ID code: 2DNJ, PDE006 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 17 May 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) GA 309 0.062 1 : 2) CA 310 0.035 1 : 3) GA 311 0.023 1 : 4) AA 312 0.031 1 : 5) TA 313 0.046 1 : 6) CA 314 0.030 1 : 7) GA 301 0.025 1 : 8) CA 302 0.026 1 : 9) GA 303 0.035 1 : 10) AA 304 0.023 1 : 11) TA 305 0.029 1 : 12) CA 306 0.050 1 : 13) GA 307 0.037 1 : 14) CA 308 0.053 2 : 1) CB 308 0.053 2 : 2) GB 307 0.037 2 : 3) CB 306 0.050 2 : 4) TB 305 0.029 2 : 5) AB 304 0.023 2 : 6) GB 303 0.035 2 : 7) CB 302 0.026 2 : 8) GB 301 0.025 2 : 9) CB 314 0.030 2 : 10) TB 313 0.046 2 : 11) AB 312 0.031 2 : 12) GB 311 0.023 2 : 13) CB 310 0.035 2 : 14) GB 309 0.062 Strand: 1 Unit: 6 (CA 314) linkage from atom O3' ( 110) to P absent Strand: 2 Unit: 9 (CB 314) linkage from atom O3' ( 391) to P absent Strand= 2 Nucleo= 28 Atoms = 562 Units = 28 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 14 levels ... Strand 1 has 14 bases (5'-3'): GCGATCGCGATCGC Strand 2 has 14 bases (3'-5'): CGCTAGCGCTAGCG FIRST SUM= 60.514 CPTS: 6.400 1.547 7.202 45.364 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 56 STEP 1 SUM= 60.514 DEL= 0.000E+00 STEP 2 SUM= 50.405 DEL= -0.101E+02 STEP 3 SUM= 43.125 DEL= -0.728E+01 STEP 4 SUM= 39.096 DEL= -0.403E+01 STEP 5 SUM= 36.746 DEL= -0.235E+01 STEP 6 SUM= 34.050 DEL= -0.270E+01 STEP 7 SUM= 31.049 DEL= -0.300E+01 STEP 8 SUM= 29.105 DEL= -0.194E+01 STEP 9 SUM= 29.877 DEL= 0.773E+00 STEP 10 SUM= 28.294 DEL= -0.158E+01 STEP 11 SUM= 27.035 DEL= -0.126E+01 STEP 12 SUM= 25.486 DEL= -0.155E+01 STEP 13 SUM= 24.888 DEL= -0.598E+00 STEP 14 SUM= 23.948 DEL= -0.940E+00 STEP 15 SUM= 22.537 DEL= -0.141E+01 STEP 16 SUM= 22.848 DEL= 0.311E+00 STEP 17 SUM= 21.901 DEL= -0.946E+00 STEP 18 SUM= 21.807 DEL= -0.940E-01 STEP 19 SUM= 21.558 DEL= -0.249E+00 STEP 20 SUM= 20.953 DEL= -0.605E+00 STEP 21 SUM= 20.112 DEL= -0.842E+00 STEP 22 SUM= 26.741 DEL= 0.663E+01 STEP 23 SUM= 19.892 DEL= -0.685E+01 STEP 24 SUM= 19.864 DEL= -0.278E-01 STEP 25 SUM= 19.775 DEL= -0.895E-01 STEP 26 SUM= 19.582 DEL= -0.192E+00 STEP 27 SUM= 19.281 DEL= -0.301E+00 STEP 28 SUM= 19.498 DEL= 0.217E+00 STEP 29 SUM= 19.170 DEL= -0.328E+00 STEP 30 SUM= 19.132 DEL= -0.383E-01 STEP 31 SUM= 19.071 DEL= -0.614E-01 STEP 32 SUM= 18.985 DEL= -0.851E-01 STEP 33 SUM= 18.859 DEL= -0.126E+00 STEP 34 SUM= 18.681 DEL= -0.178E+00 STEP 35 SUM= 19.602 DEL= 0.921E+00 STEP 36 SUM= 18.656 DEL= -0.946E+00 STEP 37 SUM= 18.611 DEL= -0.459E-01 