ID code: 1CKT, PD0051 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 2 May 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) CA 101 0.047 1 : 2) CA 102 0.020 1 : 3) U+A 103 0.056 1 : 4) CA 104 0.018 1 : 5) TA 105 0.026 1 : 6) CA 106 0.017 1 : 7) TA 107 0.045 1 : 8) GA 108 0.039 1 : 9) GA 109 0.038 1 : 10) AA 110 0.023 1 : 11) CA 111 0.033 1 : 12) CA 112 0.015 1 : 13) TA 113 0.033 1 : 14) TA 114 0.034 1 : 15) CA 115 0.018 1 : 16) CA 116 0.035 2 : 1) GB 216 0.044 2 : 2) GB 215 0.092 2 : 3) AB 214 0.033 2 : 4) GB 213 0.025 2 : 5) AB 212 0.018 2 : 6) GB 211 0.021 2 : 7) AB 210 0.031 2 : 8) CB 209 0.027 2 : 9) CB 208 0.046 2 : 10) TB 207 0.047 2 : 11) GB 206 0.026 2 : 12) GB 205 0.043 2 : 13) AB 204 0.020 2 : 14) AB 203 0.033 2 : 15) GB 202 0.043 2 : 16) GB 201 0.024 Strand= 2 Nucleo= 32 Atoms = 649 Units = 32 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 16 levels ... Strand 1 has 16 bases (5'-3'): CCUCTCTGGACCTTCC Strand 2 has 16 bases (3'-5'): GGAGAGACCTGGAAGG FIRST SUM= 100.152 CPTS: 14.007 4.341 39.307 42.496 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 64 STEP 1 SUM= 100.152 DEL= 0.000E+00 STEP 2 SUM= 84.070 DEL= -0.161E+02 STEP 3 SUM= 78.580 DEL= -0.549E+01 STEP 4 SUM= 71.505 DEL= -0.707E+01 STEP 5 SUM= 63.860 DEL= -0.764E+01 STEP 6 SUM= 54.982 DEL= -0.888E+01 STEP 7 SUM= 59.997 DEL= 0.501E+01 STEP 8 SUM= 51.517 DEL= -0.848E+01 STEP 9 SUM= 49.770 DEL= -0.175E+01 STEP 10 SUM= 48.350 DEL= -0.142E+01 STEP 11 SUM= 46.811 DEL= -0.154E+01 STEP 12 SUM= 45.206 DEL= -0.160E+01 STEP 13 SUM= 44.422 DEL= -0.784E+00 STEP 14 SUM= 43.739 DEL= -0.683E+00 STEP 15 SUM= 42.666 DEL= -0.107E+01 STEP 16 SUM= 41.260 DEL= -0.141E+01 STEP 17 SUM= 40.833 DEL= -0.426E+00 STEP 18 SUM= 40.239 DEL= -0.595E+00 STEP 19 SUM= 39.609 DEL= -0.630E+00 STEP 20 SUM= 39.407 DEL= -0.201E+00 STEP 21 SUM= 39.044 DEL= -0.363E+00 STEP 22 SUM= 38.383 DEL= -0.661E+00 STEP 23 SUM= 39.995 DEL= 0.161E+01 STEP 24 SUM= 38.096 DEL= -0.190E+01 STEP 25 SUM= 37.980 DEL= -0.117E+00 STEP 26 SUM= 37.906 DEL= -0.732E-01 STEP 27 SUM= 37.776 DEL= -0.131E+00 STEP 28 SUM= 37.567 DEL= -0.209E+00 STEP 29 SUM= 37.237 DEL= -0.330E+00 STEP 30 SUM= 37.592 DEL= 0.355E+00 STEP 31 SUM= 37.129 DEL= -0.463E+00 STEP 32 SUM= 37.012 DEL= -0.118E+00 STEP 33 SUM= 37.192 DEL= 0.180E+00 STEP 34 SUM= 36.979 DEL= -0.213E+00 STEP 35 SUM= 36.917 DEL= -0.618E-01 STEP 36 SUM= 36.747 DEL= -0.170E+00 STEP 37 SUM= 36.863 DEL= 0.116E+00 STEP 38 SUM= 36.654 