ID code: 2PUF, PDR044 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 20 Apr 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) AA 700 0.016 1 : 2) CA 701 0.011 1 : 3) GA 702 0.022 1 : 4) CA 703 0.011 1 : 5) AA 704 0.013 1 : 6) AA 705 0.013 1 : 7) AA 706 0.014 1 : 8) CA 707 0.010 1 : 9) GA 708 0.018 1 : 10) TA 709 0.021 1 : 11) TA 710 0.022 1 : 12) TA 711 0.017 1 : 13) GA 712 0.019 1 : 14) CA 713 0.013 1 : 15) GA 714 0.020 1 : 16) TA 715 0.019 2 : 1) TB 715 0.019 2 : 2) GB 714 0.020 2 : 3) CB 713 0.013 2 : 4) GB 712 0.019 2 : 5) TB 711 0.017 2 : 6) TB 710 0.022 2 : 7) TB 709 0.021 2 : 8) GB 708 0.018 2 : 9) CB 707 0.010 2 : 10) AB 706 0.014 2 : 11) AB 705 0.013 2 : 12) AB 704 0.013 2 : 13) CB 703 0.011 2 : 14) GB 702 0.022 2 : 15) CB 701 0.011 2 : 16) AB 700 0.016 Strand= 2 Nucleo= 32 Atoms = 650 Units = 32 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 16 levels ... Strand 1 has 16 bases (5'-3'): ACGCAAACGTTTGCGT Strand 2 has 16 bases (3'-5'): TGCGTTTGCAAACGCA FIRST SUM= 134.972 CPTS: 18.164 19.310 35.692 61.806 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 64 STEP 1 SUM= 134.972 DEL= 0.000E+00 STEP 2 SUM= 105.136 DEL= -0.298E+02 STEP 3 SUM= 137.500 DEL= 0.324E+02 STEP 4 SUM= 95.459 DEL= -0.420E+02 STEP 5 SUM= 89.548 DEL= -0.591E+01 STEP 6 SUM= 81.039 DEL= -0.851E+01 STEP 7 SUM= 71.472 DEL= -0.957E+01 STEP 8 SUM= 73.530 DEL= 0.206E+01 STEP 9 SUM= 67.149 DEL= -0.638E+01 STEP 10 SUM= 63.279 DEL= -0.387E+01 STEP 11 SUM= 62.828 DEL= -0.451E+00 STEP 12 SUM= 61.223 DEL= -0.160E+01 STEP 13 SUM= 58.933 DEL= -0.229E+01 STEP 14 SUM= 58.926 DEL= -0.754E-02 STEP 15 SUM= 57.786 DEL= -0.114E+01 STEP 16 SUM= 56.358 DEL= -0.143E+01 STEP 17 SUM= 56.352 DEL= -0.506E-02 STEP 18 SUM= 55.642 DEL= -0.711E+00 STEP 19 SUM= 54.768 DEL= -0.873E+00 STEP 20 SUM= 53.787 DEL= -0.982E+00 STEP 21 SUM= 53.670 DEL= -0.117E+00 STEP 22 SUM= 53.265 DEL= -0.405E+00 STEP 23 SUM= 52.695 DEL= -0.570E+00 STEP 24 SUM= 54.966 DEL= 0.227E+01 STEP 25 SUM= 52.600 DEL= -0.237E+01 STEP 26 SUM= 52.479 DEL= -0.121E+00 STEP 27 SUM= 52.260 DEL= -0.219E+00 STEP 28 SUM= 51.843 DEL= -0.417E+00 STEP 29 SUM= 53.304 DEL= 0.146E+01 STEP 30 SUM= 51.695 DEL= -0.161E+01 STEP 31 SUM= 51.703 DEL= 0.766E-02 STEP 32 SUM= 51.623 DEL= -0.798E-01 STEP 33 SUM= 51.540 DEL= -0.831E-01 STEP 34 SUM= 51.421 DEL= -0.119E+00 STEP 35 SUM= 51.437 DEL= 0.164E-01 