STEP 38 SUM= 18.491 DEL= -0.119E+00 STEP 39 SUM= 18.372 DEL= -0.120E+00 STEP 40 SUM= 18.276 DEL= -0.956E-01 STEP 41 SUM= 18.153 DEL= -0.123E+00 STEP 42 SUM= 18.068 DEL= -0.847E-01 STEP 43 SUM= 18.008 DEL= -0.596E-01 STEP 44 SUM= 18.009 DEL= 0.100E-02 STEP 45 SUM= 17.979 DEL= -0.306E-01 STEP 46 SUM= 17.976 DEL= -0.318E-02 STEP 47 SUM= 17.965 DEL= -0.110E-01 STEP 48 SUM= 17.960 DEL= -0.443E-02 STEP 49 SUM= 17.953 DEL= -0.696E-02 STEP 50 SUM= 17.946 DEL= -0.676E-02 STEP 51 SUM= 17.947 DEL= 0.300E-03 STEP 52 SUM= 17.944 DEL= -0.243E-02 STEP 53 SUM= 17.944 DEL= -0.142E-03 STEP 54 SUM= 17.943 DEL= -0.637E-03 STEP 55 SUM= 17.944 DEL= 0.381E-03 STEP 56 SUM= 17.943 DEL= -0.600E-03 STEP 57 SUM= 17.943 DEL= -0.982E-04 STEP 58 SUM= 17.943 DEL= 0.695E-04 STEP 59 SUM= 17.943 DEL= -0.105E-03 STEP 60 SUM= 17.943 DEL= -0.966E-05 STEP 61 SUM= 17.943 DEL= -0.624E-05 STEP 62 SUM= 17.943 DEL= -0.508E-05 STEP 63 SUM= 17.943 DEL= -0.123E-05 STEP 64 SUM= 17.943 DEL= -0.183E-05 STEP 65 SUM= 17.943 DEL= -0.130E-05 STEP 66 SUM= 17.943 DEL= 0.452E-06 STEP 67 SUM= 17.943 DEL= -0.959E-06 STEP 68 SUM= 17.943 DEL= -0.130E-06 STEP 69 SUM= 17.943 DEL= -0.169E-06 STEP 70 SUM= 17.943 DEL= -0.875E-07 STEP 71 SUM= 17.943 DEL= -0.659E-07 STEP 72 SUM= 17.943 DEL= -0.178E-07 STEP 73 SUM= 17.943 DEL= -0.219E-07 STEP 74 SUM= 17.943 DEL= 0.987E-09 STEP 75 SUM= 17.943 DEL= -0.289E-08 STEP 76 SUM= 17.943 DEL= -0.501E-09 STEP 77 SUM= 17.943 DEL= -0.278E-09 STEP 78 SUM= 17.943 DEL= -0.114E-09 STEP 79 SUM= 17.943 DEL= -0.222E-10 STEP 80 SUM= 17.943 DEL= 0.601E-11 STEP 81 SUM= 17.943 DEL= -0.135E-10 STEP 82 SUM= 17.943 DEL= -0.142E-11 STEP 83 SUM= 17.943 DEL= -0.149E-12 STEP 84 SUM= 17.943 DEL= -0.249E-13 STEP 85 SUM= 17.943 DEL= 0.000E+00 FINAL SUM= 17.943 CPTS: 6.889 4.881 1.176 4.996 GRA= 0.29E-08-0.32E-08 0.32E-08-0.15E-08 0.51E-08 0.23E-08-0.25E-08 0.26E-08 GRA= 0.34E-08 0.32E-08 0.18E-09 0.27E-09-0.10E-08-0.73E-08 0.11E-08-0.23E-08 GRA= 0.83E-09-0.24E-08 0.51E-09-0.23E-09 0.41E-09-0.39E-08 0.60E-09-0.59E-09 GRA= 0.51E-09-0.80E-09-0.22E-09-0.18E-08-0.27E-08-0.27E-08 0.16E-08 0.17E-08 GRA= 0.11E-09-0.41E-08-0.91E-09 0.54E-09-0.76E-09-0.25E-08-0.30E-08-0.11E-08 GRA=-0.21E-08-0.51E-08 0.98E-09-0.18E-08-0.11E-08-0.74E-09 0.15E-08 0.48E-09 GRA=-0.28E-08 0.34E-08-0.25E-08 0.18E-08-0.47E-08-0.41E-08-0.23E-10-0.39E-09 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.132 0.447 -0.885 P: 52.318 44.172 67.495 D: 1.177 2) U: 0.099 0.452 -0.886 P: 52.464 45.791 