DEL= -0.209E+00 STEP 39 SUM= 36.716 DEL= 0.624E-01 STEP 40 SUM= 36.619 DEL= -0.971E-01 STEP 41 SUM= 36.571 DEL= -0.480E-01 STEP 42 SUM= 36.530 DEL= -0.416E-01 STEP 43 SUM= 36.462 DEL= -0.679E-01 STEP 44 SUM= 36.362 DEL= -0.992E-01 STEP 45 SUM= 36.203 DEL= -0.159E+00 STEP 46 SUM= 35.998 DEL= -0.205E+00 STEP 47 SUM= 36.049 DEL= 0.507E-01 STEP 48 SUM= 35.908 DEL= -0.142E+00 STEP 49 SUM= 35.911 DEL= 0.318E-02 STEP 50 SUM= 35.863 DEL= -0.479E-01 STEP 51 SUM= 35.884 DEL= 0.215E-01 STEP 52 SUM= 35.848 DEL= -0.358E-01 STEP 53 SUM= 35.841 DEL= -0.770E-02 STEP 54 SUM= 35.833 DEL= -0.751E-02 STEP 55 SUM= 35.832 DEL= -0.119E-02 STEP 56 SUM= 35.829 DEL= -0.289E-02 STEP 57 SUM= 35.830 DEL= 0.126E-02 STEP 58 SUM= 35.827 DEL= -0.303E-02 STEP 59 SUM= 35.828 DEL= 0.215E-03 STEP 60 SUM= 35.827 DEL= -0.105E-02 STEP 61 SUM= 35.827 DEL= 0.341E-03 STEP 62 SUM= 35.826 DEL= -0.686E-03 STEP 63 SUM= 35.826 DEL= -0.354E-04 STEP 64 SUM= 35.826 DEL= -0.147E-03 STEP 65 SUM= 35.826 DEL= 0.220E-03 STEP 66 SUM= 35.826 DEL= -0.263E-03 STEP 67 SUM= 35.826 DEL= 0.319E-05 STEP 68 SUM= 35.826 DEL= -0.158E-04 STEP 69 SUM= 35.826 DEL= -0.815E-05 STEP 70 SUM= 35.826 DEL= -0.368E-05 STEP 71 SUM= 35.826 DEL= -0.478E-05 STEP 72 SUM= 35.826 DEL= 0.212E-05 STEP 73 SUM= 35.826 DEL= -0.407E-05 STEP 74 SUM= 35.826 DEL= -0.111E-05 STEP 75 SUM= 35.826 DEL= -0.187E-06 STEP 76 SUM= 35.826 DEL= -0.420E-06 STEP 77 SUM= 35.826 DEL= 0.147E-06 STEP 78 SUM= 35.826 DEL= -0.418E-06 STEP 79 SUM= 35.826 DEL= -0.212E-07 STEP 80 SUM= 35.826 DEL= -0.685E-07 STEP 81 SUM= 35.826 DEL= 0.505E-07 STEP 82 SUM= 35.826 DEL= -0.641E-07 STEP 83 SUM= 35.826 DEL= 0.309E-08 STEP 84 SUM= 35.826 DEL= -0.770E-08 STEP 85 SUM= 35.826 DEL= 0.142E-08 STEP 86 SUM= 35.826 DEL= -0.268E-08 STEP 87 SUM= 35.826 DEL= 0.454E-09 STEP 88 SUM= 35.826 DEL= -0.749E-09 STEP 89 SUM= 35.826 DEL= 0.188E-09 STEP 90 SUM= 35.826 DEL= -0.239E-09 STEP 91 SUM= 35.826 DEL= 0.384E-10 STEP 92 SUM= 35.826 DEL= -0.476E-10 STEP 93 SUM= 35.826 DEL= 0.426E-13 STEP 94 SUM= 35.826 DEL= -0.169E-11 STEP 95 SUM= 35.826 DEL= 0.128E-12 STEP 96 SUM= 35.826 DEL= -0.384E-12 STEP 97 SUM= 35.826 DEL= -0.128E-12 STEP 98 SUM= 35.826 DEL= -0.639E-13 STEP 99 SUM= 35.826 DEL= 0.000E+00 STEP 100 SUM= 35.826 DEL= 0.000E+00 FINAL SUM= 35.826 CPTS: 12.571 9.579 7.551 6.124 GRA= 0.20E-08 0.80E-09 0.31E-08-0.74E-09-0.55E-08 0.10E-08 0.26E-08 0.13E-08 GRA= 0.10E-09 0.11E-07 0.55E-08-0.83E-09-0.17E-08 0.34E-10 0.16E-08-0.50E-08 