)
• tRNA transcription by RNA polymerase III (GO:0042797)
  [142 PDB entries]
  
  
• transcription by RNA polymerase IV (GO:0001059)
• transcription by RNA polymerase V (GO:0001060)
  • negative regulation of transcription by RNA polymerase V (GO:1904280)
  • positive regulation of transcription by RNA polymerase V (GO:1904281)
  • regulation of transcription by RNA polymerase V (GO:1904279)
    • negative regulation of transcription by RNA polymerase V (GO:1904280)
    • positive regulation of transcription by RNA polymerase V (GO:1904281)

Click on the GO accession number to get a tree view of the GO hierarchy without information on PDB entries. In this case your query level and all levels of higher hierarchy up to the root level Gene_Ontology (GO:0003673) are displayed.

If you enter the GO tree somewhere and if you want to get a view of the whole tree first click on the GO name. This yields the low-hierarchy part. Then click on the GO accession number of the lowest hierarchical level. This gives a view of the complete tree. Note, that certain GO terms belong to more than one path.

GO2PDB@JenaLib
Tue Jul 9 10:48:17 2019