ID code: 1J47, 1J47 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 18 Apr 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) CA 101 0.007 1 : 2) CA 102 0.017 1 : 3) TA 103 0.009 1 : 4) GA 104 0.026 1 : 5) CA 105 0.007 1 : 6) AA 106 0.017 1 : 7) CA 107 0.020 1 : 8) AA 108 0.015 1 : 9) AA 109 0.012 1 : 10) AA 110 0.017 1 : 11) CA 111 0.022 1 : 12) AA 112 0.018 1 : 13) CA 113 0.019 1 : 14) CA 114 0.025 2 : 1) GB 128 0.017 2 : 2) GB 127 0.012 2 : 3) AB 126 0.012 2 : 4) CB 125 0.014 2 : 5) GB 124 0.013 2 : 6) TB 123 0.015 2 : 7) GB 122 0.023 2 : 8) TB 121 0.027 2 : 9) TB 120 0.019 2 : 10) TB 119 0.013 2 : 11) GB 118 0.017 2 : 12) TB 117 0.025 2 : 13) GB 116 0.014 2 : 14) GB 115 0.011 Strand= 2 Nucleo= 28 Atoms = 568 Units = 28 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 14 levels ... Strand 1 has 14 bases (5'-3'): CCTGCACAAACACC Strand 2 has 14 bases (3'-5'): GGACGTGTTTGTGG FIRST SUM= 40.915 CPTS: 12.401 1.512 14.435 12.567 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 56 STEP 1 SUM= 40.915 DEL= 0.000E+00 STEP 2 SUM= 38.463 DEL= -0.245E+01 STEP 3 SUM= 35.407 DEL= -0.306E+01 STEP 4 SUM= 31.847 DEL= -0.356E+01 STEP 5 SUM= 27.085 DEL= -0.476E+01 STEP 6 SUM= 23.690 DEL= -0.340E+01 STEP 7 SUM= 25.100 DEL= 0.141E+01 STEP 8 SUM= 22.284 DEL= -0.282E+01 STEP 9 SUM= 22.802 DEL= 0.519E+00 STEP 10 SUM= 21.690 DEL= -0.111E+01 STEP 11 SUM= 20.893 DEL= -0.797E+00 STEP 12 SUM= 20.045 DEL= -0.849E+00 STEP 13 SUM= 19.150 DEL= -0.895E+00 STEP 14 SUM= 18.005 DEL= -0.114E+01 STEP 15 SUM= 17.273 DEL= -0.732E+00 STEP 16 SUM= 17.108 DEL= -0.165E+00 STEP 17 SUM= 16.813 DEL= -0.296E+00 STEP 18 SUM= 16.303 DEL= -0.509E+00 STEP 19 SUM= 15.869 DEL= -0.434E+00 STEP 20 SUM= 15.169 DEL= -0.700E+00 STEP 21 SUM= 14.675 DEL= -0.493E+00 STEP 22 SUM= 15.387 DEL= 0.711E+00 STEP 23 SUM= 14.532 DEL= -0.855E+00 STEP 24 SUM= 14.287 DEL= -0.245E+00 STEP 25 SUM= 14.043 DEL= -0.245E+00 STEP 26 SUM= 13.346 DEL= -0.697E+00 STEP 27 SUM= 14.146 DEL= 0.800E+00 STEP 28 SUM= 13.125 DEL= -0.102E+01 STEP 29 SUM= 12.997 DEL= -0.128E+00 STEP 30 SUM= 12.822 DEL= -0.175E+00 STEP 31 SUM= 12.596 DEL= -0.226E+00 STEP 32 SUM= 12.262 DEL= -0.334E+00 STEP 33 SUM= 12.647 DEL= 0.385E+00 STEP 34 SUM= 12.156 DEL= -0.491E+00 STEP 35 SUM= 12.031 DEL= -0.126E+00 STEP 36 SUM= 11.828 DEL= -0.203E+00 STEP 37 SUM= 11.607 DEL= -0.221E+00 STEP 38 SUM= 12.097 DEL= 0.490E+00 STEP 39 SUM= 11.554 DEL= -0.543E+00 STEP 40 SUM= 11.459 DEL= -0.951E-01 STEP 41 SUM= 11.279 DEL= -0.180E+00 STEP 42 SUM= 11.272 