ID code: 1REP, PD0107 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 18 May 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) CA 1 0.055 1 : 2) CA 2 0.052 1 : 3) TA 3 0.048 1 : 4) GA 4 0.022 1 : 5) TA 5 0.020 1 : 6) GA 6 0.021 1 : 7) AA 7 0.019 1 : 8) CA 8 0.011 1 : 9) AA 9 0.016 1 : 10) AA 10 0.018 1 : 11) AA 11 0.013 1 : 12) TA 12 0.022 1 : 13) TA 13 0.032 1 : 14) GA 14 0.024 1 : 15) CA 15 0.019 1 : 16) CA 16 0.021 1 : 17) CA 17 0.020 1 : 18) TA 18 0.026 1 : 19) CA 19 0.010 1 : 20) AA 20 0.017 1 : 21) GA 21 0.024 2 : 1) GB 43 0.022 2 : 2) GB 42 0.026 2 : 3) AB 41 0.016 2 : 4) CB 40 0.016 2 : 5) AB 39 0.024 2 : 6) CB 38 0.019 2 : 7) TB 37 0.023 2 : 8) GB 36 0.012 2 : 9) TB 35 0.018 2 : 10) TB 34 0.020 2 : 11) TB 33 0.023 2 : 12) AB 32 0.013 2 : 13) AB 31 0.015 2 : 14) CB 30 0.021 2 : 15) GB 29 0.024 2 : 16) GB 28 0.028 2 : 17) GB 27 0.038 2 : 18) AB 26 0.022 2 : 19) GB 25 0.022 2 : 20) TB 24 0.019 2 : 21) CB 23 0.021 Strand= 2 Nucleo= 42 Atoms = 855 Units = 42 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 21 levels ... Strand 1 has 21 bases (5'-3'): CCTGTGACAAATTGCCCTCAG Strand 2 has 21 bases (3'-5'): GGACACTGTTTAACGGGAGTC FIRST SUM= 59.799 CPTS: 5.030 1.800 11.510 41.460 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 84 STEP 1 SUM= 59.799 DEL= 0.000E+00 STEP 2 SUM= 48.023 DEL= -0.118E+02 STEP 3 SUM= 45.952 DEL= -0.207E+01 STEP 4 SUM= 41.566 DEL= -0.439E+01 STEP 5 SUM= 36.086 DEL= -0.548E+01 STEP 6 SUM= 31.078 DEL= -0.501E+01 STEP 7 SUM= 30.836 DEL= -0.242E+00 STEP 8 SUM= 28.511 DEL= -0.233E+01 STEP 9 SUM= 29.147 DEL= 0.636E+00 STEP 10 SUM= 27.368 DEL= -0.178E+01 STEP 11 SUM= 26.121 DEL= -0.125E+01 STEP 12 SUM= 24.947 DEL= -0.117E+01 STEP 13 SUM= 24.443 DEL= -0.504E+00 STEP 14 SUM= 23.710 DEL= -0.733E+00 STEP 15 SUM= 23.098 DEL= -0.613E+00 STEP 16 SUM= 22.584 DEL= -0.514E+00 STEP 17 SUM= 21.953 DEL= -0.631E+00 STEP 18 SUM= 21.384 DEL= -0.569E+00 STEP 19 SUM= 21.056 DEL= -0.328E+00 STEP 20 SUM= 20.646 DEL= -0.410E+00 STEP 21 SUM= 20.277 DEL= -0.369E+00 STEP 22 SUM= 20.021 DEL= -0.256E+00 STEP 23 SUM= 19.710 DEL= -0.310E+00 STEP 24 SUM= 19.800 DEL= 0.897E-01 STEP 25 SUM= 19.575 DEL= -0.225E+00 STEP 26 SUM= 19.370 DEL= -0.205E+00 STEP 27 SUM= 19.606 DEL= 0.237E+00 STEP 28 SUM= 19.304 DEL= -0.302E+00 STEP 29 SUM= 19.180 DEL= -0.124E+00 STEP 30 SUM= 18.651 DEL= -0.530E+00 STEP 31 SUM= 31.555 DEL= 0.129E+02 STEP 32 SUM= 18.662 DEL= -0.129E+02 STEP 33 SUM= 18.621 DEL= -0.414E-01 STEP 34 SUM= 18.581 DEL= -0.400E-01 STEP 35 SUM= 18.517 DEL= -0.636E-01 STEP 36 SUM= 18.417 DEL= -0.997E-01 STEP 37 SUM= 18.342 DEL= -0.754E-01 STEP 38 SUM= 18.446 DEL= 0.104E+00 STEP 39 SUM= 18.320 DEL= -0.126E+00 STEP 40 SUM= 18.287 DEL= -0.328E-01 STEP 41 SUM= 18.230 DEL= -0.571E-01 STEP 42 SUM= 18.160 DEL= -0.694E-01 STEP 43 SUM= 18.054 DEL= -0.106E+00 STEP 44 SUM= 18.048 DEL= -0.608E-02 STEP 45 SUM= 17.999 DEL= -0.486E-01 STEP 46 SUM= 17.968 DEL= -0.314E-01 STEP 47 SUM= 17.973 DEL= 0.464E-02 STEP 48 SUM= 17.953 DEL= -0.193E-01 STEP 49 SUM= 17.937 DEL= -0.164E-01 STEP 50 SUM= 17.910 