64.943 D: 1.223 3) U: 0.121 0.386 -0.915 P: 52.454 47.172 61.442 D: 1.069 4) U: 0.112 0.346 -0.931 P: 52.674 48.265 58.511 D: 1.703 5) U: 0.103 0.292 -0.951 P: 53.266 48.855 55.087 D: 1.049 6) U: 0.063 0.209 -0.976 P: 53.572 49.927 51.762 D: 1.989 7) U: 0.016 0.137 -0.990 P: 53.372 50.012 48.312 D: 1.525 8) U: -0.016 0.137 -0.990 P: 53.372 50.088 44.288 D: 1.989 9) U: -0.063 0.209 -0.976 P: 53.572 50.173 40.838 D: 1.049 10) U: -0.103 0.292 -0.951 P: 53.266 51.245 37.513 D: 1.703 11) U: -0.112 0.346 -0.931 P: 52.674 51.835 34.089 D: 1.069 12) U: -0.121 0.386 -0.915 P: 52.454 52.928 31.158 D: 1.223 13) U: -0.099 0.452 -0.886 P: 52.464 54.309 27.657 D: 1.177 14) U: -0.132 0.447 -0.885 P: 52.318 55.928 25.105 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GA 309 -1.11 0.87 5.91 -1.49 1 0 2) CA 310 -1.44 0.46 15.26 1.52 3 -13 3) GA 311 -1.51 0.68 12.92 -8.08 1 10 4) AA 312 -1.71 0.60 10.81 -10.48 2 22 5) TA 313 -1.46 0.35 6.38 -18.61 4 -22 6) CA 314 -1.73 0.39 -0.68 -10.16 3 -10 7) GA 301 -1.32 0.13 -2.10 -10.66 1 13 8) CA 302 -1.38 -0.22 -8.57 -1.91 3 -13 9) GA 303 -1.70 -0.49 0.36 9.49 1 10 10) AA 304 -1.21 -0.47 3.13 4.58 2 22 11) TA 305 -1.65 -0.77 11.07 8.60 4 -22 12) CA 306 -1.51 -0.72 19.39 -4.66 3 -10 13) GA 307 -1.07 -0.48 16.05 -3.95 1 13 14) CA 308 -1.31 -0.70 16.90 -11.14 3 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CB 308 -1.31 -0.70 16.90 -11.14 3 0 2) GB 307 -1.07 -0.48 16.05 -3.95 1 13 3) CB 306 -1.51 -0.72 19.39 -4.66 3 -10 4) TB 305 -1.65 -0.77 11.07 8.60 4 -22 5) AB 304 -1.21 -0.47 3.13 4.58 2 22 6) GB 303 -1.70 -0.49 0.36 9.49 1 10 7) CB 302 -1.38 -0.22 -8.57 -1.91 3 -13 8) GB 301 -1.32 0.13 -2.10 -10.66 1 13 9) CB 314 -1.73 0.39 -0.68 -10.16 3 -10 10) TB 313 -1.46 0.35 6.38 -18.61 4 -22 11) AB 312 -1.71 0.60 10.81 -10.48 2 22 12) GB 311 -1.51 0.68 12.92 -8.08 1 10 13) CB 310 -1.44 0.46 15.26 1.52 3 -13 14) GB 309 -1.11 0.87 5.91 -1.49 1 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) G309-C308 -1.21 0.78 11.40 4.82 1 0 2) C310-G307 -1.25 0.47 15.65 2.74 3 -13 3) G311-C306 -1.51 0.70 16.15 -1.71 1 10 4) A312-T305 -1.68 0.68 10.94 -9.54 2 22 5) T313-A304 -1.33 0.41 4.76 -11.60 4 -22 6) C314-G303 -1.71 0.44 -0.16 -9.82 3 -10 7) G301-C302 -1.35 0.18 -5.34 -4.38 1 13 8) C302-G301 -1.35 -0.18 -5.34 4.38 3 -13 9) G303-C314 -1.71 -0.44 -0.16 9.82 1 10 10) A304-T313 -1.33 -0.41 4.76 11.60 2 22 11) T305-A312 -1.68 -0.68 10.94 9.54 4 -22 12) C306-G311 -1.51 -0.70 16.15 1.71 3 -10 