ID code: 1GU5 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 17 Jun 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) TA 2 0.026 1 : 2) GA 3 0.035 1 : 3) TA 4 0.019 1 : 4) GA 5 0.039 1 : 5) TA 6 0.034 1 : 6) TA 7 0.030 1 : 7) GA 8 0.025 1 : 8) GA 9 0.053 1 : 9) CA 10 0.014 1 : 10) CA 11 0.013 1 : 11) AA 12 0.016 1 : 12) AA 13 0.015 1 : 13) TA 14 0.018 1 : 14) CA 15 0.017 1 : 15) AA 16 0.019 2 : 1) AB 116 0.014 2 : 2) CB 115 0.016 2 : 3) AB 114 0.035 2 : 4) CB 113 0.011 2 : 5) AB 112 0.023 2 : 6) AB 111 0.014 2 : 7) CB 110 0.017 2 : 8) CB 109 0.037 2 : 9) GB 108 0.036 2 : 10) GB 107 0.020 2 : 11) TB 106 0.025 2 : 12) TB 105 0.026 2 : 13) AB 104 0.020 2 : 14) GB 103 0.027 2 : 15) TB 102 0.052 Strand= 2 Nucleo= 30 Atoms = 615 Units = 30 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 15 levels ... Strand 1 has 15 bases (5'-3'): TGTGTTGGCCAATCA Strand 2 has 15 bases (3'-5'): ACACAACCGGTTAGT FIRST SUM= 53.974 CPTS: 5.190 9.081 5.795 33.909 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 60 STEP 1 SUM= 53.974 DEL= 0.000E+00 STEP 2 SUM= 37.664 DEL= -0.163E+02 STEP 3 SUM= 45.602 DEL= 0.794E+01 STEP 4 SUM= 31.107 DEL= -0.145E+02 STEP 5 SUM= 23.470 DEL= -0.764E+01 STEP 6 SUM= 28.669 DEL= 0.520E+01 STEP 7 SUM= 20.618 DEL= -0.805E+01 STEP 8 SUM= 19.267 DEL= -0.135E+01 STEP 9 SUM= 18.029 DEL= -0.124E+01 STEP 10 SUM= 17.272 DEL= -0.757E+00 STEP 11 SUM= 16.346 DEL= -0.926E+00 STEP 12 SUM= 15.996 DEL= -0.350E+00 STEP 13 SUM= 15.613 DEL= -0.384E+00 STEP 14 SUM= 15.261 DEL= -0.352E+00 STEP 15 SUM= 14.880 DEL= -0.380E+00 STEP 16 SUM= 14.605 DEL= -0.276E+00 STEP 17 SUM= 14.239 DEL= -0.365E+00 STEP 18 SUM= 13.961 DEL= -0.278E+00 STEP 19 SUM= 15.375 DEL= 0.141E+01 STEP 20 SUM= 13.922 DEL= -0.145E+01 STEP 21 SUM= 13.848 DEL= -0.739E-01 STEP 22 SUM= 13.582 DEL= -0.266E+00 STEP 23 SUM= 15.577 DEL= 0.200E+01 STEP 24 SUM= 13.538 DEL= -0.204E+01 STEP 25 SUM= 13.505 DEL= -0.333E-01 STEP 26 SUM= 13.448 DEL= -0.575E-01 STEP 27 SUM= 13.383 DEL= -0.643E-01 STEP 28 SUM= 13.613 DEL= 0.229E+00 STEP 29 SUM= 13.352 DEL= -0.261E+00 STEP 30 SUM= 13.355 DEL= 0.267E-02 STEP 31 SUM= 13.337 DEL= -0.177E-01 STEP 32 SUM= 13.320 DEL= -0.172E-01 STEP 33 SUM= 13.296 DEL= -0.233E-01 STEP 34 