DEL= -0.271E-01 STEP 51 SUM= 17.872 DEL= -0.381E-01 STEP 52 SUM= 17.883 DEL= 0.116E-01 STEP 53 SUM= 17.855 DEL= -0.281E-01 STEP 54 SUM= 17.836 DEL= -0.187E-01 STEP 55 SUM= 17.814 DEL= -0.221E-01 STEP 56 SUM= 17.786 DEL= -0.281E-01 STEP 57 SUM= 17.746 DEL= -0.399E-01 STEP 58 SUM= 17.730 DEL= -0.159E-01 STEP 59 SUM= 17.706 DEL= -0.239E-01 STEP 60 SUM= 17.682 DEL= -0.244E-01 STEP 61 SUM= 17.666 DEL= -0.156E-01 STEP 62 SUM= 17.667 DEL= 0.427E-03 STEP 63 SUM= 17.659 DEL= -0.814E-02 STEP 64 SUM= 17.656 DEL= -0.281E-02 STEP 65 SUM= 17.652 DEL= -0.339E-02 STEP 66 SUM= 17.651 DEL= -0.970E-03 STEP 67 SUM= 17.650 DEL= -0.133E-02 STEP 68 SUM= 17.649 DEL= -0.751E-03 STEP 69 SUM= 17.649 DEL= -0.432E-04 STEP 70 SUM= 17.649 DEL= -0.343E-03 STEP 71 SUM= 17.649 DEL= -0.108E-03 STEP 72 SUM= 17.649 DEL= -0.149E-03 STEP 73 SUM= 17.649 DEL= 0.236E-04 STEP 74 SUM= 17.649 DEL= -0.926E-04 STEP 75 SUM= 17.649 DEL= 0.321E-04 STEP 76 SUM= 17.649 DEL= -0.554E-04 STEP 77 SUM= 17.649 DEL= 0.553E-05 STEP 78 SUM= 17.649 DEL= -0.998E-05 STEP 79 SUM= 17.649 DEL= 0.958E-08 STEP 80 SUM= 17.649 DEL= -0.173E-05 STEP 81 SUM= 17.649 DEL= 0.693E-06 STEP 82 SUM= 17.649 DEL= -0.115E-05 STEP 83 SUM= 17.649 DEL= 0.245E-07 STEP 84 SUM= 17.649 DEL= -0.192E-06 STEP 85 SUM= 17.649 DEL= 0.704E-08 STEP 86 SUM= 17.649 DEL= -0.684E-07 STEP 87 SUM= 17.649 DEL= -0.427E-07 STEP 88 SUM= 17.649 DEL= -0.475E-07 STEP 89 SUM= 17.649 DEL= -0.702E-08 STEP 90 SUM= 17.649 DEL= -0.186E-07 STEP 91 SUM= 17.649 DEL= -0.777E-08 STEP 92 SUM= 17.649 DEL= -0.573E-08 STEP 93 SUM= 17.649 DEL= 0.492E-09 STEP 94 SUM= 17.649 DEL= -0.324E-08 STEP 95 SUM= 17.649 DEL= 0.392E-09 STEP 96 SUM= 17.649 DEL= -0.116E-08 STEP 97 SUM= 17.649 DEL= -0.125E-09 STEP 98 SUM= 17.649 DEL= -0.217E-09 STEP 99 SUM= 17.649 DEL= -0.258E-09 STEP 100 SUM= 17.649 DEL= 0.829E-10 STEP 101 SUM= 17.649 DEL= -0.294E-09 STEP 102 SUM= 17.649 DEL= -0.144E-10 STEP 103 SUM= 17.649 DEL= -0.623E-10 STEP 104 SUM= 17.649 DEL= -0.142E-10 STEP 105 SUM= 17.649 DEL= -0.204E-10 STEP 106 SUM= 17.649 DEL= 0.959E-12 STEP 107 SUM= 17.649 DEL= -0.109E-10 STEP 108 SUM= 17.649 DEL= 0.106E-11 STEP 109 SUM= 17.649 DEL= -0.400E-11 STEP 110 SUM= 17.649 DEL= 0.899E-12 STEP 111 SUM= 17.649 DEL= -0.130E-11 STEP 112 SUM= 17.649 DEL= 0.462E-13 STEP 113 SUM= 17.649 DEL= -0.462E-13 FINAL SUM= 17.649 CPTS: 4.457 6.367 1.600 5.225 GRA= 0.16E-07-0.14E-07-0.14E-07 0.33E-09 0.14E-08-0.17E-07 0.93E-08-0.45E-08 GRA= 0.42E-07 0.12E-07-0.59E-09 0.88E-08-0.11E-07-0.15E-07 0.12E-07 0.35E-08 GRA=-0.71E-08 0.33E-07-0.35E-08 0.17E-07-0.27E-08-0.21E-07-0.14E-07 0.23E-08 GRA=-0.83E-08 0.43E-08-0.19E-07-0.19E-07 0.14E-07-0.99E-08 0.22E-07-0.73E-08 GRA=-0.31E-09 0.11E-07-0.18E-07-0.11E-07-0.45E-08 0.24E-07 0.13E-07 0.15E-07 GRA=-0.17E-07-0.12E-07-0.11E-07-0.11E-07-0.37E-08-0.13E-07 0.66E-08-0.10E-07 GRA=-0.99E-08 0.37E-07-0.25E-07 0.24E-07-0.29E-07-0.21E-07-0.70E-08-0.33E-07 GRA=-0.43E-08 0.12E-07 0.14E-07-0.35E-09 0.78E-09-0.27E-07-0.81E-08-0.18E-08 GRA=-0.11E-07-0.17E-07-0.59E-08 0.58E-08-0.12E-07 0.34E-07 0.14E-07 0.16E-07 GRA= 