STEP 36 SUM= 51.365 DEL= -0.722E-01 STEP 37 SUM= 51.309 DEL= -0.560E-01 STEP 38 SUM= 51.272 DEL= -0.370E-01 STEP 39 SUM= 51.237 DEL= -0.350E-01 STEP 40 SUM= 51.197 DEL= -0.398E-01 STEP 41 SUM= 51.173 DEL= -0.234E-01 STEP 42 SUM= 51.147 DEL= -0.264E-01 STEP 43 SUM= 51.117 DEL= -0.302E-01 STEP 44 SUM= 51.126 DEL= 0.921E-02 STEP 45 SUM= 51.104 DEL= -0.223E-01 STEP 46 SUM= 51.088 DEL= -0.155E-01 STEP 47 SUM= 51.061 DEL= -0.268E-01 STEP 48 SUM= 51.032 DEL= -0.297E-01 STEP 49 SUM= 50.982 DEL= -0.497E-01 STEP 50 SUM= 50.948 DEL= -0.338E-01 STEP 51 SUM= 50.937 DEL= -0.107E-01 STEP 52 SUM= 50.932 DEL= -0.574E-02 STEP 53 SUM= 50.929 DEL= -0.253E-02 STEP 54 SUM= 50.929 DEL= -0.486E-03 STEP 55 SUM= 50.928 DEL= -0.339E-03 STEP 56 SUM= 50.928 DEL= -0.264E-03 STEP 57 SUM= 50.928 DEL= -0.270E-03 STEP 58 SUM= 50.928 DEL= -0.431E-04 STEP 59 SUM= 50.928 DEL= -0.703E-05 STEP 60 SUM= 50.928 DEL= -0.119E-05 STEP 61 SUM= 50.928 DEL= -0.314E-06 STEP 62 SUM= 50.928 DEL= -0.786E-07 STEP 63 SUM= 50.928 DEL= -0.159E-07 STEP 64 SUM= 50.928 DEL= -0.671E-08 STEP 65 SUM= 50.928 DEL= -0.262E-08 STEP 66 SUM= 50.928 DEL= -0.200E-08 STEP 67 SUM= 50.928 DEL= -0.180E-08 STEP 68 SUM= 50.928 DEL= -0.136E-08 STEP 69 SUM= 50.928 DEL= -0.386E-09 STEP 70 SUM= 50.928 DEL= -0.174E-09 STEP 71 SUM= 50.928 DEL= -0.813E-10 STEP 72 SUM= 50.928 DEL= -0.233E-10 STEP 73 SUM= 50.928 DEL= -0.760E-11 STEP 74 SUM= 50.928 DEL= -0.380E-11 STEP 75 SUM= 50.928 DEL= -0.340E-11 STEP 76 SUM= 50.928 DEL= -0.277E-11 STEP 77 SUM= 50.928 DEL= -0.291E-12 STEP 78 SUM= 50.928 DEL= -0.213E-13 STEP 79 SUM= 50.928 DEL= 0.000E+00 FINAL SUM= 50.928 CPTS: 15.902 18.631 8.083 8.312 GRA=-0.23E-07 0.42E-08 0.55E-08-0.36E-08-0.31E-07-0.43E-08-0.10E-07 0.13E-07 GRA=-0.58E-08 0.17E-07-0.52E-09-0.78E-08-0.16E-07 0.32E-08-0.52E-09 0.37E-08 GRA= 0.10E-08 0.23E-07-0.11E-08 0.36E-08 0.15E-08 0.11E-07-0.20E-08 0.36E-08 GRA= 0.15E-07 0.14E-07 0.65E-08 0.92E-09-0.87E-08 0.22E-07-0.33E-08 0.15E-08 GRA= 0.15E-07 0.20E-08 0.19E-08-0.40E-08 0.84E-08-0.42E-08 0.11E-07-0.98E-09 GRA= 0.20E-07 0.97E-08-0.13E-07 0.11E-08 0.12E-07-0.85E-08 0.59E-08-0.16E-08 GRA= 0.21E-07-0.12E-07 0.43E-08-0.35E-08 0.16E-07-0.13E-07 0.51E-09 0.87E-08 GRA=-0.40E-09-0.20E-07-0.33E-08-0.56E-08 0.50E-08-0.18E-07-0.76E-09-0.17E-08 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.321 -0.745 -0.585 P: 4.913 20.358 13.681 D: 2.373 