ID code: 1JEY, PD0220 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 24 Apr 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) GA 1 0.017 1 : 2) TA 2 0.017 1 : 3) TA 3 0.018 1 : 4) TA 4 0.020 1 : 5) TA 5 0.017 1 : 6) TA 6 0.017 1 : 7) AA 7 0.019 1 : 8) GA 8 0.014 1 : 9) TA 9 0.023 1 : 10) TA 10 0.016 1 : 11) TA 11 0.027 1 : 12) AA 12 0.016 1 : 13) TA 13 0.018 1 : 14) TA 14 0.019 2 : 1) CB 34 0.010 2 : 2) AB 33 0.018 2 : 3) AB 32 0.014 2 : 4) AB 31 0.014 2 : 5) AB 30 0.014 2 : 6) AB 29 0.016 2 : 7) TB 28 0.019 2 : 8) CB 27 0.010 2 : 9) AB 26 0.014 2 : 10) AB 25 0.019 2 : 11) AB 24 0.020 2 : 12) TB 23 0.019 2 : 13) AB 22 0.022 2 : 14) AB 21 0.020 Strand= 2 Nucleo= 28 Atoms = 571 Units = 28 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 14 levels ... Strand 1 has 14 bases (5'-3'): GTTTTTAGTTTATT Strand 2 has 14 bases (3'-5'): CAAAAATCAAATAA FIRST SUM= 53.787 CPTS: 11.873 4.579 12.264 25.072 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 56 STEP 1 SUM= 53.787 DEL= 0.000E+00 STEP 2 SUM= 42.782 DEL= -0.110E+02 STEP 3 SUM= 62.289 DEL= 0.195E+02 STEP 4 SUM= 39.864 DEL= -0.224E+02 STEP 5 SUM= 36.046 DEL= -0.382E+01 STEP 6 SUM= 31.591 DEL= -0.445E+01 STEP 7 SUM= 27.558 DEL= -0.403E+01 STEP 8 SUM= 27.120 DEL= -0.437E+00 STEP 9 SUM= 25.424 DEL= -0.170E+01 STEP 10 SUM= 29.887 DEL= 0.446E+01 STEP 11 SUM= 24.902 DEL= -0.498E+01 STEP 12 SUM= 24.069 DEL= -0.833E+00 STEP 13 SUM= 22.862 DEL= -0.121E+01 STEP 14 SUM= 22.554 DEL= -0.308E+00 STEP 15 SUM= 22.049 DEL= -0.505E+00 STEP 16 SUM= 21.443 DEL= -0.606E+00 STEP 17 SUM= 20.704 DEL= -0.739E+00 STEP 18 SUM= 20.561 DEL= -0.143E+00 STEP 19 SUM= 20.295 DEL= -0.266E+00 STEP 20 SUM= 19.939 DEL= -0.356E+00 STEP 21 SUM= 19.824 DEL= -0.115E+00 STEP 22 SUM= 19.631 DEL= -0.193E+00 STEP 23 SUM= 19.663 DEL= 0.316E-01 STEP 24 SUM= 19.542 DEL= -0.121E+00 STEP 25 SUM= 19.392 DEL= -0.150E+00 STEP 26 SUM= 19.229 DEL= -0.163E+00 STEP 27 SUM= 19.060 DEL= -0.169E+00 STEP 28 SUM= 19.727 DEL= 0.667E+00 STEP 29 SUM= 19.031 DEL= -0.696E+00 STEP 30 SUM= 18.994 DEL= -0.377E-01 STEP 31 SUM= 18.931 DEL= -0.631E-01 STEP 32 SUM= 18.840 DEL= -0.909E-01 STEP 33 SUM= 19.194 DEL= 0.354E+00 STEP 34 SUM= 18.824 DEL= -0.370E+00 STEP 35 SUM= 18.797 DEL= -0.274E-01 STEP 36 SUM= 18.755 DEL= -0.413E-01 STEP 37 SUM= 18.721 DEL= -0.342E-01 STEP 38 SUM= 18.675 DEL= -0.467E-01 STEP 39 SUM= 18.672 DEL= -0.220E-02 STEP 40 SUM= 18.651 DEL= -0.217E-01 