SUM= 13.256 DEL= -0.405E-01 STEP 35 SUM= 13.207 DEL= -0.489E-01 STEP 36 SUM= 13.164 DEL= -0.433E-01 STEP 37 SUM= 13.139 DEL= -0.251E-01 STEP 38 SUM= 13.122 DEL= -0.166E-01 STEP 39 SUM= 13.095 DEL= -0.271E-01 STEP 40 SUM= 13.081 DEL= -0.144E-01 STEP 41 SUM= 13.055 DEL= -0.260E-01 STEP 42 SUM= 13.007 DEL= -0.478E-01 STEP 43 SUM= 13.120 DEL= 0.113E+00 STEP 44 SUM= 12.986 DEL= -0.134E+00 STEP 45 SUM= 12.959 DEL= -0.274E-01 STEP 46 SUM= 12.942 DEL= -0.162E-01 STEP 47 SUM= 12.936 DEL= -0.646E-02 STEP 48 SUM= 12.928 DEL= -0.745E-02 STEP 49 SUM= 12.923 DEL= -0.499E-02 STEP 50 SUM= 12.920 DEL= -0.299E-02 STEP 51 SUM= 12.919 DEL= -0.112E-02 STEP 52 SUM= 12.919 DEL= -0.429E-03 STEP 53 SUM= 12.919 DEL= -0.191E-03 STEP 54 SUM= 12.919 DEL= -0.463E-04 STEP 55 SUM= 12.919 DEL= -0.471E-04 STEP 56 SUM= 12.919 DEL= -0.169E-05 STEP 57 SUM= 12.919 DEL= -0.480E-05 STEP 58 SUM= 12.919 DEL= -0.121E-05 STEP 59 SUM= 12.919 DEL= -0.102E-05 STEP 60 SUM= 12.919 DEL= -0.238E-06 STEP 61 SUM= 12.919 DEL= -0.524E-07 STEP 62 SUM= 12.919 DEL= -0.132E-07 STEP 63 SUM= 12.919 DEL= -0.184E-07 STEP 64 SUM= 12.919 DEL= -0.122E-07 STEP 65 SUM= 12.919 DEL= -0.704E-08 STEP 66 SUM= 12.919 DEL= -0.595E-08 STEP 67 SUM= 12.919 DEL= -0.470E-09 STEP 68 SUM= 12.919 DEL= -0.621E-09 STEP 69 SUM= 12.919 DEL= -0.270E-09 STEP 70 SUM= 12.919 DEL= -0.120E-09 STEP 71 SUM= 12.919 DEL= -0.907E-10 STEP 72 SUM= 12.919 DEL= -0.313E-10 STEP 73 SUM= 12.919 DEL= -0.114E-11 STEP 74 SUM= 12.919 DEL= -0.277E-11 STEP 75 SUM= 12.919 DEL= -0.725E-12 STEP 76 SUM= 12.919 DEL= -0.167E-12 STEP 77 SUM= 12.919 DEL= -0.174E-12 STEP 78 SUM= 12.919 DEL= 0.000E+00 STEP 79 SUM= 12.919 DEL= 0.000E+00 FINAL SUM= 12.919 CPTS: 3.228 6.848 0.435 2.408 GRA=-0.24E-08-0.25E-08 0.13E-08-0.97E-08 0.73E-08-0.92E-08 0.13E-07 0.30E-08 GRA= 0.19E-08-0.12E-07-0.98E-09-0.16E-09 0.36E-08 0.79E-09-0.12E-07 0.23E-09 GRA= 0.65E-08-0.57E-08 0.11E-07-0.50E-08-0.19E-08-0.57E-08-0.63E-08 0.65E-08 GRA=-0.75E-08-0.46E-10-0.47E-08 0.10E-07-0.61E-08-0.16E-07 0.63E-09-0.67E-08 GRA=-0.19E-08-0.96E-09-0.30E-08 0.64E-08-0.72E-08 0.55E-08 0.19E-08 0.78E-08 GRA=-0.15E-08-0.14E-07-0.63E-08-0.22E-08-0.16E-08 0.58E-08 0.66E-10 0.12E-08 GRA=-0.66E-08 0.20E-08 0.30E-08-0.10E-08 0.65E-08 