0.37E-08-0.57E-07-0.44E-08-0.23E-07-0.52E-08-0.32E-07-0.13E-08-0.13E-07 GRA=-0.14E-07 0.64E-07 0.23E-07 0.11E-07 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: -0.894 0.434 -0.113 P: 33.292 6.967 45.878 D: 0.697 2) U: -0.920 0.380 -0.091 P: 30.003 8.227 45.669 D: 1.595 3) U: -0.905 0.426 -0.015 P: 26.484 9.414 45.327 D: 0.741 4) U: -0.883 0.465 0.059 P: 23.743 10.985 45.250 D: 0.842 5) U: -0.899 0.431 0.077 P: 20.769 12.145 45.772 D: 0.921 6) U: -0.894 0.438 0.090 P: 17.611 13.627 45.644 D: 0.365 7) U: -0.869 0.488 0.084 P: 14.835 15.158 46.090 D: 0.635 8) U: -0.859 0.507 0.065 P: 12.382 16.861 46.492 D: 0.461 9) U: -0.863 0.505 0.024 P: 9.250 18.504 46.689 D: 0.690 10) U: -0.815 0.579 0.020 P: 6.199 20.313 47.011 D: 0.396 11) U: -0.792 0.611 -0.001 P: 3.487 22.177 46.802 D: 0.547 12) U: -0.739 0.672 -0.032 P: 1.020 24.217 46.487 D: 0.261 13) U: -0.710 0.704 -0.024 P: -1.169 26.529 46.422 D: 2.542 14) U: -0.705 0.709 0.011 P: -3.094 29.467 46.126 D: 1.228 15) U: -0.758 0.649 0.065 P: -5.338 31.600 46.695 D: 2.011 16) U: -0.694 0.719 0.027 P: -8.190 33.933 47.260 D: 0.180 17) U: -0.660 0.751 -0.013 P: -10.496 36.531 47.341 D: 1.125 18) U: -0.636 0.769 -0.068 P: -12.476 39.368 47.502 D: 1.066 19) U: -0.617 0.784 -0.070 P: -14.600 41.772 46.963 D: 1.130 20) U: -0.634 0.772 -0.038 P: -16.697 44.351 47.263 D: 0.213 21) U: -0.640 0.763 -0.092 P: -18.850 46.853 46.936 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CA 1 -1.90 0.08 7.74 -12.54 3 0 2) CA 2 -1.68 0.01 5.47 -5.92 3 -3 3) TA 3 -1.70 -0.22 -1.96 1.71 4 -25 4) GA 4 -1.55 0.12 2.88 4.33 1 16 5) TA 5 -1.61 -0.24 9.36 0.53 4 -29 6) GA 6 -1.54 0.22 6.54 1.88 1 12 7) AA 7 -1.56 0.04 9.39 1.13 2 21 8) CA 8 -1.58 -0.19 15.49 2.68 3 -16 9) AA 9 -1.37 -0.09 12.67 -1.28 2 26 10) AA 10 -1.39 0.11 7.92 -8.33 2 20 11) AA 11 -1.32 -0.18 3.12 -7.14 2 24 12) TA 12 -1.41 -0.32 6.63 -7.01 4 -24 13) TA 13 -1.31 -0.23 10.50 -8.88 4 -26 14) GA 14 -1.41 0.51 9.72 -5.92 1 15 15) CA 15 -1.48 0.21 11.74 -7.43 3 -5 16) CA 16 -1.94 -0.23 1.42 4.02 3 -1 17) CA 17 -1.93 -0.26 0.29 4.70 3 -3 18) TA 18 -1.94 -0.69 1.95 3.62 4 -17 19) CA 19 -1.44 -0.38 8.13 5.60 3 -12 20) AA 20 -1.67 -0.13 12.40 3.54 2 25 21) GA 21 -1.58 -0.24 14.09 2.15 1 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GB 43 -1.98 -0.07 -2.33 8.28 1 0 2) GB 42 -1.75 -0.07 1.99 5.65 1 3 3) AB 41 -1.76 0.18 8.25 -0.29 2 25 4) CB 40 -1.68 -0.08 4.13 -5.11 3 -16 5) AB 39 -1.60 0.24 3.11 -7.67 2 29 6) CB 38 -1.41 -0.13 8.00 -3.50 3 -12 7) TB 37 -1.52 -0.01 3.33 -8.31 4 -21 8) GB 36 -1.46 0.34 -0.51 -8.07 1 16 9) TB 35 -1.34 0.17 2.52 -12.11 4 -26 10) TB 34 -1.39 -0.11 4.67 -10.34 4 -20 11) TB 33 -1.37 0.08 5.69 -9.05 4 -24 12) AB 32 -1.38 0.35 7.18 -3.62 2 24 13) AB 31 -1.29 0.22 9.48 -1.02 2 26 14) CB 30 -1.54 -0.41 3.25 6.85 3 -15 15) GB 29 -1.59 -0.16 -6.60 4.02 1 5 16) GB 28 -1.89 0.15 -3.64 1.73 1 1 17) GB 27 -1.89 0.23 -2.59 -1.80 1 3 18) AB 26 -1.82 0.64 3.56 -8.17 2 17 19) GB 25 -1.36 0.52 9.53 -8.38 1 12 20) TB 24 -1.78 0.05 7.22 -8.39 4 -25 21) CB 23 -1.76 0.17 9.73 -9.57 3 