STEP 41 SUM= 18.615 DEL= -0.355E-01 STEP 42 SUM= 18.576 DEL= -0.392E-01 STEP 43 SUM= 18.556 DEL= -0.201E-01 STEP 44 SUM= 18.534 DEL= -0.214E-01 STEP 45 SUM= 18.530 DEL= -0.443E-02 STEP 46 SUM= 18.524 DEL= -0.609E-02 STEP 47 SUM= 18.522 DEL= -0.162E-02 STEP 48 SUM= 18.520 DEL= -0.205E-02 STEP 49 SUM= 18.520 DEL= -0.683E-03 STEP 50 SUM= 18.519 DEL= -0.771E-03 STEP 51 SUM= 18.519 DEL= -0.135E-03 STEP 52 SUM= 18.518 DEL= -0.211E-03 STEP 53 SUM= 18.518 DEL= -0.110E-04 STEP 54 SUM= 18.518 DEL= -0.925E-04 STEP 55 SUM= 18.518 DEL= -0.225E-04 STEP 56 SUM= 18.518 DEL= -0.192E-04 STEP 57 SUM= 18.518 DEL= 0.384E-05 STEP 58 SUM= 18.518 DEL= -0.551E-05 STEP 59 SUM= 18.518 DEL= -0.806E-06 STEP 60 SUM= 18.518 DEL= -0.933E-06 STEP 61 SUM= 18.518 DEL= -0.610E-06 STEP 62 SUM= 18.518 DEL= -0.144E-06 STEP 63 SUM= 18.518 DEL= -0.196E-06 STEP 64 SUM= 18.518 DEL= -0.179E-07 STEP 65 SUM= 18.518 DEL= -0.323E-07 STEP 66 SUM= 18.518 DEL= -0.119E-07 STEP 67 SUM= 18.518 DEL= -0.101E-07 STEP 68 SUM= 18.518 DEL= -0.747E-09 STEP 69 SUM= 18.518 DEL= -0.128E-08 STEP 70 SUM= 18.518 DEL= -0.133E-08 STEP 71 SUM= 18.518 DEL= -0.412E-09 STEP 72 SUM= 18.518 DEL= -0.565E-09 STEP 73 SUM= 18.518 DEL= -0.261E-10 STEP 74 SUM= 18.518 DEL= -0.130E-09 STEP 75 SUM= 18.518 DEL= -0.364E-10 STEP 76 SUM= 18.518 DEL= 0.689E-12 STEP 77 SUM= 18.518 DEL= -0.135E-10 STEP 78 SUM= 18.518 DEL= -0.476E-11 STEP 79 SUM= 18.518 DEL= -0.480E-12 STEP 80 SUM= 18.518 DEL= -0.284E-13 STEP 81 SUM= 18.518 DEL= -0.355E-14 STEP 82 SUM= 18.518 DEL= 0.000E+00 FINAL SUM= 18.518 CPTS: 7.335 6.858 1.191 3.134 GRA= 0.26E-09-0.19E-09 0.13E-08 0.46E-09 0.20E-09 0.56E-09-0.40E-09-0.25E-09 GRA= 0.14E-09-0.83E-09-0.67E-09 0.10E-09 0.31E-09 0.13E-08-0.60E-10 0.22E-09 GRA=-0.26E-09-0.97E-09 0.95E-09-0.39E-09 0.66E-09-0.12E-08 0.15E-09 0.35E-11 GRA= 0.25E-09 0.80E-10-0.74E-09 0.13E-08-0.86E-09 0.53E-09-0.51E-10 0.84E-09 GRA= 0.70E-09-0.11E-08 0.76E-10-0.10E-09 0.47E-09 0.58E-09-0.42E-09-0.70E-09 GRA= 0.95E-10-0.78E-09-0.49E-09-0.13E-09 0.37E-09-0.13E-09 0.97E-09 0.76E-09 GRA=-0.99E-09 0.94E-09 0.18E-09-0.79E-10-0.23E-10-0.46E-09-0.84E-09-0.23E-09 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.412 -0.748 -0.520 P: 5.733 39.238 33.399 D: 2.406 2) U: 0.459 -0.716 -0.526 P: 7.093 37.032 32.032 D: 0.657 3) U: 0.426 -0.728 -0.537 P: 8.601 34.912 30.079 D: 1.064 4) U: 0.482 -0.678 -0.555 P: 10.034 32.193 28.345 D: 1.007 5) U: 0.479 -0.645 -0.596 P: 11.369 30.555 26.695 D: 0.644 6) U: 0.497 -0.618 -0.608 P: 12.914 28.723 25.014 D: 2.646 7) U: 0.514 -0.655 -0.554 P: 14.627 26.098 22.498 D: 1.008 8) U: 0.560 -0.660 -0.500 P: 16.559 23.811 21.111 D: 1.572 9) U: 0.631 -0.654 -0.418 P: 19.051 21.491 19.628 D: 1.726 10) U: 0.563 -0.696 -0.445 P: 21.694 19.051 18.273 D: 1.710 11) U: 0.566 -0.730 -0.382 P: 23.183 17.190 16.853 D: 0.723 12) U: 0.575 -0.747 -0.334 P: 25.118 14.961 15.407 D: 2.793 13) U: 0.557 -0.781 -0.284 P: 26.818 12.424 14.969 D: 0.562 14) U: 0.563 -0.751 -0.346 P: 28.580 10.097 13.748 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GA 1 0.12 -0.01 -3.29 2.73 1 0 2) TA 2 0.19 -0.10 6.04 -11.11 4 -23 3) TA 3 0.25 -0.13 6.15 -6.04 4 -20 4) TA 4 -0.32 -0.09 2.12 -2.69 4 -20 5) TA 5 -0.35 -0.30 11.91 -2.59 4 -20 6) TA 6 -0.24 -0.19 20.86 -2.64 4 -28 7) AA 7 -0.56 -0.03 7.38 -5.50 2 27 8) GA 8 -0.54 -0.18 -1.60 0.55 1 8 9) TA 9 -0.76 -0.64 -4.60 2.13 4 -23 10) TA 10 -0.85 -0.86 -10.39 8.11 4 -20 11) TA 11 -0.57 -0.67 1.80 13.00 4 -28 12) AA 12 -0.31 -0.39 4.37 8.20 2 32 13) TA 13 -1.02 -0.43 11.65 -8.00 4 -24 14) TA 14 -0.86 -0.68 7.95 -8.92 4 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CB 34 0.29 -0.12 14.48 -5.23 3 0 2) AB 33 0.03 -0.12 1.05 -11.10 2 23 3) AB 32 0.24 -0.09 5.79 -3.88 2 20 4) AB 31 -0.15 0.16 6.08 -5.75 2 20 5) AB 30 -0.16 0.34 -2.82 -0.87 2 20 6) AB 29 -0.15 0.26 -12.77 -2.02 2 28 7) TB 28 -0.74 0.20 -11.75 -6.01 4 -27 8) CB 27 -0.49 0.41 -15.88 -2.97 3 -8 9) AB 26 -0.56 0.49 -8.69 -10.28 2 23 10) AB 25 -0.82 1.04 -0.28 -13.79 2 20 11) AB 24 -0.52 0.85 -1.33 -2.64 2 28 12) TB 23 -0.49 0.50 -2.22 -4.22 4 -32 13) AB 22 -1.00 0.63 -4.04 -14.05 2 24 14) AB 21 -0.80 0.80 1.79 -17.58 2 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) G 1-C 34 0.21 0.05 5.60 3.98 1 0 2) T 2-A 33 0.11 0.01 3.55 -0.01 4 -23 3) T 3-A 32 0.24 -0.02 5.97 -1.08 4 -20 4) T 4-A 31 -0.24 -0.12 4.10 1.53 4 -20 5) T 5-A 30 -0.26 -0.32 4.54 -0.86 4 -20 6) T 6-A 29 -0.20 -0.22 4.04 -0.31 4 -28 7) A 7-T 28 -0.65 -0.12 -2.19 0.26 2 27 8) G 8-C 27 -0.51 -0.29 -8.74 1.76 1 8 9) T 9-A 26 -0.66 -0.56 -6.64 6.20 4 -23 10) T 10-A 25 -0.83 -0.95 -5.33 10.95 4 -20 11) T 11-A 24 -0.55 -0.76 0.23 7.82 4 -28 12) A 12-T 23 -0.40 -0.44 1.07 6.21 2 32 13) T 13-A 22 -1.01 -0.53 3.81 3.02 4 -24 14) T 14-A 21 -0.83 -0.74 4.87 4.33 4 0 Average: -0.40 -0.36 1.06 3.13 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) G 