0.46E-08-0.35E-10-0.88E-08 GRA=-0.40E-08 0.58E-08-0.14E-08-0.22E-08 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: -0.999 -0.018 -0.038 P: 97.647 26.962 77.658 D: 2.274 2) U: -0.995 -0.040 -0.090 P: 94.276 26.721 77.481 D: 1.234 3) U: -0.995 -0.017 -0.094 P: 91.054 26.961 77.022 D: 0.850 4) U: -0.994 -0.016 -0.109 P: 87.482 26.686 76.787 D: 0.614 5) U: -0.996 0.009 -0.092 P: 84.406 26.785 76.160 D: 0.468 6) U: -0.993 -0.005 -0.116 P: 81.409 26.849 76.087 D: 0.712 7) U: -0.995 0.014 -0.101 P: 78.385 26.928 75.688 D: 0.799 8) U: -0.997 0.007 -0.072 P: 74.742 26.960 75.562 D: 0.809 9) U: -0.994 0.065 -0.084 P: 71.449 26.664 75.372 D: 0.258 10) U: -0.989 0.101 -0.107 P: 68.189 26.899 74.934 D: 1.040 11) U: -0.985 0.160 -0.069 P: 65.285 27.356 74.342 D: 0.352 12) U: -0.984 0.161 -0.080 P: 62.156 27.754 74.192 D: 0.660 13) U: -0.975 0.211 -0.073 P: 59.056 28.602 73.682 D: 1.213 14) U: -0.976 0.212 -0.053 P: 55.826 29.717 73.363 D: 1.636 15) U: -0.982 0.184 -0.035 P: 52.539 30.283 73.559 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) TA 2 -2.03 -0.10 9.72 -3.07 4 0 2) GA 3 -1.17 0.22 5.20 0.67 1 16 3) TA 4 -1.82 -0.04 5.22 -4.30 4 -29 4) GA 5 -1.53 0.17 -3.85 -2.29 1 16 5) TA 6 -1.64 -0.14 -2.44 -3.29 4 -23 6) TA 7 -1.60 0.04 3.46 -5.60 4 -26 7) GA 8 -1.58 0.06 10.58 0.24 1 11 8) GA 9 -1.56 0.00 2.59 0.82 1 5 9) CA 10 -1.76 -0.31 4.60 3.18 3 -5 10) CA 11 -1.75 -0.24 3.97 1.07 3 -11 11) AA 12 -1.53 -0.11 11.94 -6.38 2 26 12) AA 13 -1.76 -0.03 6.51 -3.93 2 24 13) TA 14 -1.55 -0.32 6.78 -1.71 4 -22 14) CA 15 -1.88 -0.80 4.22 0.51 3 -12 15) AA 16 -0.90 -0.60 4.22 0.03 2 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) AB 116 -0.74 -0.31 1.96 -3.74 2 0 2) CB 115 -1.75 -0.20 -0.01 -3.40 3 -16 3) AB 114 -1.34 0.22 -0.68 -6.53 2 29 4) CB 113 -1.30 0.11 9.07 -5.21 3 -16 5) AB 112 -1.66 0.26 7.26 -5.46 2 23 6) AB 111 -1.37 0.09 6.60 -4.28 2 26 7) CB 110 -1.66 -0.06 -2.24 0.92 3 -11 8) CB 109 -1.48 0.04 7.13 -2.34 3 -5 9) GB 108 -1.87 0.22 7.21 -3.58 1 5 10) GB 107 -1.76 0.31 8.41 -0.47 1 11 11) TB 106 -1.47 0.20 1.80 -4.83 4 -26 12) TB 105 -1.62 0.15 -1.94 -3.70 4 -24 13) AB 104 -1.58 0.54 -2.86 -3.37 2 22 14) GB 103 -1.45 0.79 7.56 -4.74 1 12 15) TB 102 -1.95 