ID code: 1FOS, PDT014 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 19 May 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) AA 2 0.029 1 : 2) TA 3 0.035 1 : 3) GA 4 0.035 1 : 4) GA 5 0.033 1 : 5) AA 6 0.026 1 : 6) TA 7 0.029 1 : 7) GA 8 0.032 1 : 8) AA 9 0.028 1 : 9) GA 10 0.030 1 : 10) TA 11 0.042 1 : 11) CA 12 0.022 1 : 12) AA 13 0.035 1 : 13) TA 14 0.032 1 : 14) AA 15 0.055 1 : 15) GA 16 0.028 1 : 16) GA 17 0.030 1 : 17) AA 18 0.039 1 : 18) GA 19 0.049 1 : 19) AA 20 0.050 2 : 1) TB 40 0.049 2 : 2) AB 39 0.029 2 : 3) CB 38 0.019 2 : 4) CB 37 0.015 2 : 5) TB 36 0.026 2 : 6) AB 35 0.049 2 : 7) CB 34 0.020 2 : 8) TB 33 0.026 2 : 9) CB 32 0.025 2 : 10) AB 31 0.035 2 : 11) GB 30 0.038 2 : 12) TB 29 0.031 2 : 13) AB 28 0.054 2 : 14) TB 27 0.045 2 : 15) CB 26 0.016 2 : 16) CB 25 0.026 2 : 17) TB 24 0.043 2 : 18) CB 23 0.021 2 : 19) TB 22 0.038 Strand= 2 Nucleo= 38 Atoms = 773 Units = 38 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 19 levels ... Strand 1 has 19 bases (5'-3'): ATGGATGAGTCATAGGAGA Strand 2 has 19 bases (3'-5'): TACCTACTCAGTATCCTCT FIRST SUM= 38.824 CPTS: 3.004 6.204 4.032 25.584 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 76 STEP 1 SUM= 38.824 DEL= 0.000E+00 STEP 2 SUM= 28.575 DEL= -0.102E+02 STEP 3 SUM= 28.320 DEL= -0.254E+00 STEP 4 SUM= 23.387 DEL= -0.493E+01 STEP 5 SUM= 17.715 DEL= -0.567E+01 STEP 6 SUM= 22.047 DEL= 0.433E+01 STEP 7 SUM= 15.662 DEL= -0.638E+01 STEP 8 SUM= 16.558 DEL= 0.896E+00 STEP 9 SUM= 14.820 DEL= -0.174E+01 STEP 10 SUM= 13.786 DEL= -0.103E+01 STEP 11 SUM= 13.545 DEL= -0.241E+00 STEP 12 SUM= 13.273 DEL= -0.272E+00 STEP 13 SUM= 12.957 DEL= -0.315E+00 STEP 14 SUM= 12.767 DEL= -0.191E+00 STEP 15 SUM= 12.586 DEL= -0.181E+00 STEP 16 SUM= 12.358 DEL= -0.227E+00 STEP 17 SUM= 12.198 DEL= -0.161E+00 STEP 18 SUM= 12.044 DEL= -0.154E+00 STEP 19 SUM= 11.941 DEL= -0.103E+00 STEP 20 SUM= 11.811 DEL= -0.130E+00 STEP 21 SUM= 11.683 DEL= -0.127E+00 STEP 22 SUM= 11.569 DEL= -0.114E+00 STEP 23 SUM= 12.034 DEL= 0.465E+00 STEP 24 SUM= 11.550 DEL= -0.484E+00 STEP 25 SUM= 11.520 DEL= -0.297E-01 STEP 26 SUM= 11.467 DEL= -0.534E-01 STEP 27 SUM= 11.372 DEL= -0.946E-01 STEP 28 SUM= 12.307 DEL= 0.935E+00 STEP 29 SUM= 11.354 DEL= -0.953E+00 STEP 30 SUM= 11.328 DEL= -0.265E-01 STEP 31 SUM= 11.282 DEL= -0.457E-01 STEP 32 SUM= 11.233 DEL= -0.496E-01 STEP 33 SUM= 11.903 DEL= 0.670E+00 STEP 34 SUM= 11.222 DEL= -0.681E+00 STEP 35 SUM= 11.218 DEL= -0.428E-02 STEP 36 SUM= 11.210 DEL= -0.805E-02 STEP 37 SUM= 11.182 DEL= -0.273E-01 STEP 38 SUM= 11.140 DEL= -0.421E-01 STEP 39 SUM= 11.179 DEL= 0.382E-01 STEP 40 SUM= 11.126 DEL= -0.527E-01 STEP 41 SUM= 11.122 DEL= -0.432E-02 STEP 42 SUM= 11.115 DEL= -0.701E-02 STEP 43 SUM= 11.105 