1-C 34 -0.18 -0.14 -1.92 -17.78 -2.49 4.79 1 0 2) T 2-A 33 0.16 -0.22 -0.74 4.98 -22.20 10.76 4 -23 3) T 3-A 32 0.02 -0.22 -1.04 0.36 -9.92 10.93 4 -20 4) T 4-A 31 -0.18 0.07 -0.63 -3.97 -8.44 3.13 4 -20 5) T 5-A 30 -0.20 0.04 -1.21 14.73 -3.46 2.39 4 -20 6) T 6-A 29 -0.09 0.06 -1.50 33.64 -4.66 4.52 4 -28 7) A 7-T 28 0.18 0.18 -0.02 19.13 -11.51 -0.47 2 27 8) G 8-C 27 -0.05 0.23 0.27 14.28 -2.42 4.99 1 8 9) T 9-A 26 -0.21 -0.16 -0.63 4.09 -8.15 5.36 4 -23 10) T 10-A 25 -0.03 0.18 0.27 -10.12 -5.68 -3.32 4 -20 11) T 11-A 24 -0.05 0.17 -0.43 3.13 10.36 -10.42 4 -28 12) A 12-T 23 0.18 0.11 -0.11 6.59 3.98 -3.71 2 32 13) T 13-A 22 -0.02 0.20 -0.68 15.69 -22.05 -7.41 4 -24 14) T 14-A 21 -0.06 0.12 -0.40 6.16 -26.49 -3.38 4 0 Average: -0.04 0.05 -0.63 6.49 -8.08 1.30 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 1/T 2 -0.12 -0.13 3.51 6.25 -14.93 42.40 6 3) T 2/T 3 0.37 0.07 3.09 2.21 5.30 42.86 -4 4) T 3/T 4 -0.93 0.06 3.72 -5.61 7.46 29.20 -4 5) T 4/T 5 0.09 -0.34 2.39 12.64 1.13 35.20 -4 6) T 5/T 6 0.25 0.13 2.78 10.71 0.87 34.84 -4 7) T 6/A 7 -0.62 0.37 4.74 -15.18 0.61 37.44 10 8) A 7/G 8 0.38 -0.34 3.42 -5.89 8.76 40.11 3 9) G 8/T 9 -0.33 -0.83 3.25 3.20 1.88 28.49 6 10) T 9/T 10 -0.42 -0.57 4.27 -7.83 10.37 28.91 -4 11) T 10/T 11 0.41 0.46 2.41 16.23 4.01 28.93 -4 12) T 11/A 12 0.44 0.57 3.43 4.06 -7.39 41.80 10 13) A 12/T 13 -1.24 -0.13 2.75 8.94 -19.41 27.57 7 14) T 13/T 14 0.37 -0.37 3.30 -2.24 2.76 41.34 -4 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 34/A 33 -0.46 0.05 2.34 -16.51 -4.78 36.43 -6 3) A 33/A 32 0.52 -0.07 3.39 6.83 6.98 42.69 4 4) A 32/A 31 -0.73 0.23 3.31 -1.28 -5.97 37.01 4 5) A 31/A 30 0.11 0.31 2.96 -6.06 3.84 35.94 4 6) A 30/A 29 0.15 -0.11 3.07 -8.20 -2.07 32.71 4 7) A 29/T 28 -0.90 -0.26 3.27 -0.67 -7.45 42.43 10 8) T 28/C 27 0.61 0.39 3.13 -1.05 0.32 34.65 -3 9) C 27/A 26 -0.17 0.44 4.15 13.39 -7.61 28.11 -6 10) A 26/A 25 -0.60 0.91 3.37 6.38 -7.90 37.59 4 11) A 25/A 24 0.43 -0.48 3.11 2.98 12.02 36.04 4 12) A 24/T 23 0.22 -0.63 3.11 0.60 1.01 35.09 10 13) T 23/A 22 -1.05 0.21 3.32 -0.16 -6.63 31.28 7 14) A 22/A 21 0.41 0.29 3.01 7.29 -7.20 37.30 4 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 1/T 2 -0.29 -0.09 2.92 -5.13 -5.07 39.41 6 3) T 2/T 3 0.45 0.07 3.24 4.52 -0.84 42.78 -4 4) T 3/T 4 -0.83 -0.09 3.51 -3.44 6.72 33.10 -4 5) T 4/T 5 0.10 -0.33 2.68 3.29 -1.36 35.57 -4 6) T 