13) G307-C310 -1.25 -0.47 15.65 -2.74 1 13 14) C308-G309 -1.21 -0.78 11.40 -4.82 3 0 Average: -1.44 -0.00 7.63 -0.00 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) G309-C308 0.20 0.16 -0.11 -10.99 -12.63 3.30 1 0 2) C310-G307 -0.37 -0.02 -0.19 -0.79 -2.44 -4.78 3 -13 3) G311-C306 -0.00 -0.04 -0.30 -6.47 -12.74 -3.00 1 10 4) A312-T305 -0.07 -0.17 -0.08 -0.26 -1.88 -7.92 2 22 5) T313-A304 -0.25 -0.13 -0.17 3.25 -14.03 2.68 4 -22 6) C314-G303 -0.02 -0.11 0.02 -1.04 -0.68 -4.60 3 -10 7) G301-C302 0.07 -0.09 -0.31 6.47 -12.57 -3.64 1 13 8) C302-G301 -0.07 -0.09 -0.31 -6.47 -12.57 -3.64 3 -13 9) G303-C314 0.02 -0.11 0.02 1.04 -0.68 -4.60 1 10 10) A304-T313 0.25 -0.13 -0.17 -3.25 -14.03 2.68 2 22 11) T305-A312 0.07 -0.17 -0.08 0.26 -1.88 -7.92 4 -22 12) C306-G311 0.00 -0.04 -0.30 6.47 -12.74 -3.00 3 -10 13) G307-C310 0.37 -0.02 -0.19 0.79 -2.44 -4.78 1 13 14) C308-G309 -0.20 0.16 -0.11 10.99 -12.63 3.30 3 0 Average: 0.00 -0.05 -0.16 0.00 -8.14 -2.57 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G309/C310 -0.45 -0.73 2.97 10.05 1.21 26.57 5 3) C310/G311 -0.39 0.57 3.68 -5.80 -6.99 38.87 8 4) G311/A312 -0.23 0.08 3.25 -3.88 -0.63 32.58 2 5) A312/T313 0.81 -0.44 3.43 -5.14 -4.84 30.05 7 6) T313/C314 -0.45 0.12 3.60 -6.68 13.89 34.92 -2 7) C314/G301 0.95 -0.54 3.24 0.93 3.92 24.50 8 8) G301/C302 -0.07 -0.83 4.00 -6.47 10.53 34.73 5 9) C302/G303 -0.86 -0.56 3.57 6.59 15.82 23.53 8 10) G303/A304 0.68 0.10 3.41 2.39 0.54 42.19 2 11) A304/T305 -0.99 -0.48 3.52 8.65 7.31 19.45 7 12) T305/C306 0.17 0.20 3.02 10.09 -11.49 37.50 -2 13) C306/G307 0.76 0.60 3.79 0.12 3.31 37.09 8 14) G307/C308 -0.12 -0.55 3.04 0.15 -8.99 34.64 5 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C308/G307 0.12 0.55 3.04 -0.15 8.99 34.64 5 3) G307/C306 -0.76 -0.60 3.79 -0.12 -3.31 37.09 8 4) C306/T305 -0.17 -0.20 3.02 -10.09 11.49 37.50 -2 5) T305/A304 0.99 0.48 3.52 -8.65 -7.31 19.45 7 6) A304/G303 -0.68 -0.10 3.41 -2.39 -0.54 42.19 2 7) G303/C302 0.86 0.56 3.57 -6.59 -15.82 23.53 8 8) C302/G301 0.07 0.83 4.00 6.47 -10.53 34.73 5 9) G301/C314 -0.95 0.54 3.24 -0.93 -3.92 24.50 8 10) C314/T313 0.45 -0.12 3.60 6.68 -13.89 34.92 -2 11) T313/A312 -0.81 0.44 3.43 5.14 4.84 30.05 7 12) A312/G311 0.23 -0.08 3.25 3.88 0.63 32.58 2 13) G311/C310 0.39 -0.57 3.68 5.80 6.99 38.87 8 14) C310/G309 0.45 0.73 2.97 -10.05 -1.21 26.57 5 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G309/C310 -0.16 -0.64 3.01 4.95 -3.89 30.60 5 3) C310/G311 -0.58 0.59 