load pdb inline background [255,255,255] color cpk select ligand cpk select not ligand wireframe 40 select selected and not bonded cpk 40 select ( protein and carbon and *.CA ) or ( nucleic and *.C5* ) label "%n %r" color label black select not ( HYDROGEN or CARBON or NITROGEN or OXYGEN or PHOSPHORUS or SULPHUR ) label "%e" select carbon color green select phosphorus color magenta select not bonded cpk select all show info exit LINK O3' 5CM A 1 P DG A 2 1555 1555 1.64 LINK O3' 5CM A 5 P DG A 6 1555 1555 1.62 LINK O3' 5CM B 7 P DG B 8 1555 1555 1.52 LINK O3' 5CM B 11 P DG B 12 1555 1555 1.60 HETATM 1 N1 5CM A 1 15.300 17.856 18.978 1.00 5.29 N HETATM 2 C2 5CM A 1 13.936 17.644 18.769 1.00 5.46 C HETATM 3 N3 5CM A 1 13.198 18.750 18.673 1.00 6.23 N HETATM 4 C4 5CM A 1 13.771 20.037 18.734 1.00 5.07 C HETATM 5 C5 5CM A 1 15.159 20.247 19.018 1.00 5.64 C HETATM 6 C5A 5CM A 1 15.684 21.633 19.149 1.00 5.20 C HETATM 7 C6 5CM A 1 15.819 19.097 19.141 1.00 6.05 C HETATM 8 O2 5CM A 1 13.363 16.538 18.636 1.00 5.70 O HETATM 9 N4 5CM A 1 12.922 21.133 18.620 1.00 6.31 N HETATM 10 C1' 5CM A 1 16.101 16.621 19.183 1.00 6.78 C HETATM 11 C2' 5CM A 1 16.529 16.137 17.779 1.00 7.98 C HETATM 12 C3' 5CM A 1 17.754 15.266 18.331 1.00 9.97 C HETATM 13 C4' 5CM A 1 18.390 15.972 19.485 1.00 8.88 C HETATM 14 O4' 5CM A 1 17.194 16.845 19.942 1.00 8.12 O HETATM 15 O3' 5CM A 1 17.274 14.012 18.713 1.00 12.29 O HETATM 16 C5' 5CM A 1 19.585 16.850 19.270 1.00 9.20 C HETATM 17 O5' 5CM A 1 19.304 17.969 18.403 1.00 8.45 O HETATM 80 N1 5CM A 5 14.505 11.809 33.864 1.00 2.00 N HETATM 81 C2 5CM A 5 14.965 13.082 33.731 1.00 2.00 C HETATM 82 N3 5CM A 5 16.327 13.182 33.688 1.00 2.00 N HETATM 83 C4 5CM A 5 17.172 12.086 33.621 1.00 2.00 C HETATM 84 C5 5CM A 5 16.574 10.814 33.801 1.00 2.00 C HETATM 85 C5A 5CM A 5 17.475 9.572 33.838 1.00 2.59 C HETATM 86 C6 5CM A 5 15.267 10.686 33.922 1.00 2.00 C HETATM 87 O2 5CM A 5 14.288 14.047 33.758 1.00 3.83 O HETATM 88 N4 5CM A 5 18.496 12.353 33.516 1.00 2.00 N HETATM 89 C1' 5CM A 5 12.989 11.647 33.987 1.00 3.54 C HETATM 90 C2' 5CM A 5 12.289 11.763 32.616 1.00 4.89 C HETATM 91 C3' 5CM A 5 11.064 11.082 33.045 1.00 6.93 C HETATM 92 C4' 5CM A 5 11.202 10.119 34.266 1.00 6.20 C HETATM 93 O4' 5CM A 5 12.579 10.434 34.530 1.00 4.24 O HETATM 94 O3' 5CM A 5 10.193 12.182 33.467 1.00 10.54 O HETATM 