GRA=-0.10E-07-0.64E-08 0.12E-08-0.20E-08 0.14E-08-0.14E-08 0.35E-08 0.15E-08 GRA= 0.80E-08-0.18E-07-0.24E-08-0.67E-09 0.89E-08 0.13E-07 0.18E-08 0.27E-08 GRA=-0.12E-07-0.11E-08 0.18E-08 0.35E-08 0.25E-08 0.14E-07-0.37E-08 0.37E-08 GRA= 0.11E-07-0.22E-07-0.15E-08 0.16E-08 0.30E-08 0.81E-08 0.18E-08-0.30E-08 GRA=-0.43E-08 0.36E-07-0.18E-08 0.12E-08-0.21E-08-0.15E-07-0.22E-08 0.27E-08 GRA=-0.12E-07-0.27E-07-0.96E-09 0.14E-08 0.10E-07 0.12E-07 0.95E-09 0.55E-08 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.262 -0.445 0.857 P: 13.394 10.603 -0.197 D: 1.259 2) U: 0.258 -0.470 0.844 P: 14.190 9.196 3.203 D: 1.752 3) U: 0.308 -0.453 0.837 P: 15.460 7.822 5.627 D: 0.752 4) U: 0.317 -0.535 0.783 P: 16.670 6.236 8.460 D: 0.486 5) U: 0.321 -0.569 0.757 P: 17.646 4.592 10.719 D: 0.841 6) U: 0.372 -0.573 0.730 P: 18.600 2.522 13.087 D: 1.201 7) U: 0.480 -0.557 0.678 P: 19.853 1.040 15.508 D: 4.445 8) U: 0.427 -0.578 0.696 P: 22.208 -0.749 17.794 D: 16.148 9) U: 0.824 -0.450 0.345 P: 25.236 -4.245 20.403 D: 2.165 10) U: 0.878 -0.362 0.314 P: 27.615 -5.503 21.527 D: 2.288 11) U: 0.932 -0.262 0.252 P: 30.432 -5.862 22.054 D: 0.905 12) U: 0.948 -0.204 0.244 P: 33.892 -6.529 22.869 D: 0.470 13) U: 0.953 -0.166 0.252 P: 37.027 -7.243 23.331 D: 0.404 14) U: 0.964 -0.119 0.236 P: 40.075 -7.653 23.949 D: 1.772 15) U: 0.968 -0.035 0.247 P: 43.200 -8.443 24.954 D: 0.939 16) U: 0.968 -0.017 0.249 P: 46.179 -8.108 25.754 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CA 101 -2.51 0.02 2.30 -3.59 3 0 2) CA 102 -1.96 0.20 -6.81 0.73 3 -3 3) U+A 103 -2.09 0.19 8.29 -1.46 4 -17 4) CA 104 -2.33 0.26 6.15 -2.99 3 -4 5) TA 105 -2.28 0.11 12.71 -6.10 4 -17 6) CA 106 -1.64 0.22 13.62 -8.52 3 -4 7) TA 107 -1.74 0.33 21.12 -7.24 4 -25 8) GA 108 -1.41 1.16 31.53 -22.33 1 11 9) GA 109 -1.61 0.21 4.72 13.31 1 2 10) AA 110 -1.72 0.29 10.62 0.47 2 21 11) CA 111 -1.47 -0.04 13.63 -5.87 3 -6 12) CA 112 -1.46 -0.24 3.55 -1.66 3 -3 13) TA 113 -1.74 -0.23 6.61 -2.43 4 -19 14) TA 114 -1.72 -0.32 6.87 -9.72 4 -18 15) CA 115 -1.28 -0.05 5.21 -6.89 3 -2 16) CA 116 -1.74 -0.11 10.17 -2.64 3 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GB 216 -2.05 -0.01 -0.26 -0.59 1 0 2) GB 215 -1.78 -0.02 5.95 -0.61 1 3 3) AB 214 -2.28 -0.13 3.14 -5.57 2 17 4) GB 213 -2.03 -0.03 7.84 -6.18 1 4 5) AB 212 -1.78 -0.38 10.51 -4.01 2 17 6) GB 211 -1.59 -0.31 15.48 -0.15 1 4 7) AB 210 -1.77 -0.53 11.26 9.84 2 25 8) CB 209 -0.87 -1.23 2.52 15.28 3 -11 9) CB 208 -1.62 -0.38 16.54 -0.26 3 -2 10) TB 207 -2.06 -0.27 5.32 -4.15 4 -21 11) GB 206 -1.43 0.18 -0.84 -8.46 1 6 12) GB 205 -1.19 0.16 8.12 -9.06 1 3 13) AB 204 -1.41 0.14 7.07 -10.70 2 19 14) AB 203 -1.52 0.24 9.36 -8.98 2 18 15) GB 202 -0.88 0.18 11.24 -1.34 1 2 16) GB 201 -1.24 0.05 6.74 -1.74 1 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) C101-G216 -2.28 0.02 1.02 -1.50 3 0 2) C102-G215 -1.87 0.11 -0.43 0.67 3 -3 3) U103-A214 -2.19 0.16 5.72 2.06 4 -17 4) C104-G213 -2.18 0.14 7.00 1.60 3 -4 5) T105-A212 -2.03 0.25 11.61 -1.05 4 -17 6) C106-G211 -1.62 0.27 14.55 -4.19 3 -4 7) T107-A210 -1.75 0.43 16.19 -8.54 4 -25 8) G108-C209 -1.14 1.19 17.02 -18.80 1 11 9) G109-C208 -1.62 0.30 10.63 6.79 1 2 10) A110-T207 -1.89 0.28 7.97 2.31 2 21 11) C111-G206 -1.45 -0.11 6.40 1.29 3 -6 12) C112-G205 -1.32 -0.20 5.83 3.70 3 -3 13) T113-A204 -1.57 -0.18 6.84 4.13 4 -19 14) T114-A203 -1.62 -0.28 8.11 -0.37 4 -18 15) C115-G202 -1.08 -0.11 8.23 -2.78 3 -2 16) C116-G201 -1.49 -0.08 8.45 -0.45 3 0 Average: -1.69 0.14 8.45 -0.95 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) C101-G216 -0.46 0.01 -0.18 2.56 -4.18 2.27 3 0 2) C102-G215 -0.18 0.18 0.31 -12.76 0.13 6.50 3 -3 3) U103-A214 0.19 0.06 -0.56 5.15 -7.03 3.32 4 -17 4) C104-G213 -0.30 0.23 0.08 -1.68 -9.17 -0.51 3 -4 5) T105-A212 -0.50 -0.26 -0.20 2.20 -10.12 -2.71 4 -17 6) C106-G211 -0.05 -0.10 -0.04 -1.86 -8.68 1.91 3 -4 7) T107-A210 0.03 -0.20 0.33 9.86 2.60 -1.34 4 -25 8) G108-C209 -0.54 -0.07 0.04 29.01 -7.06 10.04 1 11 9) G109-C208 0.01 -0.17 -0.47 -11.82 13.05 -5.24 1 2 10) A110-T207 0.35 0.03 0.19 5.30 -3.68 -4.93 2 21 11) C111-G206 -0.04 0.14 -0.31 14.47 -14.33 1.31 3 -6 12) C112-G205 -0.27 -0.08 0.13 -4.57 -10.73 -4.41 3 -3 13) T113-A204 -0.34 -0.09 0.10 -0.46 -13.12 -4.03 4 -19 14) T114-A203 -0.21 -0.08 -0.37 -2.49 -18.70 -4.00 4 -18 15) C115-G202 -0.40 0.12 -0.26 -6.03 -8.23 2.09 3 -2 16) C116-G201 -0.50 -0.06 -0.43 3.43 -4.39 -3.86 3 0 Average: -0.20 -0.02 -0.10 1.89 -6.48 -0.22 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 0.96 0.13 3.99 -10.19 3.08 37.43 -1 3) C102/U103 -0.54 -0.14 2.60 16.92 -4.68 29.49 -3 4) U103/C104 -0.39 -0.04 3.78 -7.76 -1.36 30.19 -2 5) C104/T105 0.04 -0.10 2.82 4.51 -1.74 34.08 -3 6) T105/C106 0.89 -0.03 3.36 -2.42 -2.15 37.95 -2 7) C106/T107 -0.47 0.16 3.27 1.38 4.52 32.01 -3 8) T107/G108 0.89 1.39 3.51 12.79 -17.59 37.39 -9 9) G108/G109 -0.51 -1.71 5.20 -26.69 67.26 12.05 1 10) G109/A110 -0.28 0.18 3.24 4.85 -6.72 36.82 2 11) A110/C111 0.81 -0.65 2.57 7.15 -0.18 32.83 -6 12) C111/C112 0.11 -0.38 3.83 -7.64 6.72 35.54 -1 13) C112/T113 -0.65 -0.01 3.21 4.96 0.44 31.44 -3 14) T113/T114 -0.14 -0.09 2.90 2.64 -8.90 38.60 -4 15) T114/C115 1.00 0.43 3.39 1.79 -0.64 42.32 -2 16) C115/C116 -0.88 -0.12 2.99 5.15 3.25 25.25 -1 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G216/G215 0.69 0.05 3.50 5.13 1.23 33.20 1 3) G215/A214 -0.91 0.02 3.46 -0.99 -2.49 32.67 3 4) A214/G213 0.11 0.21 3.15 -0.92 -0.78 34.02 2 5) G213/A212 0.24 -0.39 3.10 0.62 0.79 36.28 3 6) A212/G211 0.43 0.20 3.20 1.64 3.59 33.34 2 7) G211/A210 -0.54 -0.26 2.90 -10.34 6.75 35.26 3 8) A210/C209 1.46 -1.26 3.80 -6.36 7.93 26.01 9 9) C209/C208 -1.05 1.61 5.71 14.13 -47.15 27.33 -1 10) C208/T207 -0.62 0.01 2.58 -12.27 -10.01 36.51 -2 11) T207/G206 1.19 0.77 3.07 -2.02 -10.47 26.59 6 12) G206/G205 0.34 0.16 3.39 11.40 -3.12 41.27 1 13) G205/A204 -0.58 -0.00 3.24 0.85 -2.84 31.05 3 14) A204/A203 -0.27 0.10 3.37 4.68 3.32 38.57 4 15) A203/G202 1.20 -0.23 3.27 5.33 11.11 36.23 2 16) G202/G201 -0.77 -0.06 3.16 -4.31 0.59 31.20 1 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 0.82 0.04 3.74 -2.53 0.92 35.31 -1 3) C102/U103 -0.72 -0.08 3.03 7.96 -1.10 31.08 -3 4) U103/C104 -0.14 -0.12 3.46 -4.34 -0.29 32.10 -2 5) C104/T105 0.14 0.14 2.96 2.56 -1.27 35.18 -3 6) T105/C106 0.66 -0.11 3.28 -0.39 -2.87 35.65 -2 7) C106/T107 -0.50 0.21 3.09 -4.48 -1.12 33.64 -3 8) T107/G108 1.17 1.32 3.66 3.22 -12.76 31.70 -9 9) G108/G109 -0.78 -1.66 5.45 -6.28 57.21 19.69 1 10) G109/A110 -0.45 0.08 2.91 -3.71 1.64 36.66 2 11) A110/C111 1.00 -0.71 2.82 2.57 5.14 29.71 -6 12) C111/C112 0.23 -0.27 3.61 1.88 4.92 38.40 -1 13) C112/T113 -0.62 -0.00 3.23 2.90 1.64 31.25 -3 14) T113/T114 -0.20 -0.10 3.13 3.66 -6.11 38.58 -4 15) T114/C115 1.10 0.33 3.33 3.56 -5.87 39.27 -2 16) C115/C116 -0.83 -0.03 3.07 0.42 1.33 28.22 -1 Average: 0.06 -0.06 3.39 0.47 2.76 33.10 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 1.06 -1.52 3.83 -8.84 1.43 37.71 -1 3) C102/U103 -0.70 -1.11 2.55 16.52 -4.23 29.74 -3 4) U103/C104 -0.33 -0.72 3.91 -6.53 2.51 30.22 -2 5) C104/T105 0.11 -0.96 3.07 6.80 3.84 32.99 -3 6) T105/C106 1.16 -0.53 3.45 2.17 6.45 36.93 -2 7) C106/T107 -0.21 0.21 3.49 5.16 13.78 29.26 -3 8) T107/G108 1.03 1.87 2.83 20.52 -0.31 30.68 -9 9) G108/G109 -0.18 -0.12 7.73 -35.84 65.72 4.04 1 10) G109/A110 -0.89 -0.33 3.41 0.04 -1.37 35.84 2 