0.60 11.96 -5.37 4 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) T 2-A116 -1.38 0.11 5.84 0.34 4 0 2) G 3-C115 -1.46 0.21 2.59 2.04 1 16 3) T 4-A114 -1.58 -0.13 2.27 1.11 4 -29 4) G 5-C113 -1.41 0.03 2.61 1.46 1 16 5) T 6-A112 -1.65 -0.20 2.41 1.09 4 -23 6) T 7-A111 -1.48 -0.02 5.03 -0.66 4 -26 7) G 8-C110 -1.62 0.06 4.17 -0.34 1 11 8) G 9-C109 -1.52 -0.02 4.86 1.58 1 5 9) C 10-G108 -1.81 -0.26 5.91 3.38 3 -5 10) C 11-G107 -1.76 -0.27 6.19 0.77 3 -11 11) A 12-T106 -1.50 -0.15 6.87 -0.77 2 26 12) A 13-T105 -1.69 -0.09 2.29 -0.12 2 24 13) T 14-A104 -1.56 -0.43 1.96 0.83 4 -22 14) C 15-G103 -1.67 -0.79 5.89 2.63 3 -12 15) A 16-T102 -1.42 -0.60 8.09 2.70 2 0 Average: -1.57 -0.17 4.46 1.07 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) T 2-A116 -1.29 -0.42 -0.57 7.76 -6.80 2.10 4 0 2) G 3-C115 0.58 0.02 0.09 5.21 -2.73 3.48 1 16 3) T 4-A114 -0.48 0.17 -0.09 5.90 -10.83 4.89 4 -29 4) G 5-C113 -0.23 0.28 -0.13 -12.92 -7.50 8.00 1 16 5) T 6-A112 0.02 0.12 0.26 -9.70 -8.75 7.38 4 -23 6) T 7-A111 -0.23 0.13 -0.10 -3.15 -9.88 6.42 4 -26 7) G 8-C110 0.07 -0.01 0.14 12.82 1.16 -1.41 1 11 8) G 9-C109 -0.08 0.05 -0.52 -4.53 -1.52 0.06 1 5 9) C 10-G108 0.11 -0.08 -0.27 -2.61 -0.39 -1.21 3 -5 10) C 11-G107 0.01 0.07 0.23 -4.44 0.59 0.07 3 -11 11) A 12-T106 -0.06 0.09 -0.14 10.14 -11.21 5.77 2 26 12) A 13-T105 -0.14 0.12 0.32 8.45 -7.63 6.79 2 24 13) T 14-A104 0.02 0.23 0.09 9.64 -5.08 6.79 4 -22 14) C 15-G103 -0.43 -0.01 -0.13 -3.34 -4.23 1.40 3 -12 15) A 16-T102 1.05 -0.00 -0.11 -7.74 -5.35 10.10 2 0 Average: -0.07 0.05 -0.06 0.77 -5.34 4.04 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 2/G 3 0.84 0.47 3.71 -5.44 6.85 44.12 -9 3) G 3/T 4 -0.75 -0.62 3.16 1.16 -5.66 28.18 6 4) T 4/G 5 0.48 0.39 3.56 -8.22 2.13 45.09 -9 5) G 5/T 6 -0.35 -0.55 3.32 -0.07 -1.84 31.34 6 6) T 6/T 7 0.21 0.36 2.81 7.29 -3.09 33.33 -4 7) T 7/G 8 -0.05 0.08 3.17 6.03 6.67 24.90 -9 8) G 8/G 9 0.18 -0.16 3.31 -6.76 1.78 39.07 1 9) G 9/C 10 -0.56 -0.52 3.41 0.12 5.17 32.01 5 10) C 10/C 11 -0.00 0.20 3.54 -1.47 0.19 37.00 -1 11) C 11/A 12 0.51 0.31 2.80 11.93 -6.63 33.77 9 12) A 12/A 13 -0.34 0.17 3.39 -5.52 3.06 34.49 4 13) A 13/T 14 0.37 -0.62 3.12 2.87 0.87 31.23 7 14) T 14/C 15 -0.60 -0.80 3.30 -3.48 1.49 33.70 -2 15) C 15/A 16 1.11 0.53 3.33 -0.90 1.25 48.90 9 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A116/C115 -1.03 -0.04 3.05 -2.89 -2.78 42.73 9 3) C115/A114 0.31 0.77 3.33 0.47 -2.43 26.77 -6 4) A114/C113 0.22 -0.28 3.60 10.60 1.20 41.97 9 5) C113/A112 -0.60 0.39 2.93 -3.30 0.59 31.97 -6 6) A112/A111 0.46 -0.35 3.17 0.74 1.97 34.28 4 7) A111/C110 -0.36 -0.21 2.93 -9.94 4.36 32.73 9 8) C110/C109 0.34 0.21 3.97 10.60 -4.46 37.60 -1 9) C109/G108 -0.75 0.40 3.16 -1.81 -4.04 33.28 5 10) G108/G107 0.09 -0.05 3.05 0.36 0.80 35.72 1 11) G107/T106 0.58 -0.29 3.17 -2.65 -5.17 28.06 -9 12) T106/T105 -0.26 -0.13 2.92 -3.83 0.52 33.47 -4 13) T105/A104 0.21 0.72 3.35 1.68 1.68 31.23 7 14) A104/G103 -0.14 0.57 3.52 9.50 -0.64 39.09 2 15) G103/T102 -0.38 -0.53 3.31 3.50 -2.37 40.20 -9 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 2/G 3 -0.09 0.26 3.38 -4.17 4.82 43.42 -9 3) G 3/T 4 -0.22 -0.70 3.24 0.81 -1.61 27.48 6 4) T 4/G 5 0.35 0.33 3.58 1.19 0.47 43.53 -9 5) G 5/T 6 -0.47 -0.47 3.12 -1.68 -1.21 31.66 6 6) T 6/T 7 0.34 0.35 2.99 4.01 -2.53 33.81 -4 7) T 7/G 8 -0.20 0.14 3.05 -1.95 1.16 28.82 -9 8) G 8/G 9 0.26 -0.19 3.64 1.92 3.12 38.34 1 9) G 9/C 10 -0.66 -0.46 3.29 -0.85 4.61 32.64 5 10) C 10/C 11 0.05 0.12 3.30 -0.56 -0.30 36.36 -1 11) C 11/A 12 0.54 0.30 2.98 4.64 -0.73 30.92 9 12) A 12/A 13 -0.30 0.15 3.15 -4.68 1.27 33.98 4 13) A 13/T 14 0.29 -0.67 3.23 2.27 -0.40 31.23 7 14) T 14/C 15 -0.37 -0.68 3.41 3.01 1.06 36.39 -2 15) C 15/A 16 0.36 0.53 3.32 1.30 1.81 44.55 9 Average: -0.01 -0.07 3.26 0.38 0.82 35.22 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 2/G 3 0.86 -0.33 3.85 -4.19 12.16 43.66 -9 3) G 3/T 4 -0.69 -1.02 3.28 2.02 -3.02 28.09 6 4) T 4/G 5 0.71 -0.91 3.52 -4.98 2.44 45.53 -9 5) G 5/T 6 -0.23 -1.54 3.24 1.33 -3.40 31.24 6 6) T 6/T 7 0.42 -0.55 2.78 9.53 -2.77 32.79 -4 7) T 7/G 8 0.03 -0.26 3.26 7.07 9.55 24.43 -9 8) G 8/G 9 0.21 -0.84 3.46 -6.68 6.14 38.71 1 9) G 9/C 10 -0.61 -1.24 3.55 -1.07 7.04 31.79 5 10) C 10/C 11 0.05 -0.64 3.68 -2.79 3.00 36.64 -1 11) C 11/A 12 0.67 -0.22 2.88 13.12 -1.77 32.94 9 12) A 12/A 13 0.07 -0.30 3.50 -2.23 8.40 34.38 4 13) A 13/T 14 0.58 -1.18 3.20 4.29 4.21 31.05 7 14) T 