2) U: 0.421 -0.718 -0.554 P: 6.118 18.360 11.568 D: 1.474 3) U: 0.372 -0.756 -0.539 P: 7.120 15.567 9.560 D: 3.167 4) U: 0.411 -0.775 -0.480 P: 8.294 12.995 7.505 D: 4.875 5) U: 0.369 -0.801 -0.471 P: 9.619 9.743 6.733 D: 0.433 6) U: 0.348 -0.796 -0.495 P: 10.922 7.174 5.104 D: 1.397 7) U: 0.302 -0.767 -0.566 P: 12.155 4.705 3.766 D: 3.890 8) U: 0.290 -0.746 -0.599 P: 13.593 2.365 2.122 D: 15.709 9) U: -0.290 -0.746 -0.599 P: 13.593 -2.365 -2.122 D: 3.890 10) U: -0.302 -0.767 -0.566 P: 12.155 -4.705 -3.766 D: 1.397 11) U: -0.348 -0.796 -0.495 P: 10.922 -7.174 -5.104 D: 0.433 12) U: -0.369 -0.801 -0.471 P: 9.619 -9.743 -6.733 D: 4.875 13) U: -0.411 -0.775 -0.480 P: 8.294 -12.995 -7.505 D: 3.167 14) U: -0.372 -0.756 -0.539 P: 7.120 -15.567 -9.560 D: 1.474 15) U: -0.421 -0.718 -0.554 P: 6.118 -18.360 -11.568 D: 2.373 16) U: -0.321 -0.745 -0.585 P: 4.913 -20.358 -13.681 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) AA 700 -1.21 0.66 -10.43 3.98 2 0 2) CA 701 -0.88 0.54 -7.31 7.07 3 -14 3) GA 702 -0.74 0.31 -0.03 4.50 1 13 4) CA 703 -1.71 -0.18 6.31 -5.15 3 -15 5) AA 704 -0.47 0.40 7.90 -6.17 2 26 6) AA 705 -0.52 0.48 7.54 -9.91 2 20 7) AA 706 -0.33 0.09 16.19 -17.84 2 23 8) CA 707 -1.15 0.15 29.09 -16.10 3 -14 9) GA 708 -0.71 0.24 -1.14 4.48 1 14 10) TA 709 -0.90 -0.29 -8.62 -7.20 4 -23 11) TA 710 -0.75 -0.36 1.09 -3.17 4 -20 12) TA 711 -0.28 -0.42 4.55 1.63 4 -26 13) GA 712 -0.46 0.08 7.09 -10.84 1 15 14) CA 713 -1.27 -0.46 -0.96 -7.20 3 -13 15) GA 714 -0.48 -0.57 -5.17 -10.18 1 14 16) TA 715 -0.94 -0.85 6.32 -0.66 4 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) TB 715 -0.94 -0.85 6.32 -0.66 4 0 2) GB 714 -0.48 -0.57 -5.17 -10.18 1 14 3) CB 713 -1.27 -0.46 -0.96 -7.20 3 -13 4) GB 712 -0.46 0.08 7.09 -10.84 1 15 5) TB 711 -0.28 -0.42 4.55 1.63 4 -26 6) TB 710 -0.75 -0.36 1.09 -3.17 4 -20 7) TB 709 -0.90 -0.29 -8.62 -7.20 4 -23 8) GB 708 -0.71 0.24 -1.14 4.48 1 14 9) CB 707 -1.15 0.15 29.09 -16.10 3 -14 10) AB 706 -0.33 0.09 16.19 -17.84 2 23 11) AB 705 -0.52 0.48 7.54 -9.91 2 20 12) AB 704 -0.47 0.40 7.90 -6.17 2 26 13) CB 703 -1.71 -0.18 6.31 -5.15 3 -15 14) GB 702 -0.74 0.31 -0.03 4.50 1 13 15) CB 701 -0.88 0.54 -7.31 7.07 3 -14 16) AB 700 -1.21 0.66 -10.43 3.98 2 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) A700-T715 -1.08 0.75 -2.06 2.32 2 0 2) C701-G714 -0.68 0.55 -6.24 8.62 3 -14 