DEL= -0.968E-02 STEP 44 SUM= 11.092 DEL= -0.130E-01 STEP 45 SUM= 11.076 DEL= -0.157E-01 STEP 46 SUM= 11.058 DEL= -0.183E-01 STEP 47 SUM= 11.052 DEL= -0.570E-02 STEP 48 SUM= 11.048 DEL= -0.423E-02 STEP 49 SUM= 11.040 DEL= -0.764E-02 STEP 50 SUM= 11.026 DEL= -0.139E-01 STEP 51 SUM= 11.040 DEL= 0.133E-01 STEP 52 SUM= 11.018 DEL= -0.216E-01 STEP 53 SUM= 11.014 DEL= -0.412E-02 STEP 54 SUM= 11.009 DEL= -0.537E-02 STEP 55 SUM= 11.003 DEL= -0.502E-02 STEP 56 SUM= 10.999 DEL= -0.411E-02 STEP 57 SUM= 10.999 DEL= -0.400E-03 STEP 58 SUM= 10.998 DEL= -0.113E-02 STEP 59 SUM= 10.997 DEL= -0.408E-03 STEP 60 SUM= 10.997 DEL= -0.389E-03 STEP 61 SUM= 10.997 DEL= 0.929E-05 STEP 62 SUM= 10.997 DEL= -0.166E-03 STEP 63 SUM= 10.997 DEL= -0.430E-04 STEP 64 SUM= 10.997 DEL= -0.485E-04 STEP 65 SUM= 10.997 DEL= -0.155E-04 STEP 66 SUM= 10.997 DEL= -0.171E-04 STEP 67 SUM= 10.997 DEL= -0.695E-07 STEP 68 SUM= 10.997 DEL= -0.474E-05 STEP 69 SUM= 10.997 DEL= -0.160E-07 STEP 70 SUM= 10.997 DEL= -0.897E-06 STEP 71 SUM= 10.997 DEL= -0.226E-06 STEP 72 SUM= 10.997 DEL= -0.185E-06 STEP 73 SUM= 10.997 DEL= -0.245E-07 STEP 74 SUM= 10.997 DEL= -0.351E-07 STEP 75 SUM= 10.997 DEL= -0.131E-07 STEP 76 SUM= 10.997 DEL= -0.173E-07 STEP 77 SUM= 10.997 DEL= -0.125E-07 STEP 78 SUM= 10.997 DEL= -0.421E-08 STEP 79 SUM= 10.997 DEL= -0.457E-08 STEP 80 SUM= 10.997 DEL= -0.413E-09 STEP 81 SUM= 10.997 DEL= -0.417E-10 STEP 82 SUM= 10.997 DEL= -0.175E-09 STEP 83 SUM= 10.997 DEL= -0.824E-11 STEP 84 SUM= 10.997 DEL= -0.352E-10 STEP 85 SUM= 10.997 DEL= -0.183E-11 STEP 86 SUM= 10.997 DEL= -0.588E-11 STEP 87 SUM= 10.997 DEL= -0.387E-12 STEP 88 SUM= 10.997 DEL= -0.593E-12 STEP 89 SUM= 10.997 DEL= -0.197E-12 STEP 90 SUM= 10.997 DEL= -0.195E-12 STEP 91 SUM= 10.997 DEL= 0.533E-14 STEP 92 SUM= 10.997 DEL= -0.533E-14 FINAL SUM= 10.997 CPTS: 2.050 5.705 0.755 2.486 GRA=-0.13E-07 0.23E-07 0.89E-08 0.13E-07-0.12E-07-0.37E-08-0.15E-07-0.19E-07 GRA=-0.21E-07 0.21E-07 0.27E-08-0.26E-08 0.87E-08 0.39E-07 0.94E-08 0.63E-08 GRA=-0.69E-08-0.32E-09 0.79E-08-0.28E-08 0.12E-07 0.23E-07-0.65E-08 0.13E-07 GRA= 0.12E-07 0.94E-08-0.56E-08 0.35E-08-0.55E-08-0.84E-08 0.11E-07-0.19E-07 GRA= 0.14E-07 0.13E-07 0.21E-08 0.76E-08 0.78E-08-0.82E-08 0.67E-08 0.86E-08 GRA= 0.13E-07 0.54E-10-0.46E-09 0.88E-08-0.25E-08 0.39E-08-0.13E-08 0.73E-09 GRA=-0.22E-08-0.32E-07-0.90E-08-0.12E-07-0.12E-07-0.13E-07 0.11E-07 0.26E-08 GRA= 0.20E-08-0.13E-07 0.58E-08 0.12E-07-0.62E-08-0.28E-07-0.55E-08 0.23E-08 GRA= 0.83E-08 0.13E-07-0.11E-07-0.88E-08-0.13E-07 0.27E-08-0.31E-08 0.91E-08 GRA=-0.11E-07-0.77E-08-0.15E-08-0.23E-08 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.008 0.059 -0.998 P: 53.495 2.810 8.587 D: 1.068 2) U: -0.023 -0.005 -1.000 P: 53.298 2.822 5.185 D: 0.713 