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) C 1-G 43 -1.94 0.07 2.71 -10.41 3 0 2) C 2-G 42 -1.71 0.04 3.73 -5.78 3 -3 3) T 3-A 41 -1.73 -0.20 3.14 1.00 4 -25 4) G 4-C 40 -1.62 0.10 3.51 4.72 1 16 5) T 5-A 39 -1.61 -0.24 6.23 4.10 4 -29 6) G 6-C 38 -1.48 0.18 7.27 2.69 1 12 7) A 7-T 37 -1.54 0.02 6.36 4.72 2 21 8) C 8-G 36 -1.52 -0.27 7.49 5.37 3 -16 9) A 9-T 35 -1.35 -0.13 7.60 5.41 2 26 10) A 10-T 34 -1.39 0.11 6.29 1.00 2 20 11) A 11-T 33 -1.34 -0.13 4.41 0.96 2 24 12) T 12-A 32 -1.39 -0.33 6.91 -1.69 4 -24 13) T 13-A 31 -1.30 -0.23 9.99 -3.93 4 -26 14) G 14-C 30 -1.48 0.46 6.48 -6.38 1 15 15) C 15-G 29 -1.53 0.18 2.57 -5.73 3 -5 16) C 16-G 28 -1.92 -0.19 -1.11 1.15 3 -1 17) C 17-G 27 -1.91 -0.25 -1.15 3.25 3 -3 18) T 18-A 26 -1.88 -0.66 2.75 5.90 4 -17 19) C 19-G 25 -1.40 -0.45 8.83 6.99 3 -12 20) A 20-T 24 -1.72 -0.09 9.81 5.96 2 25 21) G 21-C 23 -1.67 -0.20 11.91 5.86 1 0 Average: -1.59 -0.11 5.51 1.20 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) C 1-G 43 0.08 0.00 -0.49 10.07 -4.25 1.17 3 0 2) C 2-G 42 0.07 -0.06 -0.84 3.48 -0.27 0.77 3 -3 3) T 3-A 41 0.05 -0.04 0.15 -10.21 1.42 4.23 4 -25 4) G 4-C 40 0.13 0.03 0.23 -1.25 -0.78 -1.47 1 16 5) T 5-A 39 -0.00 0.00 -0.03 6.25 -7.14 -2.78 4 -29 6) G 6-C 38 -0.13 0.09 -0.04 -1.47 -1.63 1.16 1 12 7) A 7-T 37 -0.05 0.02 -0.28 6.06 -7.18 6.88 2 21 8) C 8-G 36 -0.12 0.16 -0.61 16.00 -5.38 -0.32 3 -16 9) A 9-T 35 -0.03 0.08 -0.28 10.15 -13.39 0.51 2 26 10) A 10-T 34 0.00 -0.01 -0.38 3.25 -18.67 3.04 2 20 11) A 11-T 33 0.05 -0.10 -0.16 -2.57 -16.19 5.35 2 24 12) T 12-A 32 -0.03 0.04 -0.15 -0.55 -10.63 3.26 4 -24 13) T 13-A 31 -0.02 -0.02 -0.37 1.02 -9.90 3.49 4 -26 14) G 14-C 30 0.13 0.11 -0.21 6.47 0.93 0.11 1 15 15) C 15-G 29 0.11 0.04 -0.72 18.34 -3.42 3.07 3 -5 16) C 16-G 28 -0.04 -0.08 -0.19 5.06 5.74 -1.16 3 -1 17) C 17-G 27 -0.04 -0.03 -0.06 2.88 2.90 -0.54 3 -3 18) T 18-A 26 -0.12 -0.05 -0.01 -1.60 -4.55 1.55 4 -17 19) C 19-G 25 -0.09 0.14 0.01 -1.41 -2.78 2.52 3 -12 20) A 20-T 24 0.11 -0.08 0.25 5.18 -4.84 1.07 2 25 21) G 21-C 23 0.18 -0.07 -0.14 4.35 -7.41 -3.57 1 0 Average: 0.01 0.01 -0.21 3.79 -5.12 1.35 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 1/C 2 0.45 -0.14 3.34 -0.20 9.66 34.30 -1 3) C 2/T 3 -0.17 -0.57 4.21 -10.24 11.92 36.24 -3 4) T 3/G 4 0.14 0.57 3.19 5.07 7.58 32.52 -9 5) G 4/T 5 -0.21 -0.76 3.07 8.30 -5.33 27.18 6 6) T 5/G 6 0.09 0.88 3.46 -2.00 1.69 41.92 -9 7) G 6/A 7 -0.09 -0.35 3.08 4.89 1.78 32.35 2 8) A 7/C 8 -0.12 -0.51 2.83 6.96 2.95 26.48 -6 9) C 8/A 9 0.22 0.27 3.70 -2.28 -1.69 37.45 9 10) A 9/A 10 -0.05 0.48 3.51 -1.75 -11.05 40.48 4 11) A 10/A 11 0.17 -0.54 3.40 -3.77 -1.19 38.67 4 12) A 11/T 12 -0.24 -0.35 3.21 1.84 -4.52 33.44 7 13) T 12/T 13 0.07 0.25 3.07 1.36 -2.00 37.82 -4 14) T 13/G 14 -0.06 1.52 3.52 -0.38 4.93 34.33 -9 15) G 14/C 15 0.22 -0.66 2.87 7.13 -3.59 31.96 5 16) C 15/C 16 -0.69 -0.85 3.96 -12.84 16.69 26.97 -1 17) C 16/C 17 0.04 -0.11 3.54 -1.93 4.15 33.31 -1 18) C 17/T 18 -0.10 -0.87 3.46 1.50 2.49 30.78 -3 19) T 18/C 19 0.82 0.45 3.24 7.57 2.08 35.97 -2 