3) G702-C713 -1.00 0.38 -0.49 5.85 1 13 4) C703-G712 -1.09 -0.13 6.70 2.85 3 -15 5) A704-T711 -0.38 0.41 6.23 -3.90 2 26 6) A705-T710 -0.63 0.42 4.31 -3.37 2 20 7) A706-T709 -0.62 0.19 3.78 -5.32 2 23 8) C707-G708 -0.93 -0.04 13.98 -10.29 3 -14 9) G708-C707 -0.93 0.04 13.98 10.29 1 14 10) T709-A706 -0.62 -0.19 3.78 5.32 4 -23 11) T710-A705 -0.63 -0.42 4.31 3.37 4 -20 12) T711-A704 -0.38 -0.41 6.23 3.90 4 -26 13) G712-C703 -1.09 0.13 6.70 -2.85 1 15 14) C713-G702 -1.00 -0.38 -0.49 -5.85 3 -13 15) G714-C701 -0.68 -0.55 -6.24 -8.62 1 14 16) T715-A700 -1.08 -0.75 -2.06 -2.32 4 0 Average: -0.80 -0.00 3.28 -0.00 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) A700-T715 -0.27 -0.19 -0.60 -16.76 3.32 -2.28 2 0 2) C701-G714 -0.40 -0.03 0.61 -2.14 -3.11 -0.39 3 -14 3) G702-C713 0.53 -0.15 0.42 0.92 -2.71 -1.89 1 13 4) C703-G712 -1.24 -0.10 -0.25 -0.79 -15.99 2.22 3 -15 5) A704-T711 -0.19 -0.02 0.30 3.35 -4.54 9.09 2 26 6) A705-T710 0.23 0.12 0.40 6.45 -13.07 8.56 2 20 7) A706-T709 0.57 -0.20 0.50 24.81 -25.04 4.28 2 23 8) C707-G708 -0.43 0.39 -0.86 30.22 -11.63 1.76 3 -14 9) G708-C707 0.43 0.39 -0.86 -30.22 -11.63 1.76 1 14 10) T709-A706 -0.57 -0.20 0.50 -24.81 -25.04 4.28 4 -23 11) T710-A705 -0.23 0.12 0.40 -6.45 -13.07 8.56 4 -20 12) T711-A704 0.19 -0.02 0.30 -3.35 -4.54 9.09 4 -26 13) G712-C703 1.24 -0.10 -0.25 0.79 -15.99 2.22 1 15 14) C713-G702 -0.53 -0.15 0.42 -0.92 -2.71 -1.89 3 -13 15) G714-C701 0.40 -0.03 0.61 2.14 -3.11 -0.39 1 14 16) T715-A700 0.27 -0.19 -0.60 16.76 3.32 -2.28 4 0 Average: 0.00 -0.02 0.07 0.00 -9.09 2.67 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A700/C701 0.70 -0.37 3.73 -1.87 6.70 23.72 -6 3) C701/G702 -0.29 -0.33 3.46 6.38 -6.10 36.47 8 4) G702/C703 -1.23 -0.72 3.14 3.59 -6.53 27.76 5 5) C703/A704 1.97 1.28 3.72 -1.14 -1.84 44.67 9 6) A704/A705 -0.10 -0.05 3.36 -1.59 -5.12 36.23 4 7) A705/A706 0.28 -0.75 3.10 4.00 -10.08 35.01 4 8) A706/C707 -1.23 -0.29 2.48 10.56 1.40 25.76 -6 9) C707/G708 0.43 0.44 6.63 -30.22 54.28 26.72 8 10) G708/T709 0.23 -0.87 3.83 -5.15 -12.02 28.27 6 11) T709/T710 0.05 -0.44 3.00 14.37 1.89 39.29 -4 12) T710/T711 0.53 -0.19 3.26 4.69 3.41 36.75 -4 13) T711/G712 -0.92 1.20 3.17 5.28 -13.29 37.80 -9 14) G712/C713 -0.54 -0.77 3.81 -5.30 6.75 23.65 5 15) C713/G714 1.22 -0.21 3.65 -3.32 -6.50 37.97 8 16) G714/T715 -0.83 -0.53 2.51 16.49 13.13 21.82 6 