3) U: 0.042 0.007 -0.999 P: 53.501 2.898 1.739 D: 0.243 4) U: 0.092 -0.010 -0.996 P: 53.587 2.867 -1.615 D: 0.525 5) U: 0.141 0.017 -0.990 P: 54.119 2.770 -5.058 D: 0.469 6) U: 0.122 0.012 -0.992 P: 54.672 3.047 -8.142 D: 0.556 7) U: 0.080 -0.008 -0.997 P: 54.750 3.272 -11.152 D: 0.790 8) U: 0.109 -0.060 -0.992 P: 54.892 2.858 -14.391 D: 0.556 9) U: 0.058 -0.055 -0.997 P: 55.459 2.660 -17.806 D: 0.533 10) U: 0.051 -0.057 -0.997 P: 55.334 2.346 -21.126 D: 0.269 11) U: 0.050 0.010 -0.999 P: 55.438 2.174 -24.464 D: 0.765 12) U: -0.010 0.041 -0.999 P: 55.785 2.256 -27.847 D: 0.580 13) U: -0.011 0.039 -0.999 P: 55.455 2.620 -30.992 D: 0.374 14) U: -0.038 0.001 -0.999 P: 55.267 2.598 -34.427 D: 0.626 15) U: -0.038 -0.008 -0.999 P: 55.241 2.355 -37.856 D: 0.185 16) U: -0.017 -0.019 -1.000 P: 55.126 2.427 -40.975 D: 0.690 17) U: -0.024 -0.030 -0.999 P: 54.897 2.554 -43.965 D: 1.385 18) U: -0.043 -0.061 -0.997 P: 54.854 1.927 -47.440 D: 0.671 19) U: -0.036 -0.044 -0.998 P: 54.781 1.895 -50.664 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) AA 2 -1.57 0.03 4.07 0.89 2 0 2) TA 3 -2.19 -0.16 8.34 -3.46 4 -30 3) GA 4 -1.60 -0.02 6.01 1.50 1 11 4) GA 5 -1.58 0.04 5.32 0.64 1 2 5) AA 6 -1.64 0.15 0.43 -1.47 2 22 6) TA 7 -1.63 0.07 4.60 2.30 4 -30 7) GA 8 -1.74 0.18 4.74 -0.02 1 12 8) AA 9 -1.27 0.30 6.03 -4.65 2 17 9) GA 10 -1.65 0.20 0.15 -2.21 1 8 10) TA 11 -1.33 0.07 -1.76 -1.14 4 -21 11) CA 12 -1.15 0.04 -2.39 2.76 3 -12 12) AA 13 -0.90 0.37 -1.82 0.34 2 30 13) TA 14 -0.73 -0.04 0.15 1.62 4 -32 14) AA 15 -0.93 0.05 -0.83 -2.37 2 27 15) GA 16 -0.44 0.38 0.23 -0.90 1 3 16) GA 17 -0.51 0.46 3.69 -3.03 1 2 17) AA 18 -0.46 0.56 6.83 -7.57 2 17 18) GA 19 -0.59 0.28 1.86 -6.94 1 4 19) AA 20 -0.13 0.60 3.84 -5.73 2 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) TB 40 -1.78 -0.13 -2.77 -4.86 4 0 2) AB 39 -1.35 -0.05 -0.34 -2.44 2 30 3) CB 38 -1.53 -0.11 2.91 -0.60 3 -11 4) CB 37 -1.79 -0.23 2.66 -3.52 3 -2 5) TB 36 -1.43 -0.33 9.03 -6.71 4 -22 6) AB 35 -1.63 -0.15 3.64 -3.30 2 30 7) CB 34 -1.79 -0.50 -0.37 -0.94 3 -12 8) TB 33 -1.75 -0.22 -1.36 -3.57 4 -17 9) CB 32 -1.89 -0.36 0.96 -3.85 3 -8 10) AB 31 -1.62 -0.07 1.53 -1.08 2 21 11) GB 30 -1.49 -0.08 3.05 -1.30 1 12 12) TB 29 -1.40 -0.43 6.80 -2.80 4 -30 13) AB 28 -1.39 -0.26 3.47 -4.41 2 32 14) TB 27 -1.02 -0.34 7.00 -2.04 4 -27 15) CB 26 -0.92 -0.45 5.36 2.39 3 -3 16) CB 25 -0.95 -0.52 2.08 -1.13 3 -2 17) TB 24 -1.31 -0.84 -6.31 -1.30 4 -17 18) CB 23 -0.58 -0.41 -5.09 -4.26 3 -4 19) TB 22 -1.10 -0.47 -6.64 -3.27 4 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) A 2-T 40 -1.68 0.08 0.65 2.87 2 0 2) T 3-A 39 -1.77 -0.06 4.00 -0.51 4 -30 3) G 4-C 38 -1.57 0.05 4.46 1.05 1 11 4) G 5-C 37 -1.69 0.14 3.99 2.08 