11) A110/C111 0.84 -0.89 2.99 8.37 6.79 30.41 -6 12) C111/C112 0.55 -0.74 4.01 -4.98 11.74 35.35 -1 13) C112/T113 -0.42 -0.61 3.32 5.90 3.28 31.05 -3 14) T113/T114 0.34 -0.85 2.97 6.68 -3.95 38.06 -4 15) T114/C115 1.57 -0.36 3.16 7.90 3.55 41.78 -2 16) C115/C116 -0.61 -0.41 3.10 7.12 6.50 24.72 -1 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G216/G215 0.58 -0.96 3.53 4.58 0.35 33.30 1 3) G215/A214 -1.08 -0.97 3.41 -2.52 4.92 32.70 3 4) A214/G213 -0.31 -1.17 3.24 -4.54 3.89 33.55 2 5) G213/A212 -0.19 -0.31 3.23 -2.61 5.01 35.50 3 6) A212/G211 0.06 -0.41 3.37 0.27 3.96 32.43 2 7) G211/A210 -0.51 -0.02 3.11 -7.32 1.64 34.28 3 8) A210/C209 1.83 1.14 3.34 -0.26 -4.58 26.83 9 9) C209/C208 -0.64 -1.28 7.21 18.54 50.22 21.05 -1 10) C208/T207 -0.81 -0.67 2.96 -12.99 16.45 34.65 -2 11) T207/G206 0.83 -1.47 3.41 -4.65 11.31 26.05 6 12) G206/G205 -0.15 -0.89 3.53 4.61 5.60 42.34 1 13) G205/A204 -1.03 -0.27 3.20 -4.29 6.75 30.39 3 14) A204/A203 -0.72 -0.58 3.37 -2.02 2.11 38.64 4 15) A203/G202 0.99 0.08 3.34 1.97 -4.33 36.62 2 16) G202/G201 -0.75 -0.04 3.17 -4.98 4.22 30.89 1 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C101/C102 0.82 -1.22 3.69 -2.15 0.64 35.39 -1 3) C102/U103 -0.89 -1.04 2.97 7.18 0.73 31.24 -3 4) U103/C104 -0.34 -0.95 3.57 -5.54 3.18 31.94 -2 5) C104/T105 -0.04 -0.64 3.15 2.10 4.36 34.35 -3 6) T105/C106 0.61 -0.47 3.44 1.22 5.20 34.80 -2 7) C106/T107 -0.36 0.09 3.29 -1.08 7.70 31.88 -3 8) T107/G108 1.43 1.54 3.09 10.17 -2.59 28.54 -9 9) G108/G109 -0.34 -0.72 7.34 -7.07 60.34 13.31 1 10) G109/A110 -0.83 -0.49 3.17 -6.85 7.25 35.32 2 11) A110/C111 0.86 -1.16 3.20 1.84 9.03 27.96 -6 12) C111/C112 0.17 -0.82 3.78 -0.14 8.75 39.15 -1 13) C112/T113 -0.74 -0.45 3.27 0.75 4.82 30.90 -3 14) T113/T114 -0.16 -0.74 3.20 2.24 -1.08 38.76 -4 15) T114/C115 1.28 -0.14 3.27 5.00 -0.43 39.27 -2 16) C115/C116 -0.68 -0.22 3.14 1.07 5.33 27.79 -1 Average: 0.05 -0.50 3.57 0.58 7.55 32.04 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) C101/C102 0.41 -0.05 -1.08 -1.25 0.41 1.65 3.77 -1 3) C102/U103 -0.41 -0.14 1.82 -2.48 0.43 3.08 3.06 -3 4) U103/C104 -0.15 -0.10 -5.62 0.18 0.18 5.62 3.46 -2 5) C104/T105 -0.01 0.04 -2.05 1.37 0.04 2.46 2.96 -3 6) T105/C106 0.24 -0.13 -3.33 0.27 0.28 3.35 3.29 -2 7) C106/T107 -0.36 0.05 -6.13 3.24 0.37 6.93 3.10 -3 8) T107/G108 0.56 0.56 2.39 -2.49 0.79 3.45 3.74 -9 9) G108/G109 -0.30 -0.77 0.11 31.62 0.82 31.62 5.31 1 10) G109/A110 -0.18 0.10 -1.05 6.12 0.21 