5/T 6 0.20 0.12 2.92 1.26 1.47 33.78 -4 7) T 6/A 7 -0.76 0.31 4.00 -7.93 4.03 39.93 10 8) A 7/G 8 0.49 -0.37 3.28 -3.47 4.22 37.38 3 9) G 8/T 9 -0.25 -0.64 3.70 8.29 4.74 28.30 6 10) T 9/T 10 -0.51 -0.74 3.82 -0.72 9.13 33.25 -4 11) T 10/T 11 0.42 0.47 2.76 9.60 -4.01 32.48 -4 12) T 11/A 12 0.33 0.60 3.27 2.33 -4.20 38.44 10 13) A 12/T 13 -1.15 -0.17 3.04 4.39 -6.39 29.43 7 14) T 13/T 14 0.39 -0.33 3.16 2.52 4.98 39.32 -4 Average: -0.11 -0.09 3.25 1.19 1.03 35.63 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 1/T 2 0.06 0.19 3.54 8.67 -12.73 42.23 6 3) T 2/T 3 0.88 0.47 2.98 8.46 9.18 42.01 -4 4) T 3/T 4 -0.57 0.28 3.79 -3.05 9.51 29.23 -4 5) T 4/T 5 0.24 -0.24 2.44 13.80 5.24 34.46 -4 6) T 5/T 6 0.44 0.71 2.70 11.91 10.42 32.92 -4 7) T 6/A 7 -0.07 1.24 4.68 -11.96 9.63 36.67 10 8) A 7/G 8 0.68 -0.62 3.44 -3.63 10.30 40.28 3 9) G 8/T 9 -0.19 -1.29 3.13 2.64 0.03 28.48 6 10) T 9/T 10 -0.36 -1.56 4.18 -10.19 6.39 28.57 -4 11) T 10/T 11 0.27 -0.08 2.47 10.36 1.90 31.42 -4 12) T 11/A 12 0.17 0.47 3.46 -3.56 -4.76 41.97 10 13) A 12/T 13 -1.06 -0.01 2.76 8.98 -14.92 28.08 7 14) T 13/T 14 1.25 -0.44 3.32 3.64 9.72 40.06 -4 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C 34/A 33 -0.76 0.33 2.29 -20.85 8.93 34.22 -6 3) A 33/A 32 -0.05 0.45 3.39 1.00 -3.79 43.12 4 4) A 32/A 31 -0.92 0.11 3.26 -4.57 9.51 36.23 4 5) A 31/A 30 0.19 -0.30 2.98 -7.69 -2.52 35.57 4 6) A 30/A 29 0.33 -0.40 3.04 -8.63 -2.31 32.42 4 7) A 29/T 28 -0.89 -0.75 3.16 -3.69 -1.73 42.03 10 8) T 28/C 27 0.59 -1.41 2.96 -3.57 -8.35 34.22 -3 9) C 27/A 26 -0.43 -1.60 3.83 9.90 1.69 29.03 -6 10) A 26/A 25 -0.81 -1.60 3.21 -1.98 4.79 38.28 4 11) A 25/A 24 0.60 0.09 3.16 -2.15 -12.21 36.28 4 12) A 24/T 23 0.46 0.19 3.11 -1.58 -2.24 34.94 10 13) T 23/A 22 -1.21 -0.84 3.07 -5.12 4.50 30.64 7 14) A 22/A 21 0.00 -0.96 3.15 -3.13 6.21 38.01 4 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G 1/T 2 -0.38 0.31 2.90 -5.37 -0.88 38.53 6 3) T 2/T 3 0.44 0.50 3.21 4.09 3.06 43.02 -4 4) T 3/T 4 -0.77 0.21 3.52 -3.82 9.54 32.82 -4 5) T 4/T 5 0.22 -0.26 2.70 2.96 1.63 35.04 -4 6) T 5/T 6 0.37 0.19 2.92 1.40 4.48 33.18 -4 7) T 6/A 7 -0.56 0.08 4.05 -7.91 3.87 39.65 10 8) A 7/G 8 0.62 -1.03 3.21 -3.79 0.95 38.21 3 9) G 8/T 9 -0.29 -1.41 3.49 6.32 0.71 28.65 6 10) T 9/T 10 -0.62 -1.57 3.70 -6.11 5.59 33.43 -4 11) T 10/T 11 0.41 0.00 2.81 4.57 -5.55 33.60 -4 12) T 11/A 12 0.34 0.33 3.29 -2.64 -3.44 38.42 