DEL= -0.668E-02 STEP 43 SUM= 11.139 DEL= -0.133E+00 STEP 44 SUM= 11.137 DEL= -0.190E-02 STEP 45 SUM= 11.069 DEL= -0.686E-01 STEP 46 SUM= 11.096 DEL= 0.273E-01 STEP 47 SUM= 11.039 DEL= -0.569E-01 STEP 48 SUM= 11.010 DEL= -0.288E-01 STEP 49 SUM= 11.005 DEL= -0.495E-02 STEP 50 SUM= 10.994 DEL= -0.108E-01 STEP 51 SUM= 10.997 DEL= 0.298E-02 STEP 52 SUM= 10.987 DEL= -0.102E-01 STEP 53 SUM= 10.986 DEL= -0.895E-03 STEP 54 SUM= 10.983 DEL= -0.296E-02 STEP 55 SUM= 10.984 DEL= 0.122E-02 STEP 56 SUM= 10.982 DEL= -0.288E-02 STEP 57 SUM= 10.983 DEL= 0.137E-02 STEP 58 SUM= 10.981 DEL= -0.196E-02 STEP 59 SUM= 10.981 DEL= 0.450E-03 STEP 60 SUM= 10.981 DEL= -0.663E-03 STEP 61 SUM= 10.981 DEL= 0.350E-03 STEP 62 SUM= 10.981 DEL= -0.374E-03 STEP 63 SUM= 10.981 DEL= -0.318E-04 STEP 64 SUM= 10.981 DEL= 0.108E-03 STEP 65 SUM= 10.981 DEL= -0.113E-03 STEP 66 SUM= 10.981 DEL= -0.257E-05 STEP 67 SUM= 10.981 DEL= -0.325E-05 STEP 68 SUM= 10.981 DEL= -0.539E-06 STEP 69 SUM= 10.981 DEL= -0.123E-05 STEP 70 SUM= 10.981 DEL= 0.253E-05 STEP 71 SUM= 10.981 DEL= -0.305E-05 STEP 72 SUM= 10.981 DEL= -0.630E-06 STEP 73 SUM= 10.981 DEL= 0.341E-06 STEP 74 SUM= 10.981 DEL= -0.589E-06 STEP 75 SUM= 10.981 DEL= 0.245E-06 STEP 76 SUM= 10.981 DEL= -0.328E-06 STEP 77 SUM= 10.981 DEL= -0.859E-07 STEP 78 SUM= 10.981 DEL= 0.137E-06 STEP 79 SUM= 10.981 DEL= -0.161E-06 STEP 80 SUM= 10.981 DEL= 0.609E-08 STEP 81 SUM= 10.981 DEL= -0.167E-07 STEP 82 SUM= 10.981 DEL= 0.532E-08 STEP 83 SUM= 10.981 DEL= -0.623E-08 STEP 84 SUM= 10.981 DEL= -0.109E-08 STEP 85 SUM= 10.981 DEL= 0.346E-09 STEP 86 SUM= 10.981 DEL= -0.495E-09 STEP 87 SUM= 10.981 DEL= 0.696E-10 STEP 88 SUM= 10.981 DEL= -0.130E-09 STEP 89 SUM= 10.981 DEL= 0.295E-10 STEP 90 SUM= 10.981 DEL= -0.362E-10 STEP 91 SUM= 10.981 DEL= -0.797E-11 STEP 92 SUM= 10.981 DEL= -0.114E-11 STEP 93 SUM= 10.981 DEL= -0.515E-13 STEP 94 SUM= 10.981 DEL= -0.533E-14 STEP 95 SUM= 10.981 DEL= 0.000E+00 FINAL SUM= 10.981 CPTS: 6.918 1.587 1.227 1.249 GRA= 0.25E-10 0.14E-09-0.37E-10 0.66E-11-0.69E-10-0.24E-09 0.14E-10-0.83E-10 GRA=-0.31E-09 0.75E-10-0.70E-11 0.98E-11 0.33E-09-0.39E-09-0.64E-10-0.34E-11 GRA=-0.28E-10 0.64E-09 0.28E-11 0.52E-11-0.18E-09-0.42E-09 0.10E-10 0.15E-10 GRA=-0.20E-09 0.63E-09-0.41E-10 0.55E-10-0.23E-09-0.71E-09 0.13E-10 0.69E-10 GRA= 0.18E-09 0.30E-09 0.70E-11-0.51E-10-0.14E-10 0.22E-09 0.51E-10 0.19E-10 GRA= 0.18E-09 0.23E-10 0.38E-10 0.17E-10-0.37E-09-0.48E-09-0.27E-10-0.45E-10 GRA= 0.22E-09 0.42E-09 0.22E-10-0.45E-10 0.29E-10-0.88E-10-0.10E-10 