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T715/G714 0.83 0.53 2.51 -16.49 -13.13 21.82 6 3) G714/C713 -1.22 0.21 3.65 3.32 6.50 37.97 8 4) C713/G712 0.54 0.77 3.81 5.30 -6.75 23.65 5 5) G712/T711 0.92 -1.20 3.17 -5.28 13.29 37.80 -9 6) T711/T710 -0.53 0.19 3.26 -4.69 -3.41 36.75 -4 7) T710/T709 -0.05 0.44 3.00 -14.37 -1.89 39.29 -4 8) T709/G708 -0.23 0.87 3.83 5.15 12.02 28.27 6 9) G708/C707 -0.43 -0.44 6.63 30.22 -54.28 26.72 8 10) C707/A706 1.23 0.29 2.48 -10.56 -1.40 25.76 -6 11) A706/A705 -0.28 0.75 3.10 -4.00 10.08 35.01 4 12) A705/A704 0.10 0.05 3.36 1.59 5.12 36.23 4 13) A704/C703 -1.97 -1.28 3.72 1.14 1.84 44.67 9 14) C703/G702 1.23 0.72 3.14 -3.59 6.53 27.76 5 15) G702/C701 0.29 0.33 3.46 -6.38 6.10 36.47 8 16) C701/A700 -0.70 0.37 3.73 1.87 -6.70 23.72 -6 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A700/C701 0.76 -0.45 3.12 -9.18 9.91 22.77 -6 3) C701/G702 -0.76 -0.27 3.56 4.85 -6.30 37.22 8 4) G702/C703 -0.35 -0.74 3.48 4.44 0.11 25.71 5 5) C703/A704 1.45 1.24 3.45 -3.21 -7.56 41.23 9 6) A704/A705 -0.31 -0.12 3.31 -3.14 -0.86 36.49 4 7) A705/A706 0.11 -0.60 3.05 -5.18 -4.09 37.15 4 8) A706/C707 -0.73 -0.58 3.15 7.85 -5.31 27.01 -6 9) C707/G708 0.00 0.44 6.63 -0.00 54.28 26.72 8 10) G708/T709 0.73 -0.58 3.15 -7.85 -5.31 27.01 6 11) T709/T710 -0.11 -0.60 3.05 5.18 -4.09 37.15 -4 12) T710/T711 0.31 -0.12 3.31 3.14 -0.86 36.49 -4 13) T711/G712 -1.45 1.24 3.45 3.21 -7.56 41.23 -9 14) G712/C713 0.35 -0.74 3.48 -4.44 0.11 25.71 5 15) C713/G714 0.76 -0.27 3.56 -4.85 -6.30 37.22 8 16) G714/T715 -0.76 -0.45 3.12 9.18 9.91 22.77 6 Average: 0.00 -0.17 3.52 0.00 1.74 32.13 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A700/C701 0.09 -1.37 3.59 -4.26 2.91 23.67 -6 3) C701/G702 -0.96 -1.01 3.28 2.45 -8.27 36.70 8 4) G702/C703 -1.25 -1.05 3.29 3.57 -4.75 27.54 5 5) C703/A704 2.14 0.80 3.46 2.98 3.76 44.34 9 6) A704/A705 0.07 0.11 3.38 3.30 -0.04 35.96 4 7) A705/A706 0.74 -0.29 3.13 11.58 -2.32 32.87 4 8) A706/C707 -0.56 0.36 2.81 16.90 11.15 20.07 -6 9) C707/G708 0.98 1.52 7.87 -33.71 56.56 23.00 8 10) G708/T709 0.38 -1.48 3.77 -4.33 -14.09 28.48 6 11) T709/T710 0.39 -1.22 2.87 17.10 -1.14 37.96 -4 12) T710/T711 0.74 -0.41 3.26 4.90 4.85 36.78 -4 13) T711/G712 -0.57 1.37 3.07 8.11 -8.95 37.34 -9 14) G712/C713 0.22 -0.94 3.92 -1.41 7.92 24.02 5 15) C713/G714 2.03 -0.92 3.29 2.59 -8.32 37.85 8 