1 2 5) A 6-T 36 -1.53 0.24 4.73 2.62 2 22 6) T 7-A 35 -1.63 0.11 4.12 2.80 4 -30 7) G 8-C 34 -1.76 0.34 2.19 0.46 1 12 8) A 9-T 33 -1.51 0.26 2.34 -0.54 2 17 9) G 10-C 32 -1.77 0.28 0.55 0.82 1 8 10) T 11-A 31 -1.48 0.07 -0.11 -0.03 4 -21 11) C 12-G 30 -1.32 0.06 0.33 2.03 3 -12 12) A 13-T 29 -1.15 0.40 2.49 1.57 2 30 13) T 14-A 28 -1.06 0.11 1.81 3.01 4 -32 14) A 15-T 27 -0.98 0.19 3.08 -0.17 2 27 15) G 16-C 26 -0.68 0.41 2.79 -1.64 1 3 16) G 17-C 25 -0.73 0.49 2.88 -0.95 1 2 17) A 18-T 24 -0.89 0.70 0.26 -3.13 2 17 18) G 19-C 23 -0.59 0.34 -1.62 -1.34 1 4 19) A 20-T 22 -0.61 0.53 -1.40 -1.23 2 0 Average: -1.28 0.25 1.98 0.51 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) A 2-T 40 0.21 -0.10 0.14 6.84 -3.97 4.52 2 0 2) T 3-A 39 -0.84 -0.21 -0.39 8.68 -5.90 -5.21 4 -30 3) G 4-C 38 -0.08 -0.13 -0.09 3.09 0.90 -0.74 1 11 4) G 5-C 37 0.21 -0.19 0.04 2.65 -2.87 -3.81 1 2 5) A 6-T 36 -0.21 -0.18 -0.05 -8.60 -8.18 4.14 2 22 6) T 7-A 35 -0.00 -0.08 0.34 0.96 -1.00 -4.33 4 -30 7) G 8-C 34 0.06 -0.32 0.64 5.11 -0.96 -7.11 1 12 8) A 9-T 33 0.48 0.08 0.08 7.39 -8.22 -1.21 2 17 9) G 10-C 32 0.24 -0.15 0.26 -0.80 -6.06 -3.14 1 8 10) T 11-A 31 0.29 0.00 0.31 -3.29 -2.22 -2.18 4 -21 11) C 12-G 30 0.34 -0.04 0.70 -5.43 1.46 0.36 3 -12 12) A 13-T 29 0.50 -0.06 0.07 -8.63 -2.46 -3.28 2 30 13) T 14-A 28 0.66 -0.31 0.18 -3.31 -2.79 -4.89 4 -32 14) A 15-T 27 0.09 -0.29 0.17 -7.83 -4.41 -4.98 2 27 15) G 16-C 26 0.49 -0.06 -0.01 -5.13 1.48 0.46 1 3 16) G 17-C 25 0.44 -0.06 -0.14 1.61 -4.16 2.13 1 2 17) A 18-T 24 0.85 -0.28 0.04 13.14 -8.87 0.84 2 17 18) G 19-C 23 -0.01 -0.14 -0.23 6.96 -11.20 -2.64 1 4 19) A 20-T 22 0.97 0.14 -0.25 10.48 -9.01 -9.02 2 0 Average: 0.25 -0.13 0.10 1.26 -4.13 -2.11 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A 2/T 3 -0.74 -0.34 3.14 5.00 -8.31 23.19 7 3) T 3/G 4 0.76 0.20 3.60 -4.28 8.20 40.39 -9 4) G 4/G 5 -0.12 0.08 3.42 -1.96 1.92 33.23 1 5) G 5/A 6 0.11 0.13 3.44 -2.07 -0.53 43.43 2 6) A 6/T 7 -0.15 -0.30 3.33 3.05 3.55 25.53 7 7) T 7/G 8 -0.27 0.37 3.15 -1.99 -0.67 38.99 -9 8) G 8/A 9 0.79 -0.00 2.97 4.64 -3.98 37.19 2 9) A 9/G 10 -0.65 -0.13 3.55 -6.47 5.36 33.68 3 10) G 10/T 11 0.52 -0.39 3.34 -1.66 1.34 35.99 6 11) T 11/C 12 0.13 -0.13 3.54 -2.26 7.35 34.55 -2 12) C 12/A 13 0.30 0.61 3.08 4.24 -1.30 40.13 9 13) A 13/T 14 0.13 -0.79 3.22 1.99 1.16 26.95 7 14) T 14/A 15 -0.33 0.16 3.43 -2.79 -5.92 36.38 10 15) A 15/G 16 0.69 0.50 3.34 0.56 1.67 42.75 3 16) G 16/G 17 -0.19 0.06 3.05 4.29 -1.04 36.33 1 17) G 17/A 18 -0.12 0.29 3.08 2.83 -3.79 38.65 2 18) A 18/G 19 0.15 -0.65 3.37 -4.52 2.63 24.55 3 19) G 19/A 20 0.40 0.45 3.21 1.08 0.65 46.64 2 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 40/A 39 0.32 0.23 3.67 3.16 6.38 