0.98E-11 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.961 0.192 0.198 P: -17.344 -12.109 -0.377 D: 0.281 2) U: 0.958 0.210 0.195 P: -13.913 -11.410 0.304 D: 0.034 3) U: 0.959 0.208 0.193 P: -10.468 -10.643 0.988 D: 0.574 4) U: 0.946 0.278 0.165 P: -7.349 -9.956 1.572 D: 0.117 5) U: 0.938 0.318 0.138 P: -3.826 -8.843 2.112 D: 0.364 6) U: 0.929 0.337 0.150 P: -0.195 -7.554 2.588 D: 0.605 7) U: 0.917 0.383 0.107 P: 3.228 -6.501 3.052 D: 0.536 8) U: 0.882 0.461 0.096 P: 6.663 -4.891 3.582 D: 2.684 9) U: 0.828 0.559 0.035 P: 9.276 -3.144 3.878 D: 0.216 10) U: 0.799 0.602 0.007 P: 12.420 -0.847 3.841 D: 2.297 11) U: 0.717 0.696 -0.030 P: 15.901 2.093 3.333 D: 2.424 12) U: 0.688 0.722 -0.075 P: 18.566 4.247 3.401 D: 0.478 13) U: 0.679 0.731 -0.067 P: 20.733 6.869 3.213 D: 0.371 14) U: 0.684 0.728 -0.055 P: 23.153 9.494 3.047 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CA 101 -1.73 -0.10 6.79 0.17 3 0 2) CA 102 -1.74 -0.10 8.01 -5.74 3 -3 3) TA 103 -1.82 -0.16 6.74 -4.61 4 -25 4) GA 104 -1.66 -0.05 15.02 -5.72 1 15 5) CA 105 -1.80 0.05 13.49 -6.55 3 -15 6) AA 106 -1.83 0.20 12.04 -12.75 2 29 7) CA 107 -1.87 -0.01 9.65 -3.79 3 -16 8) AA 108 -1.92 0.08 4.63 -1.20 2 26 9) AA 109 -1.95 0.18 20.36 7.50 2 20 10) AA 110 -1.94 0.11 21.02 9.52 2 23 11) CA 111 -1.97 -0.20 14.93 11.85 3 -16 12) AA 112 -2.06 0.34 23.41 -7.01 2 29 13) CA 113 -2.08 -0.00 16.80 -4.90 3 -6 14) CA 114 -1.99 -0.07 13.45 2.13 3 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GB 128 -1.63 0.08 10.81 -2.20 1 0 2) GB 127 -1.69 0.09 11.35 -8.60 1 3 3) AB 126 -1.68 0.09 11.90 -7.18 2 25 4) CB 125 -1.76 0.03 7.00 -3.17 3 -15 5) GB 124 -1.76 -0.00 9.48 -2.48 1 15 6) TB 123 -1.87 -0.09 14.22 -8.30 4 -29 7) GB 122 -1.74 -0.01 15.80 -4.28 1 16 8) TB 121 -1.98 -0.13 22.66 -1.32 4 -26 9) TB 120 -1.97 -0.30 3.20 4.23 4 -20 10) TB 119 -1.94 -0.24 -1.55 5.63 4 -23 11) GB 118 -1.95 0.16 14.08 -1.48 1 16 12) TB 117 -2.09 -0.12 14.93 -14.20 4 -29 13) GB 116 -2.00 0.06 18.71 -11.33 1 6 14) GB 115 -2.02 0.08 21.70 -4.80 1 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) C101-G128 -1.68 -0.09 8.80 1.18 3 0 2) C102-G127 -1.71 -0.09 9.68 1.43 3 -3 3) T103-A126 -1.75 -0.12 9.32 1.28 4 -25 4) G104-C125 -1.71 -0.04 11.01 -1.28 1 15 5) C105-G124 -1.78 0.03 11.49 -2.03 3 -15 6) A106-T123 -1.85 0.14 13.13 -2.22 2 29 7) C107-G122 -1.80 -0.00 12.73 0.25 3 -16 8) A108-T121 -1.95 0.10 13.64 0.06 2 26 9) A109-T120 -1.96 0.24 11.78 1.63 2 20 10) A110-T119 -1.94 0.18 9.73 1.94 2 23 11) C111-G118 -1.96 -0.18 14.51 6.66 3 -16 12) A112-T117 -2.07 0.23 19.17 3.60 2 29 13) C113-G116 -2.04 -0.03 17.76 3.22 3 -6 14) C114-G115 -2.01 -0.07 17.58 3.47 3 0 Average: -1.87 0.02 12.88 1.37 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) C101-G128 -0.10 -0.01 0.06 -4.01 -2.03 -0.30 3 0 2) C102-G127 -0.04 -0.01 -0.03 -3.34 -14.34 0.82 3 -3 3) T103-A126 -0.14 -0.07 0.17 -5.16 -11.80 -0.56 4 -25 4) G104-C125 0.10 -0.02 -0.07 8.01 -8.90 -0.58 1 15 5) C105-G124 -0.04 0.05 -0.19 4.00 -9.03 -0.10 3 -15 6) A106-T123 0.04 0.12 -0.47 -2.18 -21.06 2.43 2 29 7) C107-G122 -0.13 -0.02 0.09 -6.15 -8.07 -1.58 3 -16 8) A108-T121 0.05 -0.05 0.12 -18.03 -2.53 -0.13 2 26 9) A109-T120 0.03 -0.11 0.72 17.16 11.73 0.56 2 20 10) A110-T119 0.01 -0.13 1.09 22.58 15.15 2.67 2 23 11) C111-G118 -0.02 -0.04 0.39 0.86 10.38 1.80 3 -16 12) A112-T117 0.03 0.23 -0.50 8.48 -21.20 4.41 2 29 13) C113-G116 -0.07 0.05 -0.14 -1.91 -16.23 0.60 3 -6 14) C114-G115 0.03 0.01 0.09 -8.25 -2.68 1.17 3 0 Average: -0.02 -0.00 0.09 0.86 -5.76 0.80 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 -0.03 0.01 3.52 2.28 -5.69 34.23 -1 3) C102/T103 -0.10 -0.07 3.69 -1.42 1.07 33.54 -3 4) T103/G104 0.23 0.18 3.13 9.76 -5.24 36.60 -9 5) G104/C105 -0.14 0.13 3.67 -2.79 -3.32 34.58 5 6) C105/A106 0.00 0.23 3.75 -1.40 -7.62 37.51 9 7) A106/C107 0.08 -0.44 3.88 -5.93 9.80 27.92 -6 8) C107/A108 -0.20 0.10 3.85 -9.81 3.70 40.99 9 9) A108/A109 0.01 0.29 3.46 12.79 15.42 25.76 4 10) A109/A110 0.10 -0.16 4.08 0.86 5.38 31.05 4 11) A110/C111 -0.09 -0.77 4.22 -3.43 9.31 27.51 -6 12) C111/A112 -0.24 0.97 2.95 11.89 -18.68 39.34 9 13) A112/C113 0.09 -0.54 3.58 -6.02 2.79 32.82 -6 14) C113/C114 0.13 -0.10 3.69 -3.42 7.75 36.51 -1 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G128/G127 -0.09 -0.01 3.61 1.61 -6.62 33.11 1 3) G127/A126 -0.00 0.01 3.50 0.40 1.48 34.92 3 4) A126/C125 0.00 -0.13 3.37 -3.41 8.14 36.62 9 5) C125/G124 -0.01 -0.05 3.80 1.21 3.18 34.10 5 6) G124/T123 -0.08 -0.17 4.02 4.78 -4.41 34.98 -9 7) T123/G122 0.25 0.31 3.32 -1.97 3.18 31.94 6 8) G122/T121 -0.38 -0.14 3.82 2.07 1.84 39.53 -9 9) T121/T120 0.03 -0.35 2.86 -22.40 -1.16 25.07 -4 10) T120/T119 0.12 0.14 3.71 -4.56 -1.96 28.94 -4 11) T119/G118 -0.07 0.85 4.92 18.28 -14.09 28.37 6 12) G118/T117 -0.28 -0.70 3.84 4.26 -12.90 36.73 -9 13) T117/G116 0.19 0.37 3.22 4.37 2.19 36.63 6 14) G116/G115 0.03 0.06 3.46 2.92 5.80 35.94 1 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 -0.06 0.01 3.57 1.94 0.47 33.67 -1 3) C102/T103 -0.05 -0.04 3.60 -0.51 -0.20 34.23 -3 4) T103/G104 0.12 0.15 3.25 3.17 -6.69 36.61 -9 5) G104/C105 -0.08 0.09 3.73 -0.79 -3.25 34.34 5 6) C105/A106 -0.04 0.20 3.88 1.69 -1.60 36.25 9 7) A106/C107 0.17 -0.38 3.60 -3.95 3.31 29.93 -6 8) C107/A108 -0.29 0.12 3.83 -3.87 0.93 40.26 9 9) A108/A109 0.02 0.32 3.16 -4.80 8.29 25.42 4 10) A109/A110 0.11 -0.15 3.89 -1.85 3.67 29.99 4 11) A110/C111 -0.08 -0.81 4.57 7.42 11.70 27.94 -6 12) C111/A112 -0.26 0.83 3.40 8.07 -2.89 38.04 9 13) A112/C113 0.14 -0.45 3.40 -0.82 0.30 34.72 -6 14) C113/C114 0.08 -0.08 3.57 -0.25 0.98 36.22 -1 Average: -0.02 -0.01 3.65 0.42 1.15 33.66 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 0.18 -0.51 3.63 3.84 -1.09 33.77 -1 3) C102/T103 0.32 -0.64 3.79 1.60 5.27 33.29 -3 4) T103/G104 0.49 -0.36 3.12 12.59 1.68 35.90 -9 5) G104/C105 0.26 -0.03 3.71 0.89 5.18 34.25 5 6) C105/A106 0.55 -0.08 3.78 4.76 0.88 36.61 9 7) A106/C107 0.63 -0.67 4.05 -1.95 14.73 28.05 -6 8) C107/A108 0.01 -0.80 4.01 -7.81 8.45 41.09 9 9) A108/A109 -0.33 0.17 3.77 11.44 20.46 24.78 4 10) A109/A110 -0.58 0.29 4.35 -3.26 15.96 27.87 4 11) A110/C111 -0.85 -0.30 4.73 -7.65 17.26 23.20 -6 12) C111/A112 -0.46 0.68 2.90 9.86 -4.99 37.68 9 13) A112/C113 0.45 -0.42 3.97 -2.62 13.80 31.22 -6 14) C113/C114 0.27 -0.48 3.96 -2.47 16.77 35.47 -1 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G128/G127 -0.38 -0.31 3.73 -1.45 12.64 32.64 1 3) G127/A126 -0.43 -0.32 3.61 -4.27 5.52 33.98 3 4) A126/C125 -0.20 -0.40 3.36 -6.44 -1.97 36.40 9 5) C125/G124 -0.21 -0.45 3.82 -0.56 1.69 34.12 5 6) G124/T123 -0.52 -0.19 4.07 1.37 11.25 34.98 -9 7) T123/G122 -0.17 -0.38 3.57 -5.34 5.08 30.23 6 8) G122/T121 -0.67 0.16 3.99 -0.10 11.07 37.03 -9 9) T121/T120 0.10 0.20 3.17 -21.38 6.66 23.86 -4 10) T120/T119 0.32 -1.05 3.83 -1.98 2.42 29.17 -4 11) T119/G118 -0.13 -1.30 5.41 19.02 16.64 27.35 6 12) G118/T117 -0.78 0.21 3.89 -0.60 21.41 36.35 -9 13) T117/G116 -0.61 -0.66 3.53 -3.53 8.36 34.99 6 14) G116/G115 -0.46 -0.01 3.70 -1.89 6.68 33.52 1 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 -0.10 -0.41 3.68 1.22 5.77 33.43 -1 3) C102/T103 -0.07 -0.48 3.72 -1.34 5.41 33.83 -3 4) T103/G104 0.15 -0.38 3.24 3.09 -0.20 36.19 -9 5) G104/C105 0.03 -0.24 3.78 0.17 3.44 34.34 5 6) C105/A106 0.03 -0.13 3.96 3.15 6.08 36.02 9 7) A106/C107 0.20 -0.51 3.83 -3.71 9.94 29.15 -6 8) C107/A108 -0.34 -0.32 4.04 -3.99 9.87 38.99 9 9) A108/A109 -0.10 0.19 3.43 -5.09 13.72 24.02 4 10) A109/A110 -0.12 -0.43 4.16 -2.75 9.36 29.45 4 11) A110/C111 -0.53 -0.77 5.07 5.74 16.78 25.16 -6 12) C111/A112 -0.62 0.49 3.37 5.00 8.37 36.19 9 13) A112/C113 -0.12 -0.53 3.79 -3.18 11.08 33.58 -6 14) C113/C114 -0.10 -0.24 3.85 -2.22 11.75 34.30 -1 Average: -0.13 -0.29 3.84 -0.30 8.57 32.67 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) C101/C102 -0.03 0.01 1.06 0.22 0.03 1.08 3.57 -1 3) C102/T103 -0.02 -0.01 -0.16 -0.06 0.02 0.17 3.60 -3 4) T103/G104 0.08 0.07 1.49 -4.13 0.11 4.39 3.25 -9 5) G104/C105 -0.00 0.03 -1.27 -2.49 0.03 2.80 3.73 5 6) C105/A106 0.03 0.08 0.05 -1.41 0.08 1.41 3.88 9 7) A106/C107 0.13 -0.23 -3.55 0.84 0.26 3.65 3.61 -6 8) C107/A108 -0.14 0.01 -4.79 1.12 0.14 4.92 3.83 9 9) A108/A109 0.03 0.18 -2.94 6.72 0.19 7.33 3.16 4 10) A109/A110 0.09 -0.09 0.20 3.36 0.13 3.37 3.89 4 11) A110/C111 -0.06 -0.45 2.65 6.98 0.46 7.46 4.58 -6 12) C111/A112 -0.15 0.42 3.41 0.18 0.45 3.41 3.43 9 13) A112/C113 0.11 -0.20 0.59 0.68 0.23 0.90 3.41 -6 14) C113/C114 0.04 -0.04 -0.07 0.73 0.06 0.73 3.57 -1 Overall axis bend ... UU= 38.21 PP= 38.16 Duplex Offset L.Dir ... wrt end-to-end vector 1) C101 0.00 0.00 2) C102 1.09 -107.43 3) T103 2.12 -141.49 4) G104 3.06 -177.63 5) C105 3.78 148.13 6) A106 4.38 111.23 7) C107 5.09 84.16 8) A108 5.37 41.52 9) A109 5.11 13.83 10) A110 4.48 -16.46 11) C111 3.28 -37.75 12) A112 2.61 -77.73 13) C113 1.25 -111.23 14) C114 0.00 0.00 Path length= 47.51 End-to-end= 46.03 Shortening= 3.12 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CA 101 22.10 -24.56 174.04 25.31 C2'-endo 108.2 103.5 105.1 2)CA 102 27.44 -22.51 147.55 27.51 C2'-endo 107.7 102.9 105.1 3)TA 103 30.77 -24.84 146.42 30.82 C2'-endo 107.3 102.2 104.8 4)GA 104 27.39 -21.41 142.94 27.53 C1'-exo 106.7 103.5 105.1 5)CA 105 23.17 -20.06 151.77 23.40 C2'-endo 108.3 103.6 105.8 6)AA 106 27.70 -25.51 157.49 28.40 C2'-endo 107.5 102.9 104.5 7)CA 107 37.53 -27.98 140.21 37.62 C1'-exo 105.3 101.5 103.6 8)AA 108 -14.15 27.45 29.42 32.56 C3'-endo 108.1 103.0 102.9 9)AA 109 16.94 -18.08 171.02 18.83 C2'-endo 108.7 104.4 105.0 10)AA 110 14.51 -11.72 146.24 14.53 C2'-endo 108.7 104.8 105.4 11)CA 111 27.39 -21.62 143.88 27.51 C1'-exo 106.9 103.2 104.8 12)AA 112 19.96 -23.64 179.54 24.26 C2'-endo 108.2 103.6 104.9 13)CA 113 30.30 -23.13 141.66 30.39 C1'-exo 106.8 102.9 104.6 14)CA 114 26.15 -19.98 142.16 26.18 C1'-exo 107.7 103.3 104.5 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CA 101 -109.53 55.56 140.79 -179.02 -96.39 -59.71 -176.49 2)CA 102 -107.30 51.33 132.81 -177.61 -97.85 -60.47 -176.33 3)TA 103 -107.33 48.55 133.70 -178.80 -101.41 -59.47 -176.28 4)GA 104 -99.77 49.89 129.85 -178.95 -105.35 -60.53 176.76 5)CA 105 -110.39 54.35 132.60 -176.56 -98.48 -59.26 -176.54 6)AA 106 -101.15 53.87 137.04 -172.26 -91.63 -63.98 -179.95 7)CA 107 -103.69 45.28 130.63 -172.39 -119.18 -74.06 169.33 8)AA 108 -145.34 53.95 86.74 -153.50 -79.05 -61.06 -175.53 9)AA 109 -104.34 54.19 135.00 -168.28 -100.64 -66.02 -176.89 10)AA 110 -106.06 48.44 127.86 -168.41 -96.19 -63.12 -177.84 11)CA 111 -109.14 49.52 129.49 -174.81 -119.17 -61.18 175.57 12)AA 112 -100.34 55.56 141.56 -176.09 -92.10 -62.32 179.46 13)CA 113 -108.29 49.06 130.46 -171.40 -98.16 -65.80 -177.22 14)CA 114 -108.22 47.83 126.94 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GB 128 35.99 -32.30 156.34 36.51 C2'-endo 106.5 101.5 102.6 2)GB 127 29.84 -25.80 151.73 30.13 C2'-endo 106.9 102.6 104.5 3)AB 126 27.73 -25.04 155.72 28.27 C2'-endo 107.5 102.8 104.7 4)CB 125 28.27 -25.14 154.10 28.72 C2'-endo 107.2 102.7 105.0 5)GB 124 28.74 -24.90 151.84 29.01 C2'-endo 107.1 103.0 104.5 6)TB 123 25.29 -18.60 138.75 25.50 C1'-exo 107.4 103.5 105.1 7)GB 122 25.58 -23.61 157.36 26.24 C2'-endo 107.6 103.4 105.0 8)TB 121 14.70 -15.23 167.89 15.99 C2'-endo 108.7 104.5 106.0 9)TB 120 -13.82 29.83 33.06 36.66 C3'-endo 107.4 103.1 102.1 10)TB 119 7.55 15.96 66.11 40.65 C4'-exo 106.2 103.8 103.3 11)GB 118 29.76 -25.27 150.51 29.92 C2'-endo 106.7 102.8 104.1 12)TB 117 29.03 -22.90 144.11 29.12 C2'-endo 106.8 102.9 104.5 13)GB 116 29.82 -24.25 146.92 29.83 C2'-endo 107.1 103.0 104.6 14)GB 115 17.06 -21.93 186.04 22.62 C3'-exo 108.5 104.0 105.0 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GB 128 -98.15 47.50 138.71 ...... ...... ...... ...... 2)GB 127 -101.55 48.76 135.25 -175.46 -99.07 -61.75 -176.66 3)AB 126 -103.05 48.84 135.90 -178.21 -99.66 -58.77 -176.25 4)CB 125 -107.99 52.86 134.96 -178.97 -103.76 -57.45 -175.39 5)GB 124 -105.52 50.04 133.62 -177.61 -104.45 -58.78 -179.47 6)TB 123 -104.80 49.40 128.28 -175.30 -98.79 -60.49 -178.08 7)GB 122 -107.40 53.38 135.36 -174.29 -96.77 -62.28 -177.56 8)TB 121 -105.30 60.40 134.42 -175.54 -95.26 -61.20 179.38 9)TB 120 -148.13 56.02 83.14 -157.73 -82.82 -59.32 178.16 10)TB 119 -148.81 56.84 84.41 -160.23 -83.45 -68.91 169.88 11)GB 118 -95.11 44.09 134.80 -170.58 -98.70 -70.64 170.72 12)TB 117 -107.34 52.37 131.31 -166.90 -93.20 -69.11 -177.39 13)GB 116 -106.11 51.66 134.03 -179.81 -96.76 -60.93 -177.56 14)GB 115 -106.47 55.75 140.93 -174.95 -93.27 -62.80 178.09