20) C 19/A 20 -0.59 0.55 3.42 2.22 -2.82 35.38 9 21) A 20/G 21 0.17 -0.20 3.12 4.53 0.02 35.69 3 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 43/G 42 0.47 0.08 3.70 6.39 -5.68 34.70 1 3) G 42/A 41 -0.15 0.59 3.22 3.45 -10.23 32.78 3 4) A 41/C 40 0.06 -0.50 3.11 -3.88 -9.78 38.22 9 5) C 40/A 39 -0.07 0.73 3.34 0.80 -1.03 28.50 -6 6) A 39/C 38 0.22 -0.79 3.47 5.71 3.82 37.98 9 7) C 38/T 37 -0.18 0.28 3.32 -2.63 -7.33 26.63 -2 8) T 37/G 36 -0.05 0.65 3.17 -2.98 -1.16 33.68 6 9) G 36/T 35 0.14 -0.35 3.37 3.57 -6.32 36.63 -9 10) T 35/T 34 -0.08 -0.56 3.60 5.16 5.77 37.95 -4 11) T 34/T 33 0.12 0.44 3.18 2.05 3.68 36.36 -4 12) T 33/A 32 -0.16 0.49 3.20 -0.18 10.07 35.53 7 13) A 32/A 31 0.06 -0.30 3.29 -0.20 2.72 37.59 4 14) A 31/C 30 -0.22 -1.39 3.36 -5.83 5.90 37.71 9 15) C 30/G 29 0.23 0.60 3.37 -4.73 -0.75 29.00 5 16) G 29/G 28 -0.54 0.73 3.44 0.43 -7.53 31.20 1 17) G 28/G 27 0.04 0.16 3.41 0.25 -6.99 32.69 1 18) G 27/A 26 -0.02 0.85 3.41 5.98 -9.94 28.70 3 19) A 26/G 25 0.78 -0.26 3.23 7.37 -0.31 34.99 2 20) G 25/T 24 -0.79 -0.77 3.18 -4.37 0.76 36.84 -9 21) T 24/C 23 0.10 0.20 3.51 5.35 -2.59 40.33 -3 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 1/C 2 0.46 -0.11 3.52 3.10 7.67 34.50 -1 3) C 2/T 3 -0.16 -0.58 3.72 -3.39 11.08 34.51 -3 4) T 3/G 4 0.10 0.54 3.15 0.59 8.68 35.37 -9 5) G 4/T 5 -0.14 -0.74 3.21 4.55 -2.15 27.84 6 6) T 5/G 6 0.16 0.84 3.47 1.86 -1.07 39.95 -9 7) G 6/A 7 -0.14 -0.32 3.20 1.13 4.56 29.49 2 8) A 7/C 8 -0.08 -0.58 3.00 1.99 2.06 30.08 -6 9) C 8/A 9 0.18 0.31 3.54 0.65 2.32 37.04 9 10) A 9/A 10 -0.06 0.52 3.55 1.70 -8.41 39.22 4 11) A 10/A 11 0.15 -0.49 3.29 -0.86 -2.43 37.51 4 12) A 11/T 12 -0.20 -0.42 3.21 0.83 -7.30 34.48 7 13) T 12/T 13 0.07 0.28 3.18 0.58 -2.36 37.70 -4 14) T 13/G 14 -0.14 1.46 3.44 -3.10 -0.48 36.02 -9 15) G 14/C 15 0.22 -0.63 3.12 1.20 -1.42 30.48 5 16) C 15/C 16 -0.61 -0.79 3.70 -6.20 12.11 29.09 -1 17) C 16/C 17 0.04 -0.13 3.48 -0.84 5.57 33.00 -1 18) C 17/T 18 -0.06 -0.86 3.44 3.74 6.21 29.74 -3 19) T 18/C 19 0.80 0.35 3.23 7.47 1.19 35.48 -2 20) C 19/A 20 -0.69 0.66 3.30 -1.07 -1.79 36.11 9 21) A 20/G 21 0.14 -0.20 3.32 4.94 1.31 38.01 3 Average: 0.00 -0.04 3.35 0.94 1.77 34.28 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 1/C 2 0.96 -0.86 3.45 5.33 13.21 33.52 -1 3) C 2/T 3 0.13 -1.58 4.38 -8.55 12.63 36.73 -3 4) T 3/G 4 -0.04 -0.35 3.34 3.25 7.72 32.76 -9 5) G 4/T 5 -0.34 -1.15 3.17 7.00 -2.30 27.57 6 6) T 5/G 6 0.05 0.16 3.49 -2.68 7.27 41.50 -9 7) G 6/A 7 -0.28 -0.77 3.28 4.05 6.14 31.85 2 8) A 7/C 8 -0.23 -0.60 3.06 6.03 8.50 25.87 -6 9) C 8/A 9 0.28 0.25 3.82 -2.57 7.40 35.75 9 10) A 9/A 10 0.29 0.17 3.43 1.82 -3.52 40.54 4 11) A 10/A 11 0.67 -1.12 3.39 1.56 2.36 38.87 4 12) A 11/T 12 0.25 -0.87 3.19 5.60 -1.64 33.28 7 13) T 12/T 13 0.63 -0.18 3.09 6.23 3.70 36.91 -4 14) T 13/G 14 0.29 1.24 3.42 3.97 10.70 33.34 -9 15) G 14/C 15 0.35 -0.89 3.05 10.64 2.29 30.84 5 16) C 15/C 16 -0.47 -1.27 4.35 -12.06 19.27 27.05 -1 17) C 16/C 17 -0.08 -1.17 3.68 -4.40 4.60 33.04 -1 18) C 17/T 18 -0.11 -1.81 3.61 -0.75 3.12 