32.91 7 3) A 39/C 38 -0.01 -0.13 3.30 1.31 -1.39 35.92 9 4) C 38/C 37 -0.40 -0.13 3.29 -1.52 -5.69 36.30 -1 5) C 37/T 36 0.53 -0.12 3.53 9.18 -4.78 35.48 -2 6) T 36/A 35 -0.36 0.40 2.94 -6.51 3.63 33.99 7 7) A 35/C 34 -0.33 -0.61 2.86 -6.15 0.71 41.77 9 8) C 34/T 33 0.36 0.40 3.53 2.36 -3.27 31.29 -2 9) T 33/C 32 -0.41 -0.10 3.37 1.72 -3.20 35.60 -3 10) C 32/A 31 0.48 0.55 3.30 0.83 2.49 35.03 -6 11) A 31/G 30 0.08 0.09 3.15 -0.12 -3.67 32.01 2 12) G 30/T 29 0.14 -0.62 3.71 7.43 -2.61 43.77 -9 13) T 29/A 28 -0.03 0.54 3.10 -3.33 -1.49 28.55 7 14) A 28/T 27 0.24 -0.14 3.44 1.73 4.30 36.47 10 15) T 27/C 26 0.30 -0.27 3.52 -2.14 4.23 37.31 -3 16) C 26/C 25 -0.14 -0.05 3.19 -2.44 -4.60 34.65 -1 17) C 25/T 24 -0.53 -0.51 2.90 -8.70 -0.93 39.94 -2 18) T 24/C 23 1.01 0.80 3.63 1.66 -4.95 28.03 -3 19) C 23/T 22 -0.59 -0.18 3.24 -2.45 1.54 53.02 -2 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A 2/T 3 -0.21 -0.29 3.40 4.08 -7.34 28.05 7 3) T 3/G 4 0.37 0.16 3.45 -1.48 4.79 38.15 -9 4) G 4/G 5 -0.26 0.11 3.35 -1.74 3.80 34.77 1 5) G 5/A 6 0.32 0.13 3.48 3.55 2.13 39.45 2 6) A 6/T 7 -0.25 -0.35 3.13 -1.73 -0.04 29.76 7 7) T 7/G 8 -0.30 0.49 3.00 -4.07 -0.69 40.38 -9 8) G 8/A 9 0.58 -0.20 3.25 3.50 -0.35 34.24 2 9) A 9/G 10 -0.53 -0.01 3.46 -2.38 4.28 34.64 3 10) G 10/T 11 0.50 -0.47 3.32 -0.42 -0.58 35.51 6 11) T 11/C 12 0.10 -0.11 3.34 -1.19 5.51 33.28 -2 12) C 12/A 13 0.22 0.62 3.39 5.84 0.65 41.95 9 13) A 13/T 14 0.05 -0.67 3.16 -0.67 1.33 27.75 7 14) T 14/A 15 -0.04 0.15 3.44 -0.53 -5.11 36.43 10 15) A 15/G 16 0.49 0.38 3.43 -0.79 -1.28 40.03 3 16) G 16/G 17 -0.16 0.05 3.12 0.93 1.78 35.49 1 17) G 17/A 18 -0.32 0.40 2.99 -2.93 -1.43 39.30 2 18) A 18/G 19 0.58 -0.73 3.50 -1.43 3.79 26.29 3 19) G 19/A 20 -0.10 0.32 3.22 -0.69 -0.44 49.83 2 Average: 0.06 -0.00 3.30 -0.12 0.60 35.85 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A 2/T 3 -0.65 -0.74 3.13 5.46 -5.69 23.41 7 3) T 3/G 4 0.86 -0.73 3.80 -3.60 12.76 39.96 -9 4) G 4/G 5 -0.18 -0.50 3.55 -2.59 5.15 32.77 1 5) G 5/A 6 0.12 -0.88 3.53 -1.42 1.74 43.29 2 6) A 6/T 7 -0.25 -0.90 3.36 2.77 4.57 25.56 7 7) T 7/G 8 -0.42 -0.49 3.23 -2.84 2.47 38.68 -9 8) G 8/A 9 0.73 -0.65 3.07 6.02 -0.19 36.75 2 9) A 9/G 10 -0.51 -0.81 3.71 -4.30 7.03 33.87 3 10) G 10/T 11 0.54 -1.36 3.32 -0.54 0.80 36.02 6 11) T 11/C 12 0.07 -1.02 3.57 -2.75 5.92 34.66 -2 12) C 12/A 13 0.06 -0.21 3.11 3.13 -2.55 40.25 9 13) A 13/T 14 -0.01 -1.22 3.20 1.48 0.74 26.97 7 14) T 14/A 15 -0.29 -0.35 3.41 -2.43 -6.01 36.44 10 15) A 15/G 16 0.57 -0.05 3.33 1.68 1.34 42.72 3 16) G 16/G 17 -0.38 -0.13 3.09 5.36 0.28 36.13 1 17) G 17/A 18 -0.21 0.27 3.10 6.13 -0.06 38.04 2 18) A 18/G 19 0.44 -0.62 3.42 -1.34 4.46 24.71 3 19) G 19/A 20 0.31 0.27 3.18 