95 C5' 5CM A 5 11.164 8.611 34.049 1.00 7.21 C HETATM 96 O5' 5CM A 5 12.032 8.580 32.795 1.00 10.54 O HETATM 97 P 5CM A 5 12.146 7.060 32.186 1.00 12.97 P HETATM 98 OP1 5CM A 5 13.264 6.595 32.953 1.00 16.02 O HETATM 99 OP2 5CM A 5 10.829 6.401 31.881 1.00 14.50 O HETATM 123 N1 5CM B 7 16.788 14.829 36.888 1.00 3.58 N HETATM 124 C2 5CM B 7 15.632 14.033 37.088 1.00 4.76 C HETATM 125 N3 5CM B 7 15.895 12.673 37.149 1.00 4.11 N HETATM 126 C4 5CM B 7 17.146 12.152 37.098 1.00 4.52 C HETATM 127 C5 5CM B 7 18.282 12.988 37.001 1.00 4.28 C HETATM 128 C5A 5CM B 7 19.652 12.415 36.818 1.00 3.85 C HETATM 129 C6 5CM B 7 18.046 14.310 36.962 1.00 4.53 C HETATM 130 O2 5CM B 7 14.480 14.433 37.196 1.00 6.13 O HETATM 131 N4 5CM B 7 17.282 10.821 37.193 1.00 5.62 N HETATM 132 C1' 5CM B 7 16.390 16.313 36.885 1.00 5.51 C HETATM 133 C2' 5CM B 7 16.440 16.920 38.215 1.00 3.40 C HETATM 134 C3' 5CM B 7 16.760 18.456 37.828 1.00 5.75 C HETATM 135 C4' 5CM B 7 17.705 18.399 36.657 1.00 6.43 C HETATM 136 O4' 5CM B 7 17.480 16.982 36.301 1.00 6.57 O HETATM 137 O3' 5CM B 7 15.544 19.068 37.582 1.00 6.05 O HETATM 138 C5' 5CM B 7 19.206 18.734 36.817 1.00 6.80 C HETATM 139 O5' 5CM B 7 19.757 17.978 37.909 1.00 8.42 O HETATM 202 N1 5CM B 11 11.649 18.129 21.965 1.00 7.33 N HETATM 203 C2 5CM B 11 12.844 17.505 22.314 1.00 5.21 C HETATM 204 N3 5CM B 11 13.887 18.410 22.384 1.00 6.44 N HETATM 205 C4 5CM B 11 13.820 19.790 22.267 1.00 5.40 C HETATM 206 C5 5CM B 11 12.495 20.294 22.086 1.00 5.57 C HETATM 207 C5A 5CM B 11 12.199 21.740 22.074 1.00 3.43 C HETATM 208 C6 5CM B 11 11.473 19.499 21.874 1.00 5.79 C HETATM 209 O2 5CM B 11 13.095 16.323 22.222 1.00 4.89 O HETATM 210 N4 5CM B 11 14.974 20.488 22.482 1.00 5.52 N HETATM 211 C1' 5CM B 11 10.582 17.132 21.852 1.00 6.13 C HETATM 212 C2' 5CM B 11 9.911 16.773 23.267 1.00 8.53 C HETATM 213 C3' 5CM B 11 8.610 16.226 22.828 1.00 10.22 C HETATM 214 C4' 5CM B 11 8.258 17.056 21.582 1.00 9.59 C HETATM 215 O4' 5CM B 11 9.538 17.707 21.247 1.00 9.90 O HETATM 216 O3' 5CM B 11 8.703 14.872 22.440 1.00 11.83 O HETATM 217 C5' 5CM B 11 7.329 18.173 21.833 1.00 12.02 C HETATM 218 O5' 5CM B 11 7.641 19.093 22.736 1.00 11.79 O HETATM 219 P 5CM B 11 6.672 19.692 23.803 1.00 12.65 P HETATM 220 OP1 5CM B 11 5.542 20.532 23.140 1.00 12.87 O HETATM 221 OP2 5CM B 11 6.280 18.728 24.864 1.00 12.98 O