3.74 -2.96 -1.84 37.98 8 4) G311/A312 -0.20 0.14 3.13 -6.99 -6.06 35.04 2 5) A312/T313 0.90 -0.46 3.48 -6.90 1.23 24.75 7 6) T313/C314 -0.56 0.11 3.50 -4.54 7.22 38.55 -2 7) C314/G301 0.91 -0.55 3.41 -2.83 9.87 24.01 8 8) G301/C302 -0.00 -0.83 4.00 -0.00 10.53 34.73 5 9) C302/G303 -0.91 -0.55 3.41 2.83 9.87 24.01 8 10) G303/A304 0.56 0.11 3.50 4.54 7.22 38.55 2 11) A304/T305 -0.90 -0.46 3.48 6.90 1.23 24.75 7 12) T305/C306 0.20 0.14 3.13 6.99 -6.06 35.04 -2 13) C306/G307 0.58 0.59 3.74 2.96 -1.84 37.98 8 14) G307/C308 0.16 -0.64 3.01 -4.95 -3.89 30.60 5 Average: -0.00 -0.19 3.42 0.00 1.82 32.05 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G309/C310 -0.80 -0.78 3.12 9.83 5.96 26.58 5 3) C310/G311 -0.56 0.53 3.74 -3.66 2.62 37.30 8 4) G311/A312 -0.04 -0.14 3.43 1.19 5.95 31.77 2 5) A312/T313 1.46 -0.66 3.41 2.35 -0.18 29.55 7 6) T313/C314 0.32 -0.74 3.84 2.31 15.20 35.42 -2 7) C314/G301 1.42 -1.24 3.14 5.20 3.42 24.05 8 8) G301/C302 0.45 -2.05 3.81 -2.46 6.93 35.31 5 9) C302/G303 -1.00 -1.53 3.53 4.73 13.77 24.33 8 10) G303/A304 0.54 -0.79 3.67 -2.88 2.12 41.92 2 11) A304/T305 -1.23 -0.55 3.58 6.28 9.61 19.83 7 12) T305/C306 0.45 0.10 3.19 8.35 -1.09 36.04 -2 13) C306/G307 1.40 0.89 3.65 2.79 14.38 34.55 8 14) G307/C308 0.65 -0.33 3.19 4.49 1.07 33.42 5 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C308/G307 -0.65 -0.33 3.19 -4.49 1.07 33.42 5 3) G307/C306 -1.40 0.89 3.65 -2.79 14.38 34.55 8 4) C306/T305 -0.45 0.10 3.19 -8.35 -1.09 36.04 -2 5) T305/A304 1.23 -0.55 3.58 -6.28 9.61 19.83 7 6) A304/G303 -0.54 -0.79 3.67 2.88 2.12 41.92 2 7) G303/C302 1.00 -1.53 3.53 -4.73 13.77 24.33 8 8) C302/G301 -0.45 -2.05 3.81 2.46 6.93 35.31 5 9) G301/C314 -1.42 -1.24 3.14 -5.20 3.42 24.05 8 10) C314/T313 -0.32 -0.74 3.84 -2.31 15.20 35.42 -2 11) T313/A312 -1.46 -0.66 3.41 -2.35 -0.18 29.55 7 12) A312/G311 0.04 -0.14 3.43 -1.19 5.95 31.77 2 13) G311/C310 0.56 0.53 3.74 3.66 2.62 37.30 8 14) C310/G309 0.80 -0.78 3.12 -9.83 5.96 26.58 5 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G309/C310 -0.72 -0.55 3.15 2.70 3.45 29.83 5 3) C310/G311 -0.98 0.70 3.71 -3.41 8.52 36.16 8 4) G311/A312 -0.26 -0.03 3.31 -3.42 2.23 33.79 2 5) A312/T313 1.34 -0.61 3.48 -2.08 4.61 24.67 7 6) T313/C314 -0.11 -0.77 3.77 2.65 8.66 38.74 -2 7) C314/G301 1.22 -1.38 3.33 0.06 8.42 24.08 8 8) G301/C302 -0.00 -2.07 3.83 -0.00 7.02 35.52 5 9) C302/G303 -1.22 -1.38 3.33 -0.06 8.42 24.08 8 10) G303/A304 0.11 -0.77 3.77 -2.65 8.66 38.74 2 