5.95 2.76 46.28 2 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) T 40/A 39 0.01 -1.19 3.56 0.99 -7.16 32.97 7 3) A 39/C 38 -0.16 -0.68 3.39 0.30 2.32 35.84 9 4) C 38/C 37 -0.61 -0.77 3.39 -2.74 7.30 36.11 -1 5) C 37/T 36 -0.04 -0.54 3.68 5.78 8.17 35.93 -2 6) T 36/A 35 -0.70 -0.94 3.02 -9.16 0.22 33.21 7 7) A 35/C 34 -0.62 -0.53 2.91 -7.31 0.72 41.52 9 8) C 34/T 33 0.03 -1.42 3.54 1.20 2.59 31.36 -2 9) T 33/C 32 -0.82 -1.03 3.40 -0.61 3.08 35.65 -3 10) C 32/A 31 0.19 -1.50 3.36 -0.68 -1.62 35.03 -6 11) A 31/G 30 -0.06 -0.83 3.27 -0.81 4.94 31.84 2 12) G 30/T 29 -0.23 -0.19 3.78 5.67 6.11 43.85 -9 13) T 29/A 28 -0.39 -0.96 3.18 -5.00 3.97 28.23 7 14) A 28/T 27 -0.17 -0.29 3.43 -0.55 -0.82 36.51 10 15) T 27/C 26 0.07 0.04 3.54 -1.94 -0.04 37.08 -3 16) C 26/C 25 -0.36 -0.34 3.25 -1.94 6.66 34.59 -1 17) C 25/T 24 -0.96 -0.38 2.91 -9.03 -0.53 39.87 -2 18) T 24/C 23 0.51 -1.62 3.55 0.29 2.09 28.14 -3 19) C 23/T 22 -1.09 -0.85 3.12 -5.67 -6.61 52.53 -2 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) A 2/T 3 -0.31 -0.95 3.34 3.23 -6.44 28.20 7 3) T 3/G 4 0.35 -0.72 3.60 -1.50 7.59 38.10 -9 4) G 4/G 5 -0.39 -0.64 3.48 -2.68 6.22 34.40 1 5) G 5/A 6 0.04 -0.71 3.60 2.18 4.95 39.69 2 6) A 6/T 7 -0.48 -0.92 3.19 -3.19 2.39 29.27 7 7) T 7/G 8 -0.52 -0.52 3.07 -5.02 1.48 40.11 -9 8) G 8/A 9 0.41 -1.03 3.33 3.56 1.12 33.94 2 9) A 9/G 10 -0.67 -0.92 3.56 -2.42 5.09 34.87 3 10) G 10/T 11 0.36 -1.43 3.34 -0.58 -0.41 35.52 6 11) T 11/C 12 -0.00 -0.92 3.42 -1.77 5.44 33.20 -2 12) C 12/A 13 -0.08 -0.22 3.44 4.33 1.80 42.22 9 13) A 13/T 14 -0.20 -1.09 3.19 -1.82 2.24 27.64 7 14) T 14/A 15 -0.23 -0.32 3.42 -1.60 -3.37 36.57 10 15) A 15/G 16 0.32 -0.02 3.43 -0.12 0.62 39.79 3 16) G 16/G 17 -0.37 -0.23 3.16 1.75 3.51 35.38 1 17) G 17/A 18 -0.59 -0.06 3.03 -1.45 -0.23 38.86 2 18) A 18/G 19 0.49 -1.11 3.49 -0.51 3.29 26.53 3 19) G 19/A 20 -0.36 -0.33 3.21 0.40 -2.23 49.73 2 Average: -0.12 -0.67 3.35 -0.40 1.84 35.78 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) A 2/T 3 -0.12 -0.14 0.73 -3.96 0.19 4.03 3.41 7 3) T 3/G 4 0.17 0.06 -1.95 3.24 0.18 3.78 3.45 -9 4) G 4/G 5 -0.14 0.01 -1.27 2.77 0.14 3.05 3.36 1 5) G 5/A 6 0.16 0.02 2.81 1.58 0.17 3.23 3.49 2 6) A 6/T 7 -0.16 -0.22 -1.12 -0.22 0.27 1.14 3.15 7 7) T 7/G 8 -0.17 0.27 -2.13 1.65 0.31 2.70 3.02 -9 8) G 8/A 9 0.32 -0.12 3.35 0.65 0.35 3.41 3.27 2 9) A 9/G 10 -0.28 -0.03 -0.60 2.92 0.28 2.98 3.47 3 10) G 10/T 11 0.21 -0.26 0.25 0.28 0.33 0.37 3.34 6 11) T 11/C 12 -0.05 -0.10 -1.64 3.45 0.11 3.82 3.34 -2 12) C 12/A 13 0.05 0.28 3.68 1.12 0.28 3.84 3.40 9 13) A 13/T 14 -0.04 -0.38 0.01 -0.12 0.38 0.12 3.18 7 14) T 14/A 15 -0.12 0.07 -1.80 -1.93 0.14 2.64 3.44 10 15) A 15/G 16 0.19 0.16 -0.50 0.20 0.25 0.54 3.44 