14/C 15 -0.21 -1.48 3.44 -3.06 4.61 33.68 -2 15) C 15/A 16 1.60 -0.41 3.42 -1.03 4.83 48.65 9 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A116/C115 -1.30 -0.81 3.07 -5.43 3.49 42.45 9 3) C115/A114 0.04 -1.52 3.31 -1.79 2.23 26.72 -6 4) A114/C113 -0.13 -0.40 3.66 5.70 1.94 42.76 9 5) C113/A112 -0.72 -0.81 3.00 -6.08 3.79 31.39 -6 6) A112/A111 0.29 -0.17 3.22 -2.04 2.25 34.07 4 7) A111/C110 -0.36 -0.50 2.99 -10.55 -2.91 32.52 9 8) C110/C109 0.17 -1.10 4.07 9.67 5.81 37.83 -1 9) C109/G108 -0.82 -0.95 3.35 -3.47 8.07 32.59 5 10) G108/G107 0.13 -0.62 3.25 -0.91 4.11 35.05 1 11) G107/T106 0.59 -0.24 3.23 -3.77 7.61 27.78 -9 12) T106/T105 -0.34 -0.76 2.93 -6.15 -0.52 33.14 -4 13) T105/A104 0.23 -1.68 3.26 -0.11 -2.80 31.20 7 14) A104/G103 -0.04 -1.45 3.58 6.19 2.09 39.72 2 15) G103/T102 -0.22 -0.11 3.44 -0.26 8.94 39.54 -9 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 2/G 3 -0.24 -0.56 3.50 -4.92 7.83 43.24 -9 3) G 3/T 4 -0.33 -1.28 3.28 0.21 -0.32 27.28 6 4) T 4/G 5 0.31 -0.63 3.62 0.35 1.89 44.20 -9 5) G 5/T 6 -0.46 -1.14 3.16 -2.14 0.46 31.59 6 6) T 6/T 7 0.37 -0.37 3.00 3.89 0.06 33.56 -4 7) T 7/G 8 -0.17 -0.38 3.12 -1.89 3.51 28.61 -9 8) G 8/G 9 0.20 -0.96 3.75 1.50 6.05 38.15 1 9) G 9/C 10 -0.72 -1.09 3.45 -2.28 7.56 32.19 5 10) C 10/C 11 0.09 -0.63 3.46 -1.85 3.56 35.84 -1 11) C 11/A 12 0.63 -0.22 3.04 4.80 3.12 30.15 9 12) A 12/A 13 -0.17 -0.54 3.23 -4.44 4.02 34.08 4 13) A 13/T 14 0.40 -1.41 3.25 1.88 0.85 31.35 7 14) T 14/C 15 -0.12 -1.47 3.49 1.52 3.19 36.72 -2 15) C 15/A 16 0.70 -0.22 3.47 -0.55 6.87 44.17 9 Average: 0.03 -0.78 3.35 -0.28 3.48 35.08 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) T 2/G 3 -0.02 0.15 -0.92 3.12 0.15 3.25 3.38 -9 3) G 3/T 4 -0.10 -0.35 1.14 -0.69 0.37 1.33 3.26 6 4) T 4/G 5 0.18 0.17 0.86 0.12 0.25 0.87 3.59 -9 5) G 5/T 6 -0.23 -0.24 -1.49 -0.84 0.33 1.71 3.14 6 6) T 6/T 7 0.17 0.18 1.39 -0.78 0.25 1.60 3.00 -4 7) T 7/G 8 -0.07 0.06 -1.10 0.84 0.09 1.38 3.05 -9 8) G 8/G 9 0.16 -0.11 1.23 1.20 0.19 1.72 3.64 1 9) G 9/C 10 -0.36 -0.22 -1.89 2.80 0.42 3.38 3.31 5 10) C 10/C 11 -0.01 0.13 -0.84 2.31 0.13 2.46 3.30 -1 11) C 11/A 12 0.29 0.18 3.96 0.81 0.34 4.04 3.00 9 12) A 12/A 13 -0.11 0.09 -0.10 0.61 0.14 