30.73 -3 19) T 18/C 19 0.81 -0.36 3.37 4.42 5.06 36.37 -2 20) C 19/A 20 -0.72 0.21 3.38 -0.74 3.52 35.00 9 21) A 20/G 21 0.11 -0.46 3.35 2.75 8.13 34.64 3 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 43/G 42 0.83 -1.24 3.74 10.30 5.45 33.83 1 3) G 42/A 41 0.00 -1.32 3.47 4.64 12.79 32.27 3 4) A 41/C 40 -0.03 -0.35 3.33 -5.52 13.52 37.47 9 5) C 40/A 39 -0.40 -1.34 3.35 -2.35 2.70 28.46 -6 6) A 39/C 38 -0.12 0.15 3.49 1.81 0.01 38.14 9 7) C 38/T 37 -0.51 -0.66 3.44 -5.30 9.86 25.93 -2 8) T 37/G 36 -0.35 -1.42 3.22 -7.55 2.01 32.93 6 9) G 36/T 35 -0.30 -0.52 3.44 -2.94 6.74 36.70 -9 10) T 35/T 34 -0.74 -0.12 3.44 -2.28 -3.28 38.41 -4 11) T 34/T 33 -0.41 -1.01 3.21 -3.98 -0.33 36.27 -4 12) T 33/A 32 -0.38 -0.93 3.22 -3.97 -5.92 35.65 7 13) A 32/A 31 0.09 -0.08 3.35 -1.80 2.69 37.17 4 14) A 31/C 30 -0.05 0.87 3.34 -3.66 -1.38 37.50 9 15) C 30/G 29 0.46 -1.50 3.26 -1.67 -0.11 29.19 5 16) G 29/G 28 -0.36 -1.96 3.44 1.84 4.66 31.49 1 17) G 28/G 27 0.14 -1.43 3.44 0.21 5.09 32.85 1 18) G 27/A 26 -0.15 -1.78 3.53 3.31 9.96 29.19 3 19) A 26/G 25 0.59 -0.35 3.41 2.09 4.25 35.46 2 20) G 25/T 24 -1.01 0.19 3.08 -9.45 4.48 35.65 -9 21) T 24/C 23 -0.40 -0.92 3.69 -0.92 8.30 40.11 -3 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 1/C 2 0.90 -1.04 3.59 7.82 9.35 33.83 -1 3) C 2/T 3 0.06 -1.43 3.92 -1.96 12.61 34.42 -3 4) T 3/G 4 -0.03 -0.35 3.33 -1.08 10.69 35.19 -9 5) G 4/T 5 -0.36 -1.24 3.26 2.28 0.12 27.93 6 6) T 5/G 6 -0.03 0.16 3.48 -0.41 3.65 39.89 -9 7) G 6/A 7 -0.39 -0.71 3.35 -0.55 8.17 28.84 2 8) A 7/C 8 -0.30 -1.00 3.16 -0.90 5.53 29.56 -6 9) C 8/A 9 -0.03 -0.15 3.66 -2.76 7.10 36.14 9 10) A 9/A 10 -0.23 0.04 3.48 -0.24 -3.37 39.79 4 11) A 10/A 11 0.12 -1.04 3.35 -1.28 1.11 38.00 4 12) A 11/T 12 -0.07 -0.89 3.22 0.74 -3.60 34.62 7 13) T 12/T 13 0.37 -0.12 3.23 2.20 3.32 37.16 -4 14) T 13/G 14 0.12 1.06 3.38 0.07 4.71 35.57 -9 15) G 14/C 15 0.41 -1.18 3.16 4.48 1.12 29.93 5 16) C 15/C 16 -0.42 -1.65 3.89 -5.03 12.05 29.79 -1 17) C 16/C 17 0.03 -1.30 3.56 -2.09 4.87 32.93 -1 18) C 17/T 18 -0.13 -1.79 3.57 1.29 6.54 29.92 -3 19) T 18/C 19 0.70 -0.35 3.39 3.25 4.67 35.92 -2 20) C 19/A 20 -0.87 0.20 3.23 -5.09 4.07 35.30 9 21) A 20/G 21 -0.13 -0.68 3.54 0.92 8.21 37.39 3 Average: -0.01 -0.67 3.44 0.08 5.05 34.11 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) C 1/C 2 0.24 -0.07 2.07 3.04 0.25 3.68 3.53 -1 3) C 2/T 3 -0.14 -0.34 -2.81 4.30 0.37 5.14 3.73 -3 4) T 3/G 4 -0.02 0.23 0.23 4.96 0.23 4.96 3.16 -9 5) G 4/T 5 -0.15 -0.40 1.82 -1.53 0.43 2.38 3.23 6 6) T 5/G 6 0.03 0.42 0.82 0.34 0.42 0.89 3.49 -9 7) G 6/A 7 -0.07 -0.17 2.03 2.53 0.18 3.25 3.20 2 8) A 7/C 8 -0.10 -0.29 0.87 1.40 0.31 1.65 3.01 -6 9) C 8/A 9 0.02 0.17 0.54 2.28 0.18 2.34 3.54 9 10) A 9/A 10 -0.02 0.28 3.01 -4.00 0.28 5.01 3.56 4 11) A 10/A 11 0.10 -0.25 1.02 -2.39 0.27 2.60 3.30 4 12) A 11/T 12 -0.15 -0.21 -1.67 -4.64 0.26 4.93 3.22 7 13) T 12/T 13 -0.02 0.17 -2.50 -0.12 0.17 2.50 3.18 -4 14) T 13/G 14 0.03 0.77 0.41 1.97 0.77 2.02 3.53 -9 15) G 14/C 15 0.28 -0.36 5.11 -2.08 0.45 5.52 3.15 5 16) C 