3 16) G 16/G 17 -0.12 -0.02 0.84 1.09 0.12 1.37 3.12 1 17) G 17/A 18 -0.17 0.20 -0.31 0.75 0.26 0.81 3.00 2 18) A 18/G 19 0.29 -0.38 0.44 2.00 0.47 2.05 3.53 3 19) G 19/A 20 -0.07 0.13 -0.90 -0.56 0.15 1.06 3.23 2 Overall axis bend ... UU= 6.39 PP= 2.15 Duplex Offset L.Dir ... wrt end-to-end vector 1) A 2 0.00 0.00 2) T 3 0.28 76.68 3) G 4 0.24 76.45 4) G 5 0.25 48.46 5) A 6 0.37 98.86 6) T 7 0.95 69.44 7) G 8 1.13 18.87 8) A 9 0.98 0.35 9) G 10 1.41 -19.80 10) T 11 1.19 -45.07 11) C 12 1.23 -74.04 12) A 13 1.50 -120.18 13) T 14 1.18 -167.74 14) A 15 0.95 148.56 15) G 16 0.78 114.61 16) G 17 0.67 63.28 17) A 18 0.61 -5.53 18) G 19 0.14 41.52 19) A 20 0.00 0.00 Path length= 59.63 End-to-end= 59.27 Shortening= 0.59 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)AA 2 13.29 -18.18 188.56 18.77 C3'-exo 110.3 101.6 108.9 2)TA 3 35.78 -26.08 138.75 36.18 C1'-exo 108.7 99.0 107.4 3)GA 4 28.07 -21.34 141.38 28.31 C1'-exo 108.9 101.0 107.9 4)GA 5 29.95 -19.10 129.14 31.51 C1'-exo 108.6 100.1 108.6 5)AA 6 20.39 -17.93 151.42 20.91 C2'-endo 108.9 101.3 109.1 6)TA 7 33.37 -23.30 133.79 34.55 C1'-exo 107.0 99.6 108.6 7)GA 8 26.46 -23.99 155.93 27.15 C2'-endo 110.0 100.7 107.9 8)AA 9 31.42 -24.98 144.59 31.72 C2'-endo 108.8 99.9 107.7 9)GA 10 28.61 -26.91 157.56 29.86 C2'-endo 109.1 99.6 108.3 10)TA 11 26.17 -10.16 109.66 32.14 C1'-exo 109.2 100.5 109.1 11)CA 12 28.25 -19.33 132.89 29.28 C1'-exo 108.5 100.2 109.1 12)AA 13 26.64 -22.82 149.82 27.17 C2'-endo 108.9 100.1 108.4 13)TA 14 34.98 -25.57 137.73 35.66 C1'-exo 107.3 99.4 107.9 14)AA 15 26.31 -16.01 126.34 28.06 C1'-exo 109.0 100.8 108.5 15)GA 16 27.71 -25.94 157.04 28.84 C2'-endo 108.7 100.3 108.0 16)GA 17 20.83 -22.43 169.31 23.34 C2'-endo 109.4 100.9 108.3 17)AA 18 18.54 -22.39 178.98 22.86 C2'-endo 110.1 100.9 108.8 18)GA 19 35.74 -20.89 124.69 38.29 C1'-exo 107.3 99.5 107.9 19)AA 20 27.32 -27.98 166.10 29.63 C2'-endo 109.2 100.3 107.3 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)AA 2 -85.21 45.77 134.44 122.85 -66.63 -112.80 -139.71 2)TA 3 -96.86 85.14 129.84 -171.07 -112.79 -48.45 175.14 3)GA 4 -104.61 31.25 127.20 -176.70 -105.92 -87.24 163.54 4)GA 5 -131.88 84.92 125.24 -168.23 -95.86 -85.79 -175.19 5)AA 6 -117.06 63.80 125.48 -171.67 -86.36 -72.73 177.99 6)TA 7 -108.67 53.50 123.73 -175.16 -125.16 -56.55 168.23 7)GA 8 -119.22 52.72 135.23 -175.79 -89.54 -59.95 -178.08 8)AA 9 -101.06 38.66 132.30 -179.21 -114.43 -62.26 176.53 9)GA 10 -113.38 53.22 136.08 177.19 -88.21 -94.39 -177.62 10)TA 11 -129.08 75.26 111.31 -166.19 -94.02 -73.08 169.21 11)CA 12 -123.70 62.53 122.89 -161.30 -110.41 -64.82 169.01 12)AA 13 -106.77 52.36 130.96 -176.24 -96.78 -41.08 176.25 13)TA 14 -103.49 20.79 129.27 -179.71 -163.25 6.53 116.83 14)AA 15 -123.81 37.41 119.19 179.77 -86.19 -79.95 -172.52 15)GA 16 -99.64 55.94 134.34 154.90 -97.01 -91.96 -146.69 16)GA 17 -87.73 72.01 135.03 146.77 -87.17 -81.91 -144.92 17)AA 18 -81.13 59.25 138.28 175.60 -97.71 -49.50 159.22 18)GA 19 -111.56 50.87 118.96 -166.01 -122.00 -95.69 164.37 19)AA 20 -112.85 87.74 135.02 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)TB 40 27.94 -9.90 106.92 35.85 O1'-endo 107.8 100.1 108.4 2)AB 39 30.98 -20.94 132.08 32.19 C1'-exo 107.8 100.3 108.9 3)CB 38 22.26 -6.74 103.56 30.15 O1'-endo 107.3 101.3 109.6 4)CB 37 22.88 -16.90 137.21 23.54 C1'-exo 108.8 101.3 110.3 5)TB 36 33.48 -26.00 143.03 33.67 C1'-exo 107.9 100.2 107.3 6)AB 35 34.44 -31.78 155.93 35.64 C2'-endo 107.5 99.2 107.2 7)CB 34 29.59 -29.00 161.52 31.34 C2'-endo 108.6 99.9 107.5 8)TB 33 22.90 -12.63 121.66 25.13 C1'-exo 109.6 101.3 109.0 9)CB 32 26.25 -14.51 121.38 28.95 C1'-exo 108.7 100.8 109.1 10)AB 31 30.80 -16.08 119.19 34.65 C1'-exo 108.6 99.1 109.1 11)GB 30 24.55 -17.30 134.39 25.46 C1'-exo 108.4 100.7 109.2 12)TB 29 34.76 -19.95 123.60 37.71 C1'-exo 107.6 98.7 108.9 13)AB 28 26.10 -23.37 153.63 26.84 C2'-endo 109.1 100.2 108.2 14)TB 27 22.21 -18.09 144.74 22.71 C2'-endo 109.2 100.6 109.3 15)CB 26 28.15 -28.54 164.83 30.31 C2'-endo 109.1 100.3 107.7 16)CB 25 26.48 -23.40 153.08 27.05 C2'-endo 109.3 100.6 107.9 17)TB 24 28.02 -27.01 160.37 29.43 C2'-endo 108.9 100.5 107.5 18)CB 23 28.28 -27.63 161.42 29.89 C2'-endo 108.7 100.3 107.7 19)TB 22 38.10 -27.25 136.87 38.73 C1'-exo 107.4 98.8 107.2 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)TB 40 -145.70 87.55 100.23 ...... ...... ...... ...... 2)AB 39 -132.26 75.42 123.99 -153.91 -107.18 -74.72 145.31 3)CB 38 -137.16 97.30 107.98 -164.16 -91.39 -81.02 162.59 4)CB 37 -116.43 40.03 126.11 -173.51 -86.76 -106.34 168.89 5)TB 36 -93.66 35.28 130.59 -178.89 -127.78 -44.72 163.93 6)AB 35 -103.63 74.28 141.01 -179.26 -100.59 -55.36 -178.45 7)CB 34 -103.96 27.95 140.41 162.75 -97.48 -86.68 -165.63 8)TB 33 -114.99 44.07 116.86 166.44 -78.09 -51.87 -156.62 9)CB 32 -121.28 70.27 117.31 179.27 -82.21 -65.60 -179.36 10)AB 31 -112.67 56.46 118.40 165.99 -94.21 -85.20 -168.11 11)GB 30 -134.12 87.87 124.52 -170.25 -83.92 -80.86 -179.77 12)TB 29 -107.64 63.78 120.93 -162.76 -122.28 -95.08 159.29 13)AB 28 -106.40 51.05 131.95 173.92 -85.42 -81.81 -178.56 14)TB 27 -108.47 51.26 127.56 174.42 -91.46 -65.31 -174.48 15)CB 26 -92.18 43.99 142.08 -174.15 -133.13 -41.44 159.97 16)CB 25 -90.55 58.35 131.42 161.45 -91.80 -63.62 -165.77 17)TB 24 -88.71 48.40 135.70 148.08 -81.03 -74.66 -157.74 18)CB 23 -98.07 59.96 138.29 135.74 -70.61 -91.22 -120.32 19)TB 22 -125.02 64.83 127.25 176.38 -99.14 -83.87 -160.43