11) A304/T305 -1.34 -0.61 3.48 2.08 4.61 24.67 7 12) T305/C306 0.26 -0.03 3.31 3.42 2.23 33.79 -2 13) C306/G307 0.98 0.70 3.71 3.41 8.52 36.16 8 14) G307/C308 0.72 -0.55 3.15 -2.70 3.45 29.83 5 Average: 0.00 -0.57 3.49 0.00 6.06 31.54 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) G309/C310 -0.12 -0.33 0.70 -1.80 0.35 1.94 3.03 5 3) C310/G311 -0.32 0.36 -3.45 2.60 0.48 4.32 3.76 8 4) G311/A312 -0.03 0.16 -1.78 1.78 0.16 2.52 3.14 2 5) A312/T313 0.55 -0.19 -0.71 3.29 0.58 3.37 3.52 7 6) T313/C314 -0.18 0.08 0.38 5.44 0.20 5.46 3.51 -2 7) C314/G301 0.54 -0.28 2.35 4.42 0.61 5.01 3.46 8 8) G301/C302 -0.00 -0.47 -0.00 1.78 0.47 1.78 4.02 5 9) C302/G303 -0.54 -0.28 -2.35 4.42 0.61 5.01 3.46 8 10) G303/A304 0.18 0.08 -0.38 5.44 0.20 5.46 3.51 2 11) A304/T305 -0.55 -0.19 0.71 3.29 0.58 3.37 3.52 7 12) T305/C306 0.03 0.16 1.78 1.78 0.16 2.52 3.14 -2 13) C306/G307 0.32 0.36 3.45 2.60 0.48 4.32 3.76 8 14) G307/C308 0.12 -0.33 -0.70 -1.80 0.35 1.94 3.03 5 Overall axis bend ... UU= 15.17 PP= 5.52 Duplex Offset L.Dir ... wrt end-to-end vector 1) G309 0.00 0.00 2) C310 0.89 101.03 3) G311 1.28 58.52 4) A312 1.58 32.57 5) T313 1.53 27.62 6) C314 1.84 -2.98 7) G301 1.17 -6.32 8) C302 1.17 9.96 9) G303 1.84 7.58 10) A304 1.53 -30.30 11) T305 1.58 -24.65 12) C306 1.28 -55.52 13) G307 0.89 -96.25 14) C308 0.00 0.00 Path length= 44.85 End-to-end= 43.99 Shortening= 1.92 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GA 309 22.71 -18.49 149.15 22.87 C2'-endo 113.4 97.9 108.7 2)CA 310 30.66 -26.97 153.97 31.48 C2'-endo 108.6 97.7 106.6 3)GA 311 33.04 -30.74 158.70 34.35 C2'-endo 108.6 98.3 105.8 4)AA 312 40.14 -33.03 148.42 40.61 C2'-endo 106.9 96.8 104.9 5)TA 313 -22.47 32.73 14.85 35.14 C3'-endo 111.2 97.4 105.0 6)CA 314 35.32 -34.87 164.26 37.81 C2'-endo 107.8 97.1 105.0 7)GA 301 -47.94 40.04 330.39 48.76 C2'-exo 106.8 92.0 104.5 8)CA 302 -32.06 31.47 344.84 34.28 C2'-exo 110.1 97.2 105.3 9)GA 303 32.31 -30.71 162.37 34.13 C2'-endo 111.1 95.6 106.9 10)AA 304 -18.36 32.28 25.22 36.94 C3'-endo 111.6 98.8 103.0 11)TA 305 25.10 -19.97 144.55 25.35 C2'-endo 108.2 101.7 106.6 12)CA 306 32.69 -28.02 150.65 33.25 C2'-endo 107.9 99.2 106.5 13)GA 307 40.70 -36.00 154.21 41.74 C2'-endo 107.1 95.6 106.5 14)CA 308 -47.85 53.56 356.27 56.42 C2'-exo 107.0 90.4 99.0 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GA 309 -131.90 53.29 129.69 -147.99 -92.94 -85.84 -170.81 2)CA 310 -87.02 41.90 129.91 -20.05 93.49 -162.23 -156.91 3)GA 311 -91.13 85.17 133.58 -165.44 -106.93 -69.60 177.93 4)AA 312 -91.45 39.74 136.21 -164.10 -59.51 -125.87 82.07 5)TA 313 -157.75 161.20 84.13 -144.49 -71.99 -65.64 176.90 6)CA 314 -113.72 60.37 147.04 ...... ...... ...... ...... 