6.21 2.92 2 11) A110/C111 0.56 -0.32 4.14 6.16 0.64 7.42 2.89 -6 12) C111/C112 0.10 -0.18 2.44 2.52 0.20 3.51 3.62 -1 13) C112/T113 -0.36 -0.02 1.90 1.21 0.36 2.25 3.25 -3 14) T113/T114 -0.16 -0.00 2.39 -1.61 0.16 2.88 3.14 -4 15) T114/C115 0.55 0.16 3.44 -3.46 0.58 4.88 3.38 -2 16) C115/C116 -0.41 -0.07 0.19 -0.99 0.42 1.01 3.10 -1 Overall axis bend ... UU= 61.65 PP= 66.71 Duplex Offset L.Dir ... wrt end-to-end vector 1) C101 0.00 0.00 2) C102 2.18 -161.88 3) U103 3.31 170.66 4) C104 4.81 142.02 5) T105 6.07 111.49 6) C106 7.56 77.85 7) T107 8.73 44.96 8) G108 9.14 9.02 9) G109 9.90 1.12 10) A110 9.43 -34.31 11) C111 7.92 -67.58 12) C112 6.26 -102.15 13) T113 4.68 -129.09 14) T114 3.10 -164.30 15) C115 1.91 161.80 16) C116 0.00 0.00 Path length= 50.98 End-to-end= 45.81 Shortening= 10.13 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CA 101 23.65 -15.12 128.79 24.69 C1'-exo 106.4 105.6 105.2 2)CA 102 17.55 0.71 89.04 31.61 O1'-endo 105.9 106.1 104.6 3)U+A 103 26.98 -26.34 161.63 28.27 C2'-endo 105.8 104.1 104.0 4)CA 104 36.47 -28.78 143.52 36.63 C1'-exo 105.0 102.2 104.3 5)TA 105 37.22 -33.53 154.74 37.93 C2'-endo 105.1 101.5 103.4 6)CA 106 31.92 -21.42 131.95 32.86 C1'-exo 105.0 104.1 104.1 7)TA 107 14.30 -1.06 92.63 23.73 O1'-endo 105.9 106.9 104.7 8)GA 108 -7.56 18.26 35.76 22.68 C3'-endo 107.6 105.6 105.1 9)GA 109 40.64 -33.97 149.36 40.70 C2'-endo 104.9 100.8 103.0 10)AA 110 29.31 -32.96 174.73 33.79 C2'-endo 106.8 102.6 103.3 11)CA 111 39.51 -26.49 132.30 40.52 C1'-exo 104.2 102.1 103.9 12)CA 112 31.49 -20.92 130.96 32.64 C1'-exo 105.3 103.9 104.8 13)TA 113 45.94 -42.99 158.44 47.42 C2'-endo 104.0 98.0 102.2 14)TA 114 36.52 -34.18 158.67 37.65 C2'-endo 105.3 101.4 103.0 15)CA 115 37.47 -29.84 144.66 37.54 C2'-endo 105.1 101.9 104.0 16)CA 116 34.62 -26.73 141.98 34.72 C1'-exo 104.7 103.4 103.8 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CA 101 -132.65 -178.41 125.50 -173.50 -92.62 -53.24 170.04 2)CA 102 -156.51 50.32 109.65 -172.29 -94.99 -55.82 -173.89 3)U+A 103 -110.40 57.30 136.59 -161.19 -108.91 -51.45 162.90 4)CA 104 -121.03 45.58 126.94 -172.54 -100.28 -57.45 -171.77 5)TA 105 -96.45 36.19 137.71 -170.76 -108.12 -42.51 172.16 6)CA 106 -109.90 32.48 121.89 -151.40 -109.95 -64.17 166.77 7)TA 107 -115.19 36.74 108.20 -159.49 -109.95 -59.39 164.79 8)GA 108 -108.11 49.72 104.93 -132.22 -80.83 -54.57 175.27 9)GA 109 -109.74 45.28 136.60 -156.05 -148.03 -48.51 162.17 10)AA 