10 13) A 12/T 13 -1.10 -0.40 2.93 1.47 -5.55 28.11 7 14) T 13/T 14 0.62 -0.74 3.29 0.33 7.87 39.94 -4 Average: -0.05 -0.29 3.23 -0.65 1.71 35.59 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) G 1/T 2 -0.19 -0.05 -3.08 -1.09 0.20 3.27 2.93 6 3) T 2/T 3 0.31 0.10 2.09 0.24 0.33 2.11 3.25 -4 4) T 3/T 4 -0.35 0.02 -1.57 4.10 0.35 4.40 3.53 -4 5) T 4/T 5 0.12 -0.13 2.85 1.03 0.18 3.03 2.68 -4 6) T 5/T 6 0.14 0.02 1.76 0.92 0.14 1.98 2.93 -4 7) T 6/A 7 -0.31 0.21 -1.69 3.46 0.37 3.85 4.02 10 8) A 7/G 8 0.36 -0.19 3.09 2.72 0.40 4.11 3.30 3 9) G 8/T 9 -0.10 -0.36 6.19 0.30 0.38 6.20 3.71 6 10) T 9/T 10 -0.34 -0.35 -2.03 4.38 0.49 4.83 3.84 -4 11) T 10/T 11 0.13 0.28 4.03 -0.87 0.31 4.13 2.78 -4 12) T 11/A 12 0.19 0.28 1.49 -2.59 0.34 2.99 3.29 10 13) A 12/T 13 -0.54 -0.08 1.65 -3.21 0.55 3.61 3.08 7 14) T 13/T 14 0.21 -0.12 1.46 3.67 0.24 3.95 3.16 -4 Overall axis bend ... UU= 13.24 PP= 7.12 Duplex Offset L.Dir ... wrt end-to-end vector 1) G 1 0.00 0.00 2) T 2 0.29 88.36 3) T 3 0.65 96.05 4) T 4 1.15 48.85 5) T 5 1.43 30.55 6) T 6 1.67 5.96 7) A 7 2.47 -28.39 8) G 8 2.26 -68.23 9) T 9 1.83 -85.76 10) T 10 1.30 -95.04 11) T 11 1.44 -123.53 12) A 12 1.36 -158.82 13) T 13 0.29 171.40 14) T 14 0.00 0.00 Path length= 42.51 End-to-end= 41.92 Shortening= 1.38 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GA 1 33.56 -33.22 163.69 35.42 C2'-endo 105.9 102.4 103.1 2)TA 2 33.54 -32.64 162.20 35.09 C2'-endo 106.0 102.4 103.3 3)TA 3 30.88 -32.80 169.70 34.01 C2'-endo 106.0 102.9 103.0 4)TA 4 37.78 -32.72 151.37 38.13 C2'-endo 104.9 101.7 103.4 5)TA 5 37.26 -30.68 147.26 37.33 C2'-endo 104.6 102.4 103.4 6)TA 6 37.49 -32.68 152.05 37.85 C2'-endo 104.9 101.9 103.4 7)AA 7 34.06 -31.90 158.19 35.07 C2'-endo 105.6 102.5 103.6 8)GA 8 33.50 -32.34 161.28 34.93 C2'-endo 105.9 102.4 103.4 9)TA 9 22.79 -30.04 187.49 30.89 C3'-exo 106.9 103.7 103.2 10)TA 10 36.52 -33.55 156.87 37.36 C2'-endo 105.5 101.7 103.4 11)TA 11 44.39 -35.89 146.63 44.26 C2'-endo 104.2 100.2 102.8 12)AA 12 35.39 -33.55 159.30 36.58 C2'-endo 105.3 102.3 103.4 13)TA 13 36.11 -29.07 145.26 36.20 C2'-endo 105.0 102.5 104.0 14)TA 14 31.16 -27.76 153.78 31.60 C2'-endo 105.8 103.5 104.0 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GA 1 -137.82 178.52 143.97 -149.67 -114.32 -66.76 169.62 2)TA 2 -100.18 55.20 141.98 -176.51 -115.66 -54.19 173.53 3)TA 3 -94.95 51.11 145.62 -152.23 -130.58 -64.50 