0.62 3.16 4 13) A 13/T 14 0.16 -0.33 2.60 -1.35 0.37 2.93 3.25 7 14) T 14/C 15 -0.27 -0.32 -0.93 -0.73 0.42 1.18 3.43 -2 15) C 15/A 16 0.12 0.33 -0.90 1.73 0.35 1.95 3.34 9 Overall axis bend ... UU= 11.58 PP= 15.24 Duplex Offset L.Dir ... wrt end-to-end vector 1) T 2 0.00 0.00 2) G 3 0.50 -105.13 3) T 4 0.49 -152.28 4) G 5 1.02 169.80 5) T 6 1.19 121.26 6) T 7 1.31 98.05 7) G 8 1.47 68.76 8) G 9 1.68 37.77 9) C 10 2.22 8.62 10) C 11 2.23 -31.98 11) A 12 2.02 -75.17 12) A 13 1.83 -106.52 13) T 14 1.29 -151.36 14) C 15 0.59 139.97 15) A 16 0.00 0.00 Path length= 45.87 End-to-end= 45.42 Shortening= 0.98 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)TA 2 36.56 -31.13 150.42 36.71 C2'-endo 105.3 102.2 103.5 2)GA 3 29.44 -30.08 166.26 31.61 C2'-endo 106.5 103.3 103.7 3)TA 4 35.89 -32.11 154.20 36.45 C2'-endo 105.3 102.1 103.8 4)GA 5 31.88 -33.51 168.72 34.87 C2'-endo 105.9 102.5 103.1 5)TA 6 24.22 -30.31 183.72 31.00 C3'-exo 107.0 103.5 103.4 6)TA 7 34.72 -24.50 135.17 35.37 C1'-exo 104.5 103.2 104.1 7)GA 8 44.89 -37.75 150.14 44.98 C2'-endo 105.0 99.0 102.9 8)GA 9 34.91 -24.30 134.51 35.53 C1'-exo 104.7 103.4 104.1 9)CA 10 28.90 -28.92 164.49 30.64 C2'-endo 106.0 103.8 103.4 10)CA 11 29.13 -29.15 164.22 30.91 C2'-endo 106.4 103.3 104.0 11)AA 12 39.18 -31.98 147.08 39.19 C2'-endo 105.0 101.4 103.4 12)AA 13 34.99 -29.37 148.75 35.17 C2'-endo 105.4 102.4 104.1 13)TA 14 40.74 -32.80 145.83 40.76 C2'-endo 104.6 100.9 103.7 14)CA 15 33.84 -33.60 163.46 35.77 C2'-endo 105.7 102.2 103.3 15)AA 16 35.04 -36.19 167.28 37.92 C2'-endo 105.7 101.6 102.7 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)TA 2 -107.76 38.63 136.09 -179.74 -108.95 -57.54 -172.88 2)GA 3 -109.72 44.63 144.31 176.22 -114.69 -50.06 172.10 3)TA 4 -120.70 56.74 137.52 175.03 -97.42 -66.74 -166.12 4)GA 5 -113.53 51.42 143.69 -173.74 -115.39 33.51 -170.61 5)TA 6 -113.48 -54.00 150.91 -173.51 -93.27 -55.87 172.54 6)TA 7 -108.83 43.72 123.92 -163.76 -106.82 -56.56 166.17 7)GA 8 -93.31 44.19 144.08 -146.05 -160.12 -50.14 145.37 8)GA 9 -130.84 38.78 126.06 -168.72 -111.03 -45.54 -175.83 9)CA 10 -116.84 33.73 138.91 -176.01 -103.29 -51.60 -177.99 10)CA 11 -113.35 42.00 137.63 -169.40 -100.21 -50.45 170.03 