15/C 16 -0.23 -0.41 -2.52 5.24 0.47 5.82 3.73 -1 17) C 16/C 17 0.03 -0.08 -0.80 3.47 0.08 3.56 3.47 -1 18) C 17/T 18 -0.08 -0.44 -0.17 3.56 0.45 3.57 3.46 -3 19) T 18/C 19 0.32 0.14 1.39 0.10 0.35 1.40 3.25 -2 20) C 19/A 20 -0.37 0.30 -2.05 -0.77 0.48 2.19 3.34 9 21) A 20/G 21 0.09 -0.09 2.84 1.41 0.13 3.17 3.32 3 Overall axis bend ... UU= 24.02 PP= 28.32 Duplex Offset L.Dir ... wrt end-to-end vector 1) C 1 0.00 0.00 2) C 2 1.03 93.08 3) T 3 2.29 54.94 4) G 4 2.73 22.18 5) T 5 3.51 6.67 6) G 6 4.27 -36.82 7) A 7 4.71 -64.03 8) C 8 4.85 -86.40 9) A 9 5.46 -122.71 10) A 10 5.90 -160.91 11) A 11 6.04 157.80 12) T 12 5.91 121.03 13) T 13 5.40 82.13 14) G 14 4.26 42.89 15) C 15 3.91 18.07 16) C 16 3.83 -1.53 17) C 17 3.18 -32.66 18) T 18 2.19 -55.55 19) C 19 1.46 -105.07 20) A 20 0.78 -117.17 21) G 21 0.00 0.00 Path length= 67.41 End-to-end= 65.66 Shortening= 2.60 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CA 1 25.77 -29.51 175.13 29.93 C2'-endo 106.0 104.3 104.5 2)CA 2 35.73 -35.99 166.76 38.14 C2'-endo 107.0 101.5 102.4 3)TA 3 21.96 -29.02 187.32 29.67 C3'-exo 106.5 104.5 103.7 4)GA 4 29.80 -35.60 179.60 36.28 C2'-endo 106.6 102.0 102.9 5)TA 5 32.03 -37.09 177.44 37.98 C2'-endo 106.9 101.3 102.5 6)GA 6 29.65 -35.88 180.63 36.55 C3'-exo 106.4 102.1 102.7 7)AA 7 23.57 -33.26 192.20 34.64 C3'-exo 106.6 103.2 102.6 8)CA 8 27.75 -35.03 184.32 35.87 C3'-exo 106.9 102.2 102.7 9)AA 9 30.75 -36.26 178.71 37.03 C2'-endo 106.8 101.7 102.9 10)AA 10 30.92 -36.40 178.40 37.14 C2'-endo 106.7 101.6 102.9 11)AA 11 23.81 -33.15 191.92 34.65 C3'-exo 106.9 103.3 101.9 12)TA 12 26.10 -32.66 183.72 33.36 C3'-exo 106.6 103.4 102.6 13)TA 13 30.83 -33.84 172.91 34.86 C2'-endo 106.3 102.5 103.0 14)GA 14 32.29 -36.54 175.67 37.52 C2'-endo 106.7 101.5 102.6 15)CA 15 25.46 -32.77 185.93 33.64 C3'-exo 107.0 103.1 102.9 16)CA 16 29.52 -35.18 179.89 35.94 C2'-endo 106.8 102.2 102.6 17)CA 17 30.26 -35.68 178.88 36.46 C2'-endo 106.9 101.9 102.9 18)TA 18 26.26 -34.35 186.84 35.24 C3'-exo 106.4 102.9 102.6 19)CA 19 29.96 -36.57 181.60 37.36 C3'-exo 106.8 101.7 102.6 20)AA 20 29.40 -36.04 181.42 36.70 C3'-exo 106.5 101.8 103.0 21)GA 21 25.69 -35.00 190.17 36.30 C3'-exo 106.5 103.0 101.8 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CA 1 -138.96 36.90 142.34 -159.93 -117.54 25.92 143.36 2)CA 2 -94.99 -13.68 152.50 -179.24 -134.02 43.93 -172.86 3)TA 3 -127.80 -57.48 151.08 -177.08 -92.57 -59.67 -170.88 4)GA 4 -106.11 49.81 150.44 169.77 -95.55 -49.08 -154.68 5)TA 5 -87.42 29.62 152.19 177.66 -133.42 -50.13 169.94 6)GA 6 -105.14 53.54 151.05 -158.99 -119.03 25.63 -166.58 7)AA 7 -104.50 -60.86 155.35 177.44 -80.79 -45.78 -149.67 8)CA 8 -83.45 2.33 153.06 177.03 -118.86 -45.97 176.51 9)AA 9 -94.06 43.93 150.10 179.87 -130.66 -43.42 164.74 10)AA 10 -101.99 53.38 150.15 -173.79 -122.21 48.77 -173.19 11)AA 11 -111.36 -67.50 156.79 -171.68 -110.25 35.80 -176.62 12)TA 12 -103.09 -62.84 152.71 164.93 -86.40 -57.04 -151.57 13)TA 13 -88.49 33.69 150.83 -167.02 -135.22 -46.04 154.76 14)GA 14 -93.87 52.84 151.29 -163.29 -121.55 40.63 -149.56 15)CA 15 -109.83 -82.40 152.95 -175.71 -84.09 -45.03 -150.93 16)CA 16 -105.64 2.28 153.35 169.44 -97.62 -46.10 -155.86 17)CA 17 -102.60 26.24 153.83 -176.82 -122.18 56.26 -169.21 18)TA 18 -119.31 -75.75 154.58 -172.06 -85.94 -42.17 -165.52 19)CA 19 -87.92 11.85 154.85 -177.86 -138.47 -49.73 169.17 20)AA 20 -100.95 50.99 150.74 -177.89 -62.49 -158.87 93.06 21)GA 21 -135.47 166.67 156.26 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GB 43 29.38 -36.46 183.08 37.28 C3'-exo 106.5 102.2 102.1 2)GB 42 27.87 -34.08 181.95 34.82 C3'-exo 106.7 102.7 102.7 3)AB 41 28.17 -34.61 182.14 35.31 C3'-exo 106.3 102.8 102.4 4)CB 40 27.43 -34.64 183.85 35.31 C3'-exo 106.4 102.6 102.9 5)AB 39 33.04 -36.00 172.31 37.16 C2'-endo 106.6 101.7 102.8 6)CB 38 31.94 -36.90 177.97 37.92 C2'-endo 107.2 101.4 102.2 7)TB 37 27.83 -34.23 182.74 35.05 C3'-exo 106.9 102.7 102.4 8)GB 36 33.16 -38.02 176.11 38.92 C2'-endo 106.6 100.7 103.0 9)TB 35 33.25 -38.38 176.64 39.27 C2'-endo 106.9 100.4 102.9 10)TB 34 25.78 -34.70 188.82 35.75 C3'-exo 106.6 102.6 102.6 11)TB 33 25.26 -34.44 190.41 35.81 C3'-exo 106.7 102.9 101.8 12)AB 32 30.41 -36.37 179.87 37.15 C2'-endo 106.8 101.5 102.7 13)AB 31 31.77 -36.91 177.32 37.71 C2'-endo 106.6 101.4 102.9 14)CB 30 29.68 -34.91 178.83 35.67 C2'-endo 106.5 102.5 102.5 15)GB 29 27.24 -33.81 183.03 34.54 C3'-exo 106.8 102.8 102.8 16)GB 28 32.51 -36.65 175.79 37.74 C2'-endo 107.1 101.3 102.4 17)GB 27 30.80 -34.72 175.05 35.55 C2'-endo 106.4 102.6 102.8 18)AB 26 33.68 -37.06 173.18 38.22 C2'-endo 106.6 101.2 102.6 19)GB 25 39.02 -40.27 168.20 42.44 C2'-endo 107.4 98.8 102.7 20)TB 24 28.65 -33.73 178.28 34.35 C2'-endo 106.5 102.7 103.3 21)CB 23 27.42 -34.01 182.11 34.52 C3'-exo 106.1 103.0 103.3 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GB 43 -111.30 43.82 157.66 ...... ...... ...... ...... 2)GB 42 -116.89 -67.69 155.29 167.58 -97.55 -64.13 -150.07 3)AB 41 -122.08 163.42 150.94 -155.36 -103.20 23.35 -171.58 4)CB 40 -130.16 -86.64 152.04 -167.33 -74.20 161.75 146.44 5)AB 39 -104.09 36.35 149.45 -149.97 -103.98 22.42 -112.76 6)CB 38 -83.80 -10.31 154.55 178.40 -152.02 -19.87 148.55 7)TB 37 -102.99 -63.57 154.06 -172.59 -91.65 -20.96 -165.28 8)GB 36 -86.05 40.81 150.27 -178.70 -130.46 46.09 -172.13 9)TB 35 -93.15 56.58 152.24 -171.95 -116.37 -60.07 -175.93 10)TB 34 -103.16 -66.25 155.65 171.76 -95.92 -64.52 -175.42 11)TB 33 -121.90 -83.87 155.43 -173.58 -107.36 47.35 171.68 12)AB 32 -96.10 51.48 150.77 -153.78 -120.06 29.92 -129.09 13)AB 31 -99.73 54.92 151.74 -174.25 -122.28 -57.09 176.81 14)CB 30 -98.40 16.03 152.50 -165.03 -137.51 -49.01 154.49 15)GB 29 -122.29 -64.38 153.95 174.01 -84.25 -51.73 -144.46 16)GB 28 -99.20 40.00 154.15 -177.27 -116.08 37.66 -158.31 17)GB 27 -124.66 -80.05 153.36 170.98 -89.64 -68.90 -145.06 18)AB 26 -96.82 28.10 148.22 -161.88 -114.31 30.36 -150.92 19)GB 25 -81.38 44.53 157.74 -123.69 -177.87 -56.77 156.06 20)TB 24 -130.01 178.87 147.68 -158.23 -85.92 -66.07 173.58 21)CB 23 -129.63 51.91 150.86 -174.59 -90.12 154.22 164.09