7)GA 301 -167.45 56.02 94.50 -147.08 -61.38 -75.76 -179.75 8)CA 302 -159.75 58.67 97.77 -153.72 -75.82 -70.63 -162.46 9)GA 303 -113.56 51.12 144.46 -153.35 -121.33 -69.47 164.04 10)AA 304 -142.77 44.42 86.61 -168.68 -80.97 -68.46 179.29 11)TA 305 -118.22 64.24 126.76 -168.16 -98.14 -64.03 166.19 12)CA 306 -99.30 60.30 131.04 -151.44 -92.10 -77.44 172.69 13)GA 307 -76.27 43.01 140.59 -129.01 -162.52 68.15 -138.48 14)CA 308 -148.90 -165.96 77.49 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CB 308 -47.85 53.56 356.27 56.42 C2'-exo 107.0 90.4 99.0 2)GB 307 40.70 -36.00 154.21 41.74 C2'-endo 107.1 95.6 106.5 3)CB 306 32.69 -28.02 150.65 33.25 C2'-endo 107.9 99.2 106.5 4)TB 305 25.10 -19.97 144.55 25.35 C2'-endo 108.2 101.7 106.6 5)AB 304 -18.36 32.28 25.22 36.94 C3'-endo 111.6 98.8 103.0 6)GB 303 32.31 -30.71 162.37 34.13 C2'-endo 111.1 95.6 106.9 7)CB 302 -32.06 31.47 344.84 34.28 C2'-exo 110.1 97.2 105.3 8)GB 301 -47.94 40.04 330.39 48.76 C2'-exo 106.8 92.0 104.5 9)CB 314 35.32 -34.87 164.26 37.81 C2'-endo 107.8 97.1 105.0 10)TB 313 -22.47 32.73 14.85 35.14 C3'-endo 111.2 97.4 105.0 11)AB 312 40.14 -33.03 148.42 40.61 C2'-endo 106.9 96.8 104.9 12)GB 311 33.04 -30.74 158.70 34.35 C2'-endo 108.6 98.3 105.8 13)CB 310 30.66 -26.97 153.97 31.48 C2'-endo 108.6 97.7 106.6 14)GB 309 22.71 -18.49 149.15 22.87 C2'-endo 113.4 97.9 108.7 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CB 308 -148.90 -165.96 77.49 ...... ...... ...... ...... 2)GB 307 -76.27 43.01 140.59 -129.01 -162.52 68.15 -138.48 3)CB 306 -99.30 60.30 131.04 -151.44 -92.10 -77.44 172.69 4)TB 305 -118.22 64.24 126.76 -168.16 -98.14 -64.03 166.19 5)AB 304 -142.77 44.42 86.61 -168.68 -80.97 -68.46 179.29 6)GB 303 -113.56 51.12 144.46 -153.35 -121.33 -69.47 164.04 7)CB 302 -159.75 58.67 97.77 -153.72 -75.82 -70.63 -162.46 8)GB 301 -167.45 56.02 94.50 -147.08 -61.38 -75.76 -179.75 9)CB 314 -113.72 60.37 147.04 ...... ...... ...... ...... 10)TB 313 -157.75 161.20 84.13 -144.49 -71.99 -65.64 176.90 11)AB 312 -91.45 39.74 136.21 -164.10 -59.51 -125.87 82.07 12)GB 311 -91.13 85.17 133.58 -165.44 -106.93 -69.60 177.93 13)CB 310 -87.02 41.90 129.91 -20.05 93.49 -162.23 -156.91 14)GB 309 -131.90 53.29 129.69 -147.99 -92.94 -85.84 -170.81