16) G714/T715 -0.37 -0.80 2.57 18.46 12.97 20.50 6 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T715/G714 0.37 -0.80 2.57 -18.46 12.97 20.50 6 3) G714/C713 -2.03 -0.92 3.29 -2.59 -8.32 37.85 8 4) C713/G712 -0.22 -0.94 3.92 1.41 7.92 24.02 5 5) G712/T711 0.57 1.37 3.07 -8.11 -8.95 37.34 -9 6) T711/T710 -0.74 -0.41 3.26 -4.90 4.85 36.78 -4 7) T710/T709 -0.39 -1.22 2.87 -17.10 -1.14 37.96 -4 8) T709/G708 -0.38 -1.48 3.77 4.33 -14.09 28.48 6 9) G708/C707 -0.98 1.52 7.87 33.71 56.56 23.00 8 10) C707/A706 0.56 0.36 2.81 -16.90 11.15 20.07 -6 11) A706/A705 -0.74 -0.29 3.13 -11.58 -2.32 32.87 4 12) A705/A704 -0.07 0.11 3.38 -3.30 -0.04 35.96 4 13) A704/C703 -2.14 0.80 3.46 -2.98 3.76 44.34 9 14) C703/G702 1.25 -1.05 3.29 -3.57 -4.75 27.54 5 15) G702/C701 0.96 -1.01 3.28 -2.45 -8.27 36.70 8 16) C701/A700 -0.09 -1.37 3.59 4.26 2.91 23.67 -6 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A700/C701 0.23 -1.04 3.09 -11.39 7.89 22.37 -6 3) C701/G702 -1.49 -0.97 3.30 -0.07 -8.32 37.28 8 4) G702/C703 -0.71 -0.99 3.54 2.50 1.59 25.82 5 5) C703/A704 1.34 1.13 3.30 -2.86 -2.34 40.96 9 6) A704/A705 -0.36 -0.12 3.34 -0.61 2.70 36.26 4 7) A705/A706 0.15 -0.74 3.06 -2.75 -1.17 35.12 4 8) A706/C707 -0.38 -0.44 3.34 10.71 -1.09 26.82 -6 9) C707/G708 0.00 1.49 7.74 -0.00 59.62 22.45 8 10) G708/T709 0.38 -0.44 3.34 -10.71 -1.09 26.82 6 11) T709/T710 -0.15 -0.74 3.06 2.75 -1.17 35.12 -4 12) T710/T711 0.36 -0.12 3.34 0.61 2.70 36.26 -4 13) T711/G712 -1.34 1.13 3.30 2.86 -2.34 40.96 -9 14) G712/C713 0.71 -0.99 3.54 -2.50 1.59 25.82 5 15) C713/G714 1.49 -0.97 3.30 0.07 -8.32 37.28 8 16) G714/T715 -0.23 -1.04 3.09 11.39 7.89 22.37 6 Average: 0.00 -0.32 3.58 -0.00 3.88 31.45 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) A700/C701 0.37 -0.25 -5.00 3.61 0.44 6.17 3.15 -6 3) C701/G702 -0.44 -0.10 -0.89 -3.53 0.45 3.64 3.58 8 4) G702/C703 -0.27 -0.23 -2.75 3.11 0.35 4.15 3.49 5 5) C703/A704 0.74 0.70 -2.74 -0.82 1.02 2.86 3.60 9 6) A704/A705 -0.06 -0.13 -1.23 -1.38 0.14 1.85 3.31 4 7) A705/A706 0.10 -0.37 -4.66 -2.14 0.38 5.13 3.07 4 8) A706/C707 -0.42 -0.35 -2.34 -0.34 0.54 2.36 3.20 -6 9) C707/G708 -0.00 0.35 -0.00 33.70 0.35 33.70 6.36 8 10) G708/T709 0.42 -0.35 2.34 -0.34 0.54 2.36 3.20 6 11) T709/T710 -0.10 -0.37 4.66 -2.14 0.38 5.13 3.07 -4 12) T710/T711 0.06 -0.13 1.23 -1.38 0.14 1.85 3.31 -4 13) T711/G712 -0.74 0.70 2.74 -0.82 1.02 2.86 3.60 -9 14) G712/C713 0.27 -0.23 2.75 3.11 0.35 4.15 3.49 5 15) C713/G714 0.44 -0.10 0.89 -3.53 0.45 3.64 3.58 8 16) G714/T715 -0.37 -0.25 5.00 3.61 0.44 6.17 3.15 6 Overall axis bend ... UU= 37.48 PP= 44.99 Duplex Offset L.Dir ... wrt end-to-end vector 1) A700 0.00 0.00 2) C701 1.36 -168.51 3) G702 2.33 163.18 4) C703 3.53 137.40 5) A704 4.71 109.81 6) A705 6.01 73.87 7) A706 7.26 40.56 8) C707 8.69 13.87 9) G708 8.69 -15.63 10) T709 7.26 -44.84 11) T710 6.01 -82.44 12) T711 4.71 -118.90 13) G712 3.53 -139.62 14) C713 2.33 -161.29 15) G714 1.36 168.90 16) T715 0.00 0.00 Path length= 53.15 End-to-end= 49.06 Shortening= 7.71 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)AA 700 6.70 3.95 77.32 18.08 O1'-endo 107.8 105.5 105.5 2)CA 701 27.60 -8.09 103.11 37.37 O1'-endo 105.3 103.7 104.7 3)GA 702 31.15 -33.34 170.27 34.51 C2'-endo 105.9 102.6 103.0 4)CA 703 23.33 -36.71 198.85 39.53 C3'-exo 106.4 102.5 101.5 5)AA 704 41.50 -32.60 143.75 41.56 C1'-exo 104.2 101.1 103.2 6)AA 705 36.84 -29.63 145.20 36.97 C2'-endo 105.0 102.1 104.0 7)AA 706 26.87 -8.57 104.51 35.67 O1'-endo 105.4 104.0 104.7 8)CA 707 6.32 13.31 66.25 33.57 C4'-exo 106.9 104.7 104.1 9)GA 708 35.17 -35.80 166.13 37.71 C2'-endo 105.7 101.8 102.6 10)TA 709 -14.45 27.44 28.02 31.70 C3'-endo 107.5 103.9 103.4 11)TA 710 39.15 -39.06 164.17 41.52 C2'-endo 105.0 100.6 102.2 12)TA 711 38.53 -38.20 163.88 40.73 C2'-endo 105.3 100.8 102.3 13)GA 712 29.64 -34.28 177.36 35.06 C2'-endo 106.5 102.6 102.7 14)CA 713 27.20 -32.41 179.56 33.07 C2'-endo 106.7 102.9 103.3 15)GA 714 -6.04 21.37 43.68 30.09 C4'-exo 107.8 104.4 104.1 16)TA 715 39.66 -30.32 141.81 39.75 C1'-exo 104.6 101.5 103.5 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)AA 700 -106.97 66.05 107.94 137.96 -68.81 -172.36 -156.20 2)CA 701 -160.20 156.42 107.97 -155.43 -114.15 -32.32 171.91 3)GA 702 -111.37 27.56 146.84 -172.82 -121.58 1.75 -164.59 4)CA 703 -96.13 -17.40 163.56 -162.64 -106.76 -57.27 150.41 5)AA 704 -104.56 58.92 135.98 -158.90 -170.02 0.39 120.40 6)AA 705 -103.49 26.37 135.61 -163.90 -134.72 -16.61 140.22 7)AA 706 -110.73 30.97 109.29 -158.73 -107.23 -64.13 159.50 8)CA 707 -107.10 47.12 95.04 -129.03 -95.49 -28.49 168.79 9)GA 708 -90.50 20.00 148.67 -179.63 -148.52 111.26 -125.24 10)TA 709 -171.92 -156.01 92.86 -173.98 -55.99 -89.30 -159.38 11)TA 710 -107.05 