11)AA 12 -95.54 41.85 135.05 -162.44 -143.89 -36.99 149.16 12)AA 13 -115.32 39.99 133.31 -174.74 -98.57 -51.32 177.18 13)TA 14 -107.99 39.89 135.43 -173.46 -131.44 -20.41 170.62 14)CA 15 -113.10 18.99 143.05 177.83 -95.72 -64.22 -173.04 15)AA 16 -105.01 48.44 150.83 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)AB 116 23.91 -35.88 196.41 38.20 C3'-exo 106.9 102.6 101.6 2)CB 115 37.14 -36.28 162.35 38.97 C2'-endo 105.4 101.2 102.8 3)AB 114 32.48 -31.49 161.38 33.94 C2'-endo 105.9 102.6 103.7 4)CB 113 42.76 -36.57 150.90 43.04 C2'-endo 104.5 99.9 103.1 5)AB 112 34.86 -30.63 152.60 35.26 C2'-endo 105.1 102.7 103.5 6)AB 111 37.63 -31.55 149.05 37.76 C2'-endo 105.0 101.9 103.6 7)CB 110 26.70 -28.11 168.33 29.19 C2'-endo 106.2 103.8 104.1 8)CB 109 36.02 -28.70 144.91 36.00 C2'-endo 105.1 102.8 103.6 9)GB 108 33.95 -28.07 147.71 34.02 C2'-endo 105.4 103.0 103.9 10)GB 107 41.36 -37.08 154.73 42.07 C2'-endo 105.1 100.0 103.3 11)TB 106 36.94 -30.80 148.19 37.12 C2'-endo 104.9 102.0 103.7 12)TB 105 23.98 -31.32 186.86 32.16 C3'-exo 106.9 103.3 103.1 13)AB 104 31.10 -31.05 163.98 32.96 C2'-endo 105.7 103.1 103.5 14)GB 103 35.34 -34.49 162.64 37.08 C2'-endo 106.3 101.4 103.3 15)TB 102 37.63 -30.69 147.00 37.59 C2'-endo 105.1 102.2 103.4 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)AB 116 -111.81 -73.23 166.33 ...... ...... ...... ...... 2)CB 115 -101.83 -0.05 145.61 -160.79 -113.67 25.81 -141.39 3)AB 114 -116.95 42.35 138.69 -171.70 -96.63 -23.93 -172.34 4)CB 113 -104.18 33.25 141.16 -156.41 -152.31 -39.75 151.61 5)AB 112 -111.51 40.78 134.45 -171.25 -106.62 -38.59 166.92 6)AB 111 -99.54 42.79 136.89 -158.41 -147.93 -37.92 148.32 7)CB 110 -122.39 39.74 138.81 -170.12 -91.68 -59.39 178.58 8)CB 109 -111.10 32.50 132.64 -178.04 -119.20 -41.62 -179.71 9)GB 108 -110.20 38.18 133.31 -172.26 -105.87 -39.39 171.64 10)GB 107 -98.99 39.90 143.66 -157.42 -141.00 -49.95 159.39 11)TB 106 -105.96 40.32 133.68 -157.93 -130.98 -45.06 155.35 12)TB 105 -116.80 -57.34 151.80 -176.90 -88.88 -58.30 179.91 13)AB 104 -119.32 53.54 140.80 -174.80 -115.00 40.41 -172.86 14)GB 103 -119.51 57.57 147.85 172.56 -101.91 -70.04 -161.27 15)TB 102 -109.97 42.83 137.68 -169.09 -131.78 -55.33 160.87