110 -108.88 41.24 144.62 -171.34 -93.60 -56.92 172.01 11)CA 111 -104.19 37.90 126.66 -164.34 -133.78 -29.92 150.00 12)CA 112 -123.93 36.57 123.30 -169.91 -109.00 -69.51 175.02 13)TA 113 -109.87 63.14 158.65 -139.21 -151.13 -39.66 157.70 14)TA 114 -101.05 26.10 138.24 177.36 -94.84 -66.45 -171.09 15)CA 115 -95.35 42.93 135.82 -169.49 -128.83 -50.82 161.94 16)CA 116 -110.11 48.25 130.44 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GB 216 -5.27 -0.11 269.45 9.44 O1'-exo 107.0 107.8 104.6 2)GB 215 27.70 -28.92 170.31 30.38 C2'-endo 107.9 102.9 103.0 3)AB 214 31.70 -29.04 156.72 32.40 C2'-endo 106.1 103.0 103.8 4)GB 213 37.37 -34.20 156.85 38.23 C2'-endo 106.1 100.9 103.5 5)AB 212 38.52 -31.23 146.00 38.63 C2'-endo 104.9 101.5 103.9 6)GB 211 40.70 -34.24 149.64 40.83 C2'-endo 104.8 100.7 103.1 7)AB 210 29.94 -32.98 173.34 34.02 C2'-endo 106.7 102.3 102.9 8)CB 209 34.63 -32.42 158.69 35.65 C2'-endo 105.9 102.2 103.5 9)CB 208 -2.86 15.09 48.01 22.52 C4'-exo 107.1 106.3 105.5 10)TB 207 -1.59 14.26 51.43 22.92 C4'-exo 106.9 107.1 104.4 11)GB 206 -12.94 12.83 342.11 13.67 C2'-exo 107.9 105.5 106.5 12)GB 205 47.34 -37.20 145.43 47.09 C2'-endo 105.0 97.9 103.1 13)AB 204 33.49 -31.90 159.67 34.78 C2'-endo 105.7 102.1 103.5 14)AB 203 34.45 -34.08 163.26 36.35 C2'-endo 105.6 102.1 103.2 15)GB 202 44.94 -40.02 155.36 45.59 C2'-endo 105.6 98.1 102.8 16)GB 201 21.82 -33.95 198.47 36.53 C3'-exo 106.8 102.8 102.2 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GB 216 -172.14 158.86 127.90 ...... ...... ...... ...... 2)GB 215 -113.34 -68.84 147.19 179.89 -102.82 172.15 150.73 3)AB 214 -102.72 43.57 135.20 -164.68 -108.29 33.39 -162.13 4)GB 213 -106.00 44.67 143.50 177.06 -104.77 -57.36 -168.89 5)AB 212 -110.84 32.54 134.93 -168.03 -128.99 -45.88 162.89 6)GB 211 -95.81 45.34 136.40 -157.27 -149.28 -32.27 145.93 7)AB 210 -104.35 50.68 144.01 -160.78 -102.92 -61.53 167.54 8)CB 209 -97.58 50.40 142.64 -130.57 -176.61 -58.71 143.04 9)CB 208 -137.32 41.82 104.89 -151.80 -66.13 -86.58 -133.27 10)TB 207 -142.78 33.35 105.63 -162.27 -81.64 -62.93 -177.67 11)GB 206 -156.94 -139.66 115.60 -152.08 -80.30 -56.66 -170.78 12)GB 205 -93.95 32.15 139.99 -139.44 -167.78 63.44 -159.31 13)AB 204 -100.60 43.00 137.65 -164.03 -103.97 -45.43 160.72 14)AB 203 -113.36 48.05 144.58 -174.83 -103.63 -56.06 -178.27 15)GB 202 -90.45 48.93 150.85 -114.40 169.44 -71.96 147.65 16)GB 201 -101.75 165.19 161.54 179.95 -87.48 -73.14 178.27