74.09 151.35 -157.82 -133.62 -8.78 154.13 12)TA 711 -88.44 1.21 150.09 -152.89 174.18 -21.89 134.98 13)GA 712 -90.21 35.40 151.13 -154.99 -114.42 39.37 -132.94 14)CA 713 -122.95 -92.52 150.04 -150.64 -104.50 77.34 -133.76 15)GA 714 -159.41 -135.36 94.51 -152.96 -119.01 36.25 111.26 16)TA 715 -94.00 -1.34 134.62 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)TB 715 39.66 -30.32 141.81 39.75 C1'-exo 104.6 101.5 103.5 2)GB 714 -6.04 21.37 43.68 30.09 C4'-exo 107.8 104.4 104.1 3)CB 713 27.20 -32.41 179.56 33.07 C2'-endo 106.7 102.9 103.3 4)GB 712 29.64 -34.28 177.36 35.06 C2'-endo 106.5 102.6 102.7 5)TB 711 38.53 -38.20 163.88 40.73 C2'-endo 105.3 100.8 102.3 6)TB 710 39.15 -39.06 164.17 41.52 C2'-endo 105.0 100.6 102.2 7)TB 709 -14.45 27.44 28.02 31.70 C3'-endo 107.5 103.9 103.4 8)GB 708 35.17 -35.80 166.13 37.71 C2'-endo 105.7 101.8 102.6 9)CB 707 6.32 13.31 66.25 33.57 C4'-exo 106.9 104.7 104.1 10)AB 706 26.87 -8.57 104.51 35.67 O1'-endo 105.4 104.0 104.7 11)AB 705 36.84 -29.63 145.20 36.97 C2'-endo 105.0 102.1 104.0 12)AB 704 41.50 -32.60 143.75 41.56 C1'-exo 104.2 101.1 103.2 13)CB 703 23.33 -36.71 198.85 39.53 C3'-exo 106.4 102.5 101.5 14)GB 702 31.15 -33.34 170.27 34.51 C2'-endo 105.9 102.6 103.0 15)CB 701 27.60 -8.09 103.11 37.37 O1'-endo 105.3 103.7 104.7 16)AB 700 6.70 3.95 77.32 18.08 O1'-endo 107.8 105.5 105.5 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)TB 715 -94.00 -1.34 134.62 ...... ...... ...... ...... 2)GB 714 -159.41 -135.36 94.51 -152.96 -119.01 36.25 111.26 3)CB 713 -122.95 -92.52 150.04 -150.64 -104.50 77.34 -133.76 4)GB 712 -90.21 35.40 151.13 -154.99 -114.42 39.37 -132.94 5)TB 711 -88.44 1.21 150.09 -152.89 174.18 -21.89 134.98 6)TB 710 -107.05 74.09 151.35 -157.82 -133.62 -8.78 154.13 7)TB 709 -171.92 -156.01 92.86 -173.98 -55.99 -89.30 -159.38 8)GB 708 -90.50 20.00 148.67 -179.63 -148.52 111.26 -125.24 9)CB 707 -107.10 47.12 95.04 -129.03 -95.49 -28.49 168.79 10)AB 706 -110.73 30.97 109.29 -158.73 -107.23 -64.13 159.50 11)AB 705 -103.49 26.37 135.61 -163.90 -134.72 -16.61 140.22 12)AB 704 -104.56 58.92 135.98 -158.90 -170.02 0.39 120.40 13)CB 703 -96.13 -17.40 163.56 -162.64 -106.76 -57.27 150.41 14)GB 702 -111.37 27.56 146.84 -172.82 -121.58 1.75 -164.59 15)CB 701 -160.20 156.42 107.97 -155.43 -114.15 -32.32 171.91 16)AB 700 -106.97 66.05 107.94 137.96 -68.81 -172.36 -156.20