146.54 4)TA 4 -116.79 65.59 135.70 -150.37 -117.41 -54.96 159.75 5)TA 5 -94.60 37.13 131.65 -155.06 -136.76 -39.24 147.25 6)TA 6 -89.62 38.64 136.76 -129.10 -165.10 -49.97 134.31 7)AA 7 -109.11 48.35 137.71 -179.37 -101.56 -60.85 -175.77 8)GA 8 -109.09 44.64 141.02 -149.61 -110.28 23.83 -124.98 9)TA 9 -128.95 -83.53 147.54 172.96 -68.55 -87.63 -147.37 10)TA 10 -107.71 40.34 141.32 -151.92 -138.37 -32.36 135.62 11)TA 11 -99.65 34.84 137.35 -141.19 178.84 -41.63 125.49 12)AA 12 -124.09 49.37 142.48 -142.08 -178.44 2.97 108.29 13)TA 13 -102.24 22.23 128.94 179.31 -105.51 -41.34 178.45 14)TA 14 -102.68 35.53 133.11 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CB 34 37.62 -35.79 160.54 38.98 C2'-endo 105.6 101.3 102.7 2)AB 33 31.58 -30.64 161.57 32.98 C2'-endo 106.1 103.0 103.7 3)AB 32 40.03 -35.33 153.56 40.49 C2'-endo 105.0 100.9 103.0 4)AB 31 31.22 -29.81 160.17 32.39 C2'-endo 106.1 103.0 103.8 5)AB 30 38.12 -34.75 156.03 38.90 C2'-endo 105.1 101.5 103.4 6)AB 29 37.28 -35.60 160.17 38.71 C2'-endo 105.4 101.3 103.2 7)TB 28 37.12 -31.10 148.53 37.29 C2'-endo 104.9 102.2 103.9 8)CB 27 40.66 -33.66 148.22 40.74 C2'-endo 105.1 100.7 103.5 9)AB 26 23.63 -30.20 185.41 30.97 C3'-exo 107.2 103.6 103.3 10)AB 25 34.90 -32.49 157.90 35.85 C2'-endo 105.6 102.3 103.5 11)AB 24 38.57 -34.75 155.17 39.22 C2'-endo 105.0 101.4 103.1 12)TB 23 40.69 -33.23 146.98 40.72 C2'-endo 104.6 101.0 103.4 13)AB 22 27.89 -28.46 166.12 29.91 C2'-endo 106.2 103.9 103.7 14)AB 21 35.53 -32.00 154.93 36.17 C2'-endo 105.6 101.9 103.7 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CB 34 -82.71 51.57 149.30 ...... ...... ...... ...... 2)AB 33 -116.58 48.54 139.87 -166.47 -94.55 -72.38 178.56 3)AB 32 -105.78 54.46 139.45 -146.78 -157.07 -50.64 144.63 4)AB 31 -103.23 40.44 138.28 -163.54 -110.24 -55.26 158.73 5)AB 30 -99.70 44.76 140.09 -175.03 -141.97 -30.97 158.08 6)AB 29 -109.30 47.55 142.33 -158.70 -130.59 -51.94 161.77 7)TB 28 -118.17 45.06 134.26 -175.99 -108.79 -50.05 172.33 8)CB 27 -125.39 37.77 135.63 -160.02 -131.32 -49.56 163.29 9)AB 26 -112.56 -62.21 148.45 174.87 -87.20 -44.15 175.99 10)AB 25 -116.34 48.83 138.25 -179.54 -114.28 50.75 173.98 11)AB 24 -112.67 42.80 140.27 -147.19 -157.61 -46.23 141.68 12)TB 23 -104.70 35.49 135.43 -136.62 -169.80 -41.40 131.29 13)AB 22 -101.32 42.55 137.09 173.67 -87.56 -42.25